Protein–RNA interactions for Protein: Q00780

Col8a1, Collagen alpha-1(VIII) chain, mousemouse

Predictions only

Length 744 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Col8a1Q00780 Chrna5-204ENSMUST00000217408 2446 ntTSL 1 (best) BASIC19.11■□□□□ 0.65
Col8a1Q00780 Fgf8-206ENSMUST00000111928 1056 ntTSL 1 (best) BASIC19.11■□□□□ 0.65
Col8a1Q00780 Ssbp1-203ENSMUST00000117411 933 ntAPPRIS P1 TSL 1 (best) BASIC19.11■□□□□ 0.65
Col8a1Q00780 Sec61a2-201ENSMUST00000026926 756 ntTSL 5 BASIC19.11■□□□□ 0.65
Col8a1Q00780 Hrk-201ENSMUST00000054836 5382 ntAPPRIS P1 TSL 1 (best) BASIC19.11■□□□□ 0.65
Col8a1Q00780 Ybx3-202ENSMUST00000087865 1684 ntAPPRIS ALT2 TSL 1 (best) BASIC19.11■□□□□ 0.65
Col8a1Q00780 Dusp2-201ENSMUST00000028846 1617 ntAPPRIS P1 TSL 1 (best) BASIC19.11■□□□□ 0.65
Col8a1Q00780 Marcksl1-201ENSMUST00000062356 1605 ntAPPRIS P1 TSL 1 (best) BASIC19.11■□□□□ 0.65
Col8a1Q00780 Arpc2-203ENSMUST00000113820 1439 ntAPPRIS P1 TSL 1 (best) BASIC19.1■□□□□ 0.65
Col8a1Q00780 Gm14121-201ENSMUST00000121441 1380 ntBASIC19.1■□□□□ 0.65
Col8a1Q00780 Fcho2-201ENSMUST00000040340 5122 ntAPPRIS P1 TSL 1 (best) BASIC19.1■□□□□ 0.65
Col8a1Q00780 Ssx2ip-202ENSMUST00000106149 2416 ntAPPRIS ALT2 TSL 1 (best) BASIC19.1■□□□□ 0.65
Col8a1Q00780 Bloc1s4-201ENSMUST00000071949 1273 ntAPPRIS P1 BASIC19.1■□□□□ 0.65
Col8a1Q00780 Nt5m-201ENSMUST00000102695 1306 ntAPPRIS P1 TSL 1 (best) BASIC19.09■□□□□ 0.65
Col8a1Q00780 Txnrd2-201ENSMUST00000115604 1235 ntTSL 1 (best) BASIC19.09■□□□□ 0.65
Col8a1Q00780 Ltb-203ENSMUST00000173600 905 ntAPPRIS ALT2 TSL 5 BASIC19.09■□□□□ 0.65
Col8a1Q00780 Gm45095-201ENSMUST00000206736 254 ntTSL 5 BASIC19.09■□□□□ 0.65
Col8a1Q00780 Bex1-201ENSMUST00000058125 866 ntAPPRIS P1 TSL 1 (best) BASIC19.09■□□□□ 0.65
Col8a1Q00780 Metrnl-201ENSMUST00000036742 1401 ntAPPRIS P2 TSL 1 (best) BASIC19.08■□□□□ 0.65
Col8a1Q00780 Hebp2-202ENSMUST00000213153 968 ntTSL 1 (best) BASIC19.08■□□□□ 0.64
Col8a1Q00780 Svbp-201ENSMUST00000030395 733 ntAPPRIS P1 TSL 1 (best) BASIC19.08■□□□□ 0.64
Col8a1Q00780 Hoxd11-202ENSMUST00000142312 1111 ntAPPRIS P1 TSL 1 (best) BASIC19.07■□□□□ 0.64
Col8a1Q00780 Tmem196-202ENSMUST00000183694 845 ntTSL 3 BASIC19.07■□□□□ 0.64
