Protein–RNA interactions for Protein: A0A0B4J1K1

Trav4-3, T cell receptor alpha variable 4-3 (Fragment), mousemouse

Predictions only

Length 110 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Trav4-3A0A0B4J1K1 Map3k21-201ENSMUST00000034316 5693 ntAPPRIS P1 TSL 1 (best) BASIC15.28■□□□□ 0.04
Trav4-3A0A0B4J1K1 Col23a1-201ENSMUST00000102765 5658 ntAPPRIS P1 TSL 5 BASIC15.27■□□□□ 0.04
Trav4-3A0A0B4J1K1 Hlx-201ENSMUST00000048572 2278 ntAPPRIS P1 TSL 1 (best) BASIC15.27■□□□□ 0.04
Trav4-3A0A0B4J1K1 Pou3f3-201ENSMUST00000054883 7409 ntAPPRIS P1 BASIC15.27■□□□□ 0.04
Trav4-3A0A0B4J1K1 Macrod2-205ENSMUST00000110063 845 ntTSL 5 BASIC15.27■□□□□ 0.04
Trav4-3A0A0B4J1K1 Bpifb4-202ENSMUST00000109757 2420 ntAPPRIS P2 TSL 5 BASIC15.27■□□□□ 0.03
Trav4-3A0A0B4J1K1 D1Ertd622e-203ENSMUST00000149927 2703 ntAPPRIS P1 TSL 1 (best) BASIC15.26■□□□□ 0.03
Trav4-3A0A0B4J1K1 A230005M16Rik-201ENSMUST00000137661 1605 ntTSL 1 (best) BASIC15.26■□□□□ 0.03
Trav4-3A0A0B4J1K1 Best2-202ENSMUST00000209322 1944 ntAPPRIS P1 TSL 1 (best) BASIC15.26■□□□□ 0.03
Trav4-3A0A0B4J1K1 Acss2-203ENSMUST00000103142 2145 ntTSL 5 BASIC15.26■□□□□ 0.03
Trav4-3A0A0B4J1K1 Rab43-203ENSMUST00000078647 4605 ntAPPRIS P1 TSL 1 (best) BASIC15.26■□□□□ 0.03
Trav4-3A0A0B4J1K1 Mageb3-201ENSMUST00000104936 2341 ntAPPRIS P1 BASIC15.25■□□□□ 0.03
Trav4-3A0A0B4J1K1 Junos-204ENSMUST00000128094 830 ntTSL 1 (best) BASIC15.25■□□□□ 0.03
Trav4-3A0A0B4J1K1 Foxd1-201ENSMUST00000105098 5064 ntAPPRIS P1 BASIC15.25■□□□□ 0.03
Trav4-3A0A0B4J1K1 Zfp639-202ENSMUST00000191783 1988 ntAPPRIS P1 TSL 1 (best) BASIC15.25■□□□□ 0.03
Trav4-3A0A0B4J1K1 Tmem9b-201ENSMUST00000033333 1703 ntAPPRIS P2 TSL 1 (best) BASIC15.25■□□□□ 0.03
Trav4-3A0A0B4J1K1 Senp6-201ENSMUST00000037484 5111 ntAPPRIS P3 TSL 1 (best) BASIC15.25■□□□□ 0.03
Trav4-3A0A0B4J1K1 Coq10a-207ENSMUST00000220227 1434 ntAPPRIS ALT2 TSL 5 BASIC15.25■□□□□ 0.03
Trav4-3A0A0B4J1K1 Gm43006-201ENSMUST00000197702 1602 ntBASIC15.25■□□□□ 0.03
Trav4-3A0A0B4J1K1 Gm38160-201ENSMUST00000193090 2499 ntBASIC15.24■□□□□ 0.03
Trav4-3A0A0B4J1K1 Cys1-203ENSMUST00000156453 1732 ntAPPRIS P1 TSL 2 BASIC15.24■□□□□ 0.03
Trav4-3A0A0B4J1K1 Tmem158-201ENSMUST00000068140 1712 ntAPPRIS P1 BASIC15.24■□□□□ 0.03
Trav4-3A0A0B4J1K1 Slc22a17-210ENSMUST00000228495 2340 ntAPPRIS P1 BASIC15.24■□□□□ 0.03
