Protein–RNA interactions for Protein: O88609

Lmx1b, LIM homeobox transcription factor 1-beta, mousemouse

Predictions only

Length 395 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Lmx1bO88609 Ran-202ENSMUST00000111343 2423 ntAPPRIS P1 TSL 1 (best) BASIC20.19■□□□□ 0.82
Lmx1bO88609 Gm11613-201ENSMUST00000134427 1971 ntTSL 1 (best) BASIC20.19■□□□□ 0.82
Lmx1bO88609 Gm20208-202ENSMUST00000219905 1528 ntTSL 1 (best) BASIC20.19■□□□□ 0.82
Lmx1bO88609 Gm10420-201ENSMUST00000121713 882 ntBASIC20.19■□□□□ 0.82
Lmx1bO88609 Hpf1-204ENSMUST00000146863 531 ntTSL 2 BASIC20.19■□□□□ 0.82
Lmx1bO88609 Gm44428-201ENSMUST00000204474 874 ntBASIC20.19■□□□□ 0.82
Lmx1bO88609 Pdpk1-203ENSMUST00000115407 1730 ntTSL 5 BASIC20.19■□□□□ 0.82
Lmx1bO88609 Npas1-201ENSMUST00000002053 2091 ntAPPRIS P1 TSL 5 BASIC20.18■□□□□ 0.82
Lmx1bO88609 Ctage5-218ENSMUST00000177162 2728 ntTSL 5 BASIC20.18■□□□□ 0.82
Lmx1bO88609 Usf1-210ENSMUST00000167546 1822 ntAPPRIS P1 TSL 5 BASIC20.18■□□□□ 0.82
Lmx1bO88609 Hist2h3c1-201ENSMUST00000176059 1820 ntAPPRIS P1 BASIC20.18■□□□□ 0.82
Lmx1bO88609 Hist2h3c1-202ENSMUST00000177796 1825 ntBASIC20.18■□□□□ 0.82
Lmx1bO88609 Foxa2-202ENSMUST00000109964 2070 ntAPPRIS ALT2 TSL 1 (best) BASIC20.17■□□□□ 0.82
Lmx1bO88609 2310061I04Rik-202ENSMUST00000146451 2081 ntTSL 1 (best) BASIC20.17■□□□□ 0.82
Lmx1bO88609 Tmem70-203ENSMUST00000177501 1636 ntAPPRIS P3 TSL 1 (best) BASIC20.17■□□□□ 0.82
Lmx1bO88609 Kcnk2-205ENSMUST00000192723 1642 ntAPPRIS ALT1 TSL 1 (best) BASIC20.17■□□□□ 0.82
Lmx1bO88609 Shox2-204ENSMUST00000162439 1081 ntTSL 1 (best) BASIC20.17■□□□□ 0.82
Lmx1bO88609 Spsb3-205ENSMUST00000120943 1949 ntAPPRIS ALT2 TSL 1 (best) BASIC20.17■□□□□ 0.82
Lmx1bO88609 E130309D02Rik-201ENSMUST00000046418 2208 ntAPPRIS P1 TSL 1 (best) BASIC20.17■□□□□ 0.82
Lmx1bO88609 Wnt2-201ENSMUST00000010941 2255 ntAPPRIS P1 TSL 1 (best) BASIC20.16■□□□□ 0.82
Lmx1bO88609 Zdhhc2-205ENSMUST00000167766 1759 ntAPPRIS P1 TSL 1 (best) BASIC20.16■□□□□ 0.82
Lmx1bO88609 Nudt3-203ENSMUST00000114886 996 ntTSL 2 BASIC20.16■□□□□ 0.82
Lmx1bO88609 Ppp1r35-201ENSMUST00000031739 956 ntAPPRIS P1 TSL 1 (best) BASIC20.16■□□□□ 0.82
Lmx1bO88609 Pgls-201ENSMUST00000034264 893 ntAPPRIS P1 TSL 1 (best) BASIC20.16■□□□□ 0.82