Col8a1Q00780 Rnf220-212ENSMUST00000221654 1949 ntTSL 1 (best) BASIC19.07■□□□□ 0.64
Col8a1Q00780 Gm10837-201ENSMUST00000100294 1536 ntAPPRIS P1 BASIC19.06■□□□□ 0.64
Col8a1Q00780 Ccdc84-212ENSMUST00000217351 888 ntTSL 3 BASIC19.06■□□□□ 0.64
Col8a1Q00780 Pfdn2-202ENSMUST00000135941 1735 ntAPPRIS P1 TSL 1 (best) BASIC19.05■□□□□ 0.64
Col8a1Q00780 Ppia-202ENSMUST00000132846 1170 ntAPPRIS P1 TSL 1 (best) BASIC19.05■□□□□ 0.64
Col8a1Q00780 Acad9-205ENSMUST00000196648 552 ntTSL 3 BASIC19.05■□□□□ 0.64
Col8a1Q00780 Sds-204ENSMUST00000201684 1288 ntAPPRIS P1 TSL 5 BASIC19.05■□□□□ 0.64
Col8a1Q00780 Pth2-201ENSMUST00000042754 503 ntAPPRIS P1 TSL 1 (best) BASIC19.05■□□□□ 0.64
Col8a1Q00780 Lor-201ENSMUST00000058150 1779 ntAPPRIS P1 TSL 1 (best) BASIC19.05■□□□□ 0.64
Col8a1Q00780 Ildr2-205ENSMUST00000193860 2320 ntTSL 1 (best) BASIC19.05■□□□□ 0.64
Col8a1Q00780 Gm28417-201ENSMUST00000185218 785 ntTSL 3 BASIC19.04■□□□□ 0.64
Col8a1Q00780 AC117769.4-201ENSMUST00000225679 685 ntBASIC19.04■□□□□ 0.64
Col8a1Q00780 Pan3-209ENSMUST00000176600 5541 ntAPPRIS ALT2 TSL 5 BASIC19.04■□□□□ 0.64
Col8a1Q00780 Ebf4-203ENSMUST00000110288 2982 ntAPPRIS ALT2 TSL 5 BASIC19.04■□□□□ 0.64
Col8a1Q00780 Fgf16-201ENSMUST00000033581 1645 ntAPPRIS P1 TSL 1 (best) BASIC19.03■□□□□ 0.64
Col8a1Q00780 Mpp6-202ENSMUST00000036236 2161 ntAPPRIS P1 TSL 1 (best) BASIC19.03■□□□□ 0.64
Col8a1Q00780 Naxd-202ENSMUST00000177955 1307 ntAPPRIS P1 TSL 1 (best) BASIC19.03■□□□□ 0.64
Col8a1Q00780 Msrb1-201ENSMUST00000101800 1211 ntAPPRIS P1 TSL 1 (best) BASIC19.03■□□□□ 0.64
Col8a1Q00780 Srsf6-202ENSMUST00000126163 515 ntTSL 5 BASIC19.03■□□□□ 0.64
Col8a1Q00780 Tor2a-208ENSMUST00000177382 396 ntTSL 5 BASIC19.03■□□□□ 0.64
Col8a1Q00780 Gm26536-201ENSMUST00000181072 1196 ntTSL 1 (best) BASIC19.03■□□□□ 0.64
Col8a1Q00780 Gm10232-201ENSMUST00000089221 720 ntBASIC19.03■□□□□ 0.64
Col8a1Q00780 Fam96b-201ENSMUST00000093234 639 ntTSL 5 BASIC19.03■□□□□ 0.64
Col8a1Q00780 Pdss1-207ENSMUST00000152170 1538 ntTSL 1 (best) BASIC19.03■□□□□ 0.64
Col8a1Q00780 Prr7-201ENSMUST00000046533 1359 ntAPPRIS P1 TSL 1 (best) BASIC19.03■□□□□ 0.64
Col8a1Q00780 Ybx3-201ENSMUST00000032309 1853 ntAPPRIS P4 TSL 1 (best) BASIC19.03■□□□□ 0.64