Trav4-3A0A0B4J1K1 Jmjd6-201ENSMUST00000047616 1668 ntAPPRIS P1 TSL 1 (best) BASIC15.24■□□□□ 0.03
Trav4-3A0A0B4J1K1 Zxdc-201ENSMUST00000045740 1612 ntAPPRIS ALT2 TSL 1 (best) BASIC15.24■□□□□ 0.03
Trav4-3A0A0B4J1K1 Manf-202ENSMUST00000159283 2247 ntAPPRIS P1 TSL 1 (best) BASIC15.24■□□□□ 0.03
Trav4-3A0A0B4J1K1 Kcnk1-201ENSMUST00000046765 2235 ntAPPRIS P1 TSL 1 (best) BASIC15.24■□□□□ 0.03
Trav4-3A0A0B4J1K1 Kctd2-201ENSMUST00000103035 1764 ntAPPRIS P1 TSL 1 (best) BASIC15.24■□□□□ 0.03
Trav4-3A0A0B4J1K1 5031439G07Rik-203ENSMUST00000165743 5032 ntTSL 1 (best) BASIC15.23■□□□□ 0.03
Trav4-3A0A0B4J1K1 Rmdn2-208ENSMUST00000225357 2118 ntAPPRIS P1 BASIC15.23■□□□□ 0.03
Trav4-3A0A0B4J1K1 Kctd9-204ENSMUST00000150768 1302 ntAPPRIS P1 TSL 5 BASIC15.23■□□□□ 0.03
Trav4-3A0A0B4J1K1 Tmem164-206ENSMUST00000112896 5224 ntAPPRIS P1 TSL 1 (best) BASIC15.23■□□□□ 0.03
Trav4-3A0A0B4J1K1 Psme4-201ENSMUST00000041231 6491 ntAPPRIS P1 TSL 1 (best) BASIC15.23■□□□□ 0.03
Trav4-3A0A0B4J1K1 Il17d-201ENSMUST00000089494 1274 ntAPPRIS P1 TSL 1 (best) BASIC15.23■□□□□ 0.03
Trav4-3A0A0B4J1K1 Rab3il1-202ENSMUST00000117641 2004 ntAPPRIS ALT2 TSL 1 (best) BASIC15.22■□□□□ 0.03
Trav4-3A0A0B4J1K1 Cbln1-202ENSMUST00000169693 1699 ntAPPRIS P1 TSL 5 BASIC15.22■□□□□ 0.03
Trav4-3A0A0B4J1K1 Mpzl1-201ENSMUST00000068705 2171 ntTSL 1 (best) BASIC15.22■□□□□ 0.03
Trav4-3A0A0B4J1K1 Cdkl3-205ENSMUST00000109078 2216 ntAPPRIS ALT2 TSL 1 (best) BASIC15.22■□□□□ 0.03
Trav4-3A0A0B4J1K1 Ewsr1-205ENSMUST00000102930 2174 ntAPPRIS ALT2 TSL 5 BASIC15.22■□□□□ 0.03
Trav4-3A0A0B4J1K1 Gipc1-201ENSMUST00000019577 1522 ntAPPRIS P1 TSL 1 (best) BASIC15.22■□□□□ 0.03
Trav4-3A0A0B4J1K1 Cacna2d2-201ENSMUST00000010210 5783 ntAPPRIS ALT2 TSL 1 (best) BASIC15.22■□□□□ 0.03
Trav4-3A0A0B4J1K1 Rap1a-201ENSMUST00000090678 2407 ntAPPRIS P1 TSL 1 (best) BASIC15.22■□□□□ 0.03
Trav4-3A0A0B4J1K1 Cacnb3-202ENSMUST00000109150 2670 ntTSL 5 BASIC15.21■□□□□ 0.03
Trav4-3A0A0B4J1K1 Etv4-202ENSMUST00000107176 2377 ntTSL 1 (best) BASIC15.21■□□□□ 0.03
Trav4-3A0A0B4J1K1 Etv4-201ENSMUST00000017868 2395 ntAPPRIS ALT1 TSL 5 BASIC15.21■□□□□ 0.03
Trav4-3A0A0B4J1K1 Snx7-201ENSMUST00000029639 2021 ntAPPRIS P2 TSL 1 (best) BASIC15.21■□□□□ 0.03