Lmx1bO88609 Sh3d21-202ENSMUST00000097891 2384 ntAPPRIS P1 TSL 1 (best) BASIC20.16■□□□□ 0.82
Lmx1bO88609 Aldoa-214ENSMUST00000207534 741 ntAPPRIS P1 TSL 5 BASIC20.15■□□□□ 0.82
Lmx1bO88609 Jmjd6-201ENSMUST00000047616 1668 ntAPPRIS P1 TSL 1 (best) BASIC20.15■□□□□ 0.82
Lmx1bO88609 Fam220a-204ENSMUST00000119488 2202 ntTSL 1 (best) BASIC20.15■□□□□ 0.82
Lmx1bO88609 Fam220a-209ENSMUST00000200267 2202 ntAPPRIS P1 TSL 1 (best) BASIC20.15■□□□□ 0.82
Lmx1bO88609 Efhd2-201ENSMUST00000036854 2381 ntAPPRIS P1 TSL 1 (best) BASIC20.14■□□□□ 0.81
Lmx1bO88609 Lpcat4-201ENSMUST00000028554 2275 ntAPPRIS P1 TSL 1 (best) BASIC20.14■□□□□ 0.81
Lmx1bO88609 Scn1b-201ENSMUST00000098548 1573 ntAPPRIS P1 TSL 1 (best) BASIC20.13■□□□□ 0.81
Lmx1bO88609 Lsm4-205ENSMUST00000210987 636 ntTSL 5 BASIC20.13■□□□□ 0.81
Lmx1bO88609 Fam220a-205ENSMUST00000169329 2331 ntAPPRIS P1 TSL 1 (best) BASIC20.13■□□□□ 0.81
Lmx1bO88609 Asf1a-201ENSMUST00000020004 2201 ntAPPRIS P1 TSL 1 (best) BASIC20.12■□□□□ 0.81
Lmx1bO88609 D17Wsu92e-201ENSMUST00000075076 1470 ntTSL 1 (best) BASIC20.12■□□□□ 0.81
Lmx1bO88609 Htatsf1-202ENSMUST00000114751 1128 ntTSL 1 (best) BASIC20.12■□□□□ 0.81
Lmx1bO88609 Galr3-201ENSMUST00000058004 1245 ntAPPRIS P1 TSL 1 (best) BASIC20.12■□□□□ 0.81
Lmx1bO88609 Mxra7-201ENSMUST00000021170 2063 ntAPPRIS P3 TSL 1 (best) BASIC20.12■□□□□ 0.81
Lmx1bO88609 Ccsap-202ENSMUST00000122421 2673 ntAPPRIS P1 TSL 1 (best) BASIC20.11■□□□□ 0.81
Lmx1bO88609 H1fx-201ENSMUST00000056403 1217 ntAPPRIS P1 BASIC20.11■□□□□ 0.81
Lmx1bO88609 Ipmk-203ENSMUST00000121446 1492 ntAPPRIS ALT2 TSL 5 BASIC20.11■□□□□ 0.81
Lmx1bO88609 Kcnj6-201ENSMUST00000095873 1773 ntTSL 1 (best) BASIC20.11■□□□□ 0.81
Lmx1bO88609 Epb41l4b-203ENSMUST00000095076 6746 ntAPPRIS ALT2 TSL 5 BASIC20.1■□□□□ 0.81
Lmx1bO88609 Fam126a-206ENSMUST00000197617 2288 ntTSL 5 BASIC20.1■□□□□ 0.81
Lmx1bO88609 2610307P16Rik-205ENSMUST00000148885 1870 ntTSL 1 (best) BASIC20.1■□□□□ 0.81
Lmx1bO88609 St6galnac6-203ENSMUST00000095044 2394 ntAPPRIS P3 TSL 1 (best) BASIC20.09■□□□□ 0.81
Lmx1bO88609 Nudt6-204ENSMUST00000108118 935 ntTSL 5 BASIC20.09■□□□□ 0.81
Lmx1bO88609 Cyp2r1-202ENSMUST00000119712 917 ntTSL 5 BASIC20.09■□□□□ 0.81