Col8a1Q00780 Exosc8-201ENSMUST00000029316 1300 ntAPPRIS P1 TSL 1 (best) BASIC19.02■□□□□ 0.64
Col8a1Q00780 6330403L08Rik-202ENSMUST00000187923 5522 ntBASIC19.02■□□□□ 0.64
Col8a1Q00780 4930524J08Rik-201ENSMUST00000046721 603 ntAPPRIS P1 BASIC19.02■□□□□ 0.64
Col8a1Q00780 Vcpkmt-201ENSMUST00000058639 1027 ntAPPRIS P1 TSL 1 (best) BASIC19.02■□□□□ 0.64
Col8a1Q00780 Rras2-201ENSMUST00000069449 2275 ntAPPRIS P1 TSL 1 (best) BASIC19.02■□□□□ 0.63
Col8a1Q00780 Gsc2-201ENSMUST00000012279 1172 ntAPPRIS P1 TSL 1 (best) BASIC19.01■□□□□ 0.63
Col8a1Q00780 Gm11837-201ENSMUST00000136992 876 ntTSL 2 BASIC19.01■□□□□ 0.63
Col8a1Q00780 Gm2415-201ENSMUST00000128982 1474 ntTSL 1 (best) BASIC19.01■□□□□ 0.63
Col8a1Q00780 Pex10-201ENSMUST00000103180 1688 ntAPPRIS P1 TSL 1 (best) BASIC19.01■□□□□ 0.63
Col8a1Q00780 Rps2-ps6-201ENSMUST00000095471 855 ntBASIC19■□□□□ 0.63
Col8a1Q00780 C1qtnf5-204ENSMUST00000114821 1365 ntAPPRIS P1 TSL 2 BASIC19■□□□□ 0.63
Col8a1Q00780 Gm37847-201ENSMUST00000192163 1497 ntBASIC19■□□□□ 0.63
Col8a1Q00780 Gm31748-201ENSMUST00000194938 1497 ntBASIC19■□□□□ 0.63
Col8a1Q00780 Prr5-201ENSMUST00000065499 1830 ntAPPRIS P3 TSL 1 (best) BASIC19■□□□□ 0.63
Col8a1Q00780 Selenof-201ENSMUST00000082437 1514 ntAPPRIS P1 TSL 1 (best) BASIC19■□□□□ 0.63
Col8a1Q00780 Mpnd-209ENSMUST00000162883 1400 ntTSL 5 BASIC19■□□□□ 0.63
Col8a1Q00780 Rtl10-201ENSMUST00000146673 865 ntAPPRIS P1 TSL 1 (best) BASIC18.99■□□□□ 0.63
Col8a1Q00780 Sin3b-203ENSMUST00000212095 1257 ntTSL 1 (best) BASIC18.99■□□□□ 0.63
Col8a1Q00780 4833418N17Rik-201ENSMUST00000064826 615 ntBASIC18.99■□□□□ 0.63
Col8a1Q00780 Ubl7-208ENSMUST00000216841 1426 ntAPPRIS P1 TSL 5 BASIC18.99■□□□□ 0.63
Col8a1Q00780 Emc10-201ENSMUST00000118515 1662 ntAPPRIS ALT2 TSL 1 (best) BASIC18.98■□□□□ 0.63
Col8a1Q00780 B430218F22Rik-201ENSMUST00000181168 1495 ntAPPRIS P1 BASIC18.98■□□□□ 0.63
Col8a1Q00780 Gm43034-201ENSMUST00000198678 1364 ntBASIC18.98■□□□□ 0.63
Col8a1Q00780 Dbp-203ENSMUST00000211357 1252 ntTSL 5 BASIC18.98■□□□□ 0.63
Col8a1Q00780 Pmpca-202ENSMUST00000114093 1638 ntTSL 1 (best) BASIC18.98■□□□□ 0.63
Col8a1Q00780 Runx2-211ENSMUST00000162629 1607 ntAPPRIS ALT2 TSL 5 BASIC18.98■□□□□ 0.63