Trav4-3A0A0B4J1K1 Marc1-201ENSMUST00000048462 2039 ntAPPRIS P2 TSL 1 (best) BASIC15.21■□□□□ 0.03
Trav4-3A0A0B4J1K1 Slc18a3-201ENSMUST00000191501 2413 ntAPPRIS P1 BASIC15.21■□□□□ 0.03
Trav4-3A0A0B4J1K1 Syce2-202ENSMUST00000136026 1686 ntAPPRIS P3 TSL 1 (best) BASIC15.21■□□□□ 0.03
Trav4-3A0A0B4J1K1 March5-201ENSMUST00000024078 1797 ntAPPRIS P1 TSL 1 (best) BASIC15.21■□□□□ 0.02
Trav4-3A0A0B4J1K1 Tysnd1-201ENSMUST00000020284 2286 ntAPPRIS P1 TSL 1 (best) BASIC15.2■□□□□ 0.02
Trav4-3A0A0B4J1K1 Bcl11b-202ENSMUST00000109887 2522 ntAPPRIS ALT2 TSL 1 (best) BASIC15.2■□□□□ 0.02
Trav4-3A0A0B4J1K1 Ptbp3-208ENSMUST00000172768 2147 ntAPPRIS ALT2 TSL 5 BASIC15.2■□□□□ 0.02
Trav4-3A0A0B4J1K1 Aard-201ENSMUST00000090025 1348 ntAPPRIS P1 TSL 1 (best) BASIC15.2■□□□□ 0.02
Trav4-3A0A0B4J1K1 March9-201ENSMUST00000040307 3037 ntAPPRIS P1 TSL 1 (best) BASIC15.2■□□□□ 0.02
Trav4-3A0A0B4J1K1 Tmem55b-201ENSMUST00000049312 1594 ntAPPRIS ALT1 TSL 1 (best) BASIC15.2■□□□□ 0.02
Trav4-3A0A0B4J1K1 Lbx1-201ENSMUST00000099401 2484 ntAPPRIS P1 TSL 1 (best) BASIC15.2■□□□□ 0.02
Trav4-3A0A0B4J1K1 Gm4419-202ENSMUST00000226239 1431 ntBASIC15.2■□□□□ 0.02
Trav4-3A0A0B4J1K1 Gm42984-201ENSMUST00000195990 987 ntTSL 1 (best) BASIC15.2■□□□□ 0.02
Trav4-3A0A0B4J1K1 Slc10a3-201ENSMUST00000037967 2023 ntAPPRIS P2 TSL 1 (best) BASIC15.2■□□□□ 0.02
Trav4-3A0A0B4J1K1 Rapgefl1-202ENSMUST00000107479 4855 ntAPPRIS P1 TSL 5 BASIC15.2■□□□□ 0.02
Trav4-3A0A0B4J1K1 Gng12-204ENSMUST00000114225 1876 ntAPPRIS P1 TSL 1 (best) BASIC15.2■□□□□ 0.02
Trav4-3A0A0B4J1K1 Sdccag3-204ENSMUST00000114102 2193 ntAPPRIS P3 TSL 1 (best) BASIC15.19■□□□□ 0.02
Trav4-3A0A0B4J1K1 Crip2-201ENSMUST00000084882 1439 ntAPPRIS P1 TSL 1 (best) BASIC15.19■□□□□ 0.02
Trav4-3A0A0B4J1K1 Rufy1-201ENSMUST00000020643 2688 ntAPPRIS P1 TSL 1 (best) BASIC15.19■□□□□ 0.02
Trav4-3A0A0B4J1K1 Il3ra-201ENSMUST00000090591 1614 ntAPPRIS P2 TSL 1 (best) BASIC15.19■□□□□ 0.02
Trav4-3A0A0B4J1K1 Npas1-201ENSMUST00000002053 2091 ntAPPRIS P1 TSL 5 BASIC15.19■□□□□ 0.02
Trav4-3A0A0B4J1K1 Eid2-201ENSMUST00000059596 1392 ntAPPRIS P1 BASIC15.19■□□□□ 0.02
Trav4-3A0A0B4J1K1 Rfx5-204ENSMUST00000107255 2350 ntAPPRIS P1 TSL 5 BASIC15.19■□□□□ 0.02
Trav4-3A0A0B4J1K1 Idh3a-205ENSMUST00000217484 2580 ntTSL 1 (best) BASIC15.19■□□□□ 0.02