Lmx1bO88609 Nudt6-201ENSMUST00000052645 1155 ntAPPRIS ALT2 TSL 1 (best) BASIC20.09■□□□□ 0.81
Lmx1bO88609 Nudt6-202ENSMUST00000099130 1070 ntAPPRIS P3 TSL 1 (best) BASIC20.09■□□□□ 0.81
Lmx1bO88609 Kif1c-205ENSMUST00000152618 1943 ntTSL 1 (best) BASIC20.08■□□□□ 0.81
Lmx1bO88609 Hnrnpul1-202ENSMUST00000108401 1240 ntTSL 1 (best) BASIC20.08■□□□□ 0.81
Lmx1bO88609 Prr5-201ENSMUST00000065499 1830 ntAPPRIS P3 TSL 1 (best) BASIC20.08■□□□□ 0.8
Lmx1bO88609 Il17rd-202ENSMUST00000223942 2186 ntBASIC20.08■□□□□ 0.8
Lmx1bO88609 Dusp5-201ENSMUST00000038287 2473 ntAPPRIS P1 TSL 5 BASIC20.08■□□□□ 0.8
Lmx1bO88609 Hoxc8-201ENSMUST00000001703 1868 ntAPPRIS P1 TSL 1 (best) BASIC20.07■□□□□ 0.8
Lmx1bO88609 Nrsn1-201ENSMUST00000057866 2222 ntAPPRIS P1 TSL 1 (best) BASIC20.07■□□□□ 0.8
Lmx1bO88609 Lin7b-201ENSMUST00000003971 735 ntAPPRIS P1 TSL 1 (best) BASIC20.07■□□□□ 0.8
Lmx1bO88609 Dleu7-201ENSMUST00000063169 1314 ntAPPRIS P1 TSL 1 (best) BASIC20.06■□□□□ 0.8
Lmx1bO88609 Tmem11-201ENSMUST00000062677 1457 ntAPPRIS P1 TSL 1 (best) BASIC20.06■□□□□ 0.8
Lmx1bO88609 Tm2d2-201ENSMUST00000033961 1281 ntAPPRIS P1 TSL 1 (best) BASIC20.06■□□□□ 0.8
Lmx1bO88609 Prph-202ENSMUST00000047104 1865 ntAPPRIS P3 TSL 1 (best) BASIC20.06■□□□□ 0.8
Lmx1bO88609 Zc3h6-201ENSMUST00000110319 1484 ntTSL 1 (best) BASIC20.05■□□□□ 0.8
Lmx1bO88609 Usp2-206ENSMUST00000176416 1486 ntAPPRIS ALT2 TSL 1 (best) BASIC20.05■□□□□ 0.8
Lmx1bO88609 Elf2-203ENSMUST00000108051 2514 ntTSL 1 (best) BASIC20.05■□□□□ 0.8
Lmx1bO88609 Cited1-202ENSMUST00000101336 1090 ntAPPRIS P1 TSL 1 (best) BASIC20.05■□□□□ 0.8
Lmx1bO88609 Osbpl10-207ENSMUST00000183104 2477 ntAPPRIS P1 TSL 5 BASIC20.05■□□□□ 0.8
Lmx1bO88609 Ttc9-201ENSMUST00000036116 2042 ntAPPRIS P1 TSL 1 (best) BASIC20.05■□□□□ 0.8
Lmx1bO88609 Mapk1-201ENSMUST00000023462 2390 ntAPPRIS P1 TSL 1 (best) BASIC20.05■□□□□ 0.8
Lmx1bO88609 Rasgef1c-203ENSMUST00000093142 2216 ntAPPRIS P3 TSL 1 (best) BASIC20.04■□□□□ 0.8
Lmx1bO88609 Fam92a-208ENSMUST00000177837 1325 ntAPPRIS ALT2 TSL 5 BASIC20.04■□□□□ 0.8
Lmx1bO88609 Fam220a-201ENSMUST00000067145 2198 ntAPPRIS P1 TSL 1 (best) BASIC20.04■□□□□ 0.8
Lmx1bO88609 Ppcs-201ENSMUST00000030385 1443 ntAPPRIS P1 TSL 1 (best) BASIC20.04■□□□□ 0.8
Lmx1bO88609 Olfm2-203ENSMUST00000215999 1895 ntAPPRIS ALT2 TSL 3 BASIC20.03■□□□□ 0.8