Col8a1Q00780 Amer2-203ENSMUST00000225247 2662 ntBASIC18.97■□□□□ 0.63
Col8a1Q00780 Gm2415-203ENSMUST00000149952 435 ntTSL 5 BASIC18.97■□□□□ 0.63
Col8a1Q00780 Anp32e-210ENSMUST00000171368 878 ntTSL 3 BASIC18.97■□□□□ 0.63
Col8a1Q00780 Bub3-205ENSMUST00000208571 747 ntTSL 5 BASIC18.97■□□□□ 0.63
Col8a1Q00780 Arhgap22-201ENSMUST00000111955 2148 ntTSL 1 (best) BASIC18.97■□□□□ 0.63
Col8a1Q00780 Sox17-202ENSMUST00000116652 1512 ntAPPRIS P1 TSL 1 (best) BASIC18.96■□□□□ 0.63
Col8a1Q00780 Wipi1-203ENSMUST00000106689 1220 ntTSL 1 (best) BASIC18.96■□□□□ 0.63
Col8a1Q00780 Anxa5-201ENSMUST00000029266 1731 ntAPPRIS P1 TSL 1 (best) BASIC18.96■□□□□ 0.63
Col8a1Q00780 Rmnd5a-201ENSMUST00000002292 6165 ntAPPRIS P1 TSL 1 (best) BASIC18.95■□□□□ 0.62
Col8a1Q00780 Hook1-201ENSMUST00000030306 5517 ntAPPRIS P1 TSL 1 (best) BASIC18.95■□□□□ 0.62
Col8a1Q00780 Btg3-201ENSMUST00000023570 1414 ntAPPRIS P1 TSL 1 (best) BASIC18.95■□□□□ 0.62
Col8a1Q00780 Alyref2-201ENSMUST00000081527 1273 ntAPPRIS P1 BASIC18.95■□□□□ 0.62
Col8a1Q00780 Gm13241-201ENSMUST00000094493 780 ntBASIC18.95■□□□□ 0.62
Col8a1Q00780 Lemd2-201ENSMUST00000055117 2595 ntAPPRIS P1 TSL 1 (best) BASIC18.95■□□□□ 0.62
Col8a1Q00780 Maf-201ENSMUST00000069009 3223 ntAPPRIS ALT2 TSL 1 (best) BASIC18.95■□□□□ 0.62
Col8a1Q00780 Clk2-203ENSMUST00000121931 2112 ntAPPRIS ALT1 TSL 5 BASIC18.95■□□□□ 0.62
Col8a1Q00780 Hmg20b-203ENSMUST00000105324 1540 ntAPPRIS P1 TSL 1 (best) BASIC18.95■□□□□ 0.62
Col8a1Q00780 Grin2d-201ENSMUST00000002848 5431 ntAPPRIS P1 TSL 1 (best) BASIC18.94■□□□□ 0.62
Col8a1Q00780 Kcnc3-202ENSMUST00000107907 5281 ntAPPRIS P2 TSL 5 BASIC18.94■□□□□ 0.62
Col8a1Q00780 Scn1b-201ENSMUST00000098548 1573 ntAPPRIS P1 TSL 1 (best) BASIC18.93■□□□□ 0.62
Col8a1Q00780 A430027H14Rik-201ENSMUST00000191809 1467 ntBASIC18.93■□□□□ 0.62
Col8a1Q00780 Knstrn-202ENSMUST00000110842 925 ntAPPRIS ALT2 TSL 3 BASIC18.93■□□□□ 0.62
Col8a1Q00780 Atp8a1-203ENSMUST00000113651 808 ntTSL 5 BASIC18.93■□□□□ 0.62
Col8a1Q00780 Zfp36l1-204ENSMUST00000219642 545 ntTSL 3 BASIC18.93■□□□□ 0.62
Col8a1Q00780 Mapk1-203ENSMUST00000115731 1747 ntAPPRIS P1 TSL 1 (best) BASIC18.93■□□□□ 0.62
Retrieved 100 of 76,532 protein–RNA pairs in 14.9 ms