Lmx1bO88609 Slc44a1-203ENSMUST00000107646 1974 ntTSL 5 BASIC20.03■□□□□ 0.8
Lmx1bO88609 Irx1-201ENSMUST00000077337 2373 ntAPPRIS P2 TSL 1 (best) BASIC20.03■□□□□ 0.8
Lmx1bO88609 Siah1a-201ENSMUST00000045296 1968 ntAPPRIS P1 TSL 1 (best) BASIC20.03■□□□□ 0.8
Lmx1bO88609 Fam50b-202ENSMUST00000221037 1345 ntAPPRIS P1 TSL 1 (best) BASIC20.02■□□□□ 0.8
Lmx1bO88609 Foxe3-201ENSMUST00000050940 867 ntAPPRIS P1 BASIC20.02■□□□□ 0.8
Lmx1bO88609 B230377A18Rik-202ENSMUST00000192921 1364 ntBASIC20.02■□□□□ 0.8
Lmx1bO88609 Ip6k1-208ENSMUST00000176854 2251 ntTSL 1 (best) BASIC20.02■□□□□ 0.8
Lmx1bO88609 Kansl1l-202ENSMUST00000113987 2342 ntTSL 1 (best) BASIC20.02■□□□□ 0.79
Lmx1bO88609 Tmem260-210ENSMUST00000227440 2222 ntAPPRIS ALT2 BASIC20.02■□□□□ 0.79
Lmx1bO88609 Shb-201ENSMUST00000061986 2244 ntAPPRIS P1 TSL 1 (best) BASIC20.02■□□□□ 0.79
Lmx1bO88609 Runx2-211ENSMUST00000162629 1607 ntAPPRIS ALT2 TSL 5 BASIC20.02■□□□□ 0.79
Lmx1bO88609 Kcnmb4os2-203ENSMUST00000127070 1048 ntTSL 2 BASIC20.01■□□□□ 0.79
Lmx1bO88609 Gfra4-206ENSMUST00000110240 1426 ntAPPRIS ALT2 TSL 1 (best) BASIC20.01■□□□□ 0.79
Lmx1bO88609 Gm10499-202ENSMUST00000174778 1698 ntTSL 1 (best) BASIC20■□□□□ 0.79
Lmx1bO88609 Tmem106c-201ENSMUST00000064200 1635 ntAPPRIS P1 TSL 1 (best) BASIC20■□□□□ 0.79
Lmx1bO88609 Bag1-203ENSMUST00000191273 1348 ntAPPRIS ALT2 TSL 1 (best) BASIC20■□□□□ 0.79
Lmx1bO88609 Kcnq5-206ENSMUST00000173404 2775 ntAPPRIS ALT2 TSL 5 BASIC20■□□□□ 0.79
Lmx1bO88609 Agpat5-201ENSMUST00000033847 2841 ntAPPRIS ALT2 TSL 1 (best) BASIC19.99■□□□□ 0.79
Lmx1bO88609 Hoxc13-201ENSMUST00000001700 2461 ntAPPRIS P1 TSL 1 (best) BASIC19.99■□□□□ 0.79
Lmx1bO88609 Dennd5a-202ENSMUST00000106722 4862 ntTSL 1 (best) BASIC19.99■□□□□ 0.79
Lmx1bO88609 Elf2-204ENSMUST00000108053 2611 ntTSL 1 (best) BASIC19.99■□□□□ 0.79
Lmx1bO88609 Neurl1b-202ENSMUST00000182897 1231 ntTSL 5 BASIC19.99■□□□□ 0.79
Lmx1bO88609 AC117769.4-201ENSMUST00000225679 685 ntBASIC19.99■□□□□ 0.79
Lmx1bO88609 Smurf1-201ENSMUST00000085684 5343 ntAPPRIS P4 TSL 1 (best) BASIC19.99■□□□□ 0.79
Lmx1bO88609 Brwd1-203ENSMUST00000113827 2382 ntTSL 1 (best) BASIC19.98■□□□□ 0.79
Retrieved 100 of 76,532 protein–RNA pairs in 23.8 ms