Trav4-3A0A0B4J1K1 Aspscr1-202ENSMUST00000103016 1689 ntTSL 5 BASIC15.19■□□□□ 0.02
Trav4-3A0A0B4J1K1 Cobll1-204ENSMUST00000112430 4917 ntAPPRIS ALT2 TSL 1 (best) BASIC15.18■□□□□ 0.02
Trav4-3A0A0B4J1K1 Ccdc136-206ENSMUST00000145310 1703 ntAPPRIS ALT2 TSL 5 BASIC15.18■□□□□ 0.02
Trav4-3A0A0B4J1K1 Htra3-201ENSMUST00000087629 2750 ntAPPRIS P1 TSL 1 (best) BASIC15.18■□□□□ 0.02
Trav4-3A0A0B4J1K1 Cbln2-204ENSMUST00000169470 2201 ntAPPRIS P1 TSL 1 (best) BASIC15.18■□□□□ 0.02
Trav4-3A0A0B4J1K1 P2rx2-205ENSMUST00000200037 1569 ntAPPRIS ALT2 TSL 1 (best) BASIC15.18■□□□□ 0.02
Trav4-3A0A0B4J1K1 Gm26775-201ENSMUST00000180684 2197 ntTSL 5 BASIC15.18■□□□□ 0.02
Trav4-3A0A0B4J1K1 Usp39-201ENSMUST00000070345 2244 ntAPPRIS P1 TSL 1 (best) BASIC15.17■□□□□ 0.02
Trav4-3A0A0B4J1K1 Ptpre-202ENSMUST00000209256 2593 ntTSL 1 (best) BASIC15.17■□□□□ 0.02
Trav4-3A0A0B4J1K1 Vstm2l-201ENSMUST00000109523 1363 ntAPPRIS P1 TSL 5 BASIC15.17■□□□□ 0.02
Trav4-3A0A0B4J1K1 Gm14121-201ENSMUST00000121441 1380 ntBASIC15.17■□□□□ 0.02
Trav4-3A0A0B4J1K1 Fam20b-202ENSMUST00000122424 4532 ntAPPRIS P1 TSL 5 BASIC15.17■□□□□ 0.02
Trav4-3A0A0B4J1K1 Slc16a10-201ENSMUST00000092566 5397 ntAPPRIS P1 TSL 1 (best) BASIC15.17■□□□□ 0.02
Trav4-3A0A0B4J1K1 Hoxd1-201ENSMUST00000047793 1862 ntAPPRIS P1 TSL 1 (best) BASIC15.16■□□□□ 0.02
Trav4-3A0A0B4J1K1 Srsf10-203ENSMUST00000102544 2225 ntTSL 1 (best) BASIC15.16■□□□□ 0.02
Trav4-3A0A0B4J1K1 Cnnm4-201ENSMUST00000153128 4547 ntAPPRIS P1 TSL 1 (best) BASIC15.16■□□□□ 0.02
Trav4-3A0A0B4J1K1 Prpsap2-201ENSMUST00000004955 1837 ntAPPRIS P1 TSL 1 (best) BASIC15.16■□□□□ 0.02
Trav4-3A0A0B4J1K1 Pm20d2-201ENSMUST00000098181 1445 ntAPPRIS P1 TSL 5 BASIC15.16■□□□□ 0.02
Trav4-3A0A0B4J1K1 Mpzl1-202ENSMUST00000111435 2285 ntAPPRIS P1 TSL 1 (best) BASIC15.15■□□□□ 0.02
Trav4-3A0A0B4J1K1 Rpsa-204ENSMUST00000217317 1599 ntAPPRIS P1 TSL 1 (best) BASIC15.15■□□□□ 0.02
Trav4-3A0A0B4J1K1 Fbxl3-204ENSMUST00000132004 2534 ntTSL 1 (best) BASIC15.15■□□□□ 0.02
Trav4-3A0A0B4J1K1 Tle1-205ENSMUST00000107337 2067 ntTSL 1 (best) BASIC15.15■□□□□ 0.02
Trav4-3A0A0B4J1K1 Atpaf1-203ENSMUST00000176047 2330 ntAPPRIS P1 TSL 1 (best) BASIC15.15■□□□□ 0.02
Trav4-3A0A0B4J1K1 Nectin1-201ENSMUST00000034510 5653 ntAPPRIS P1 TSL 1 (best) BASIC15.15■□□□□ 0.02
Trav4-3A0A0B4J1K1 Prph-201ENSMUST00000024249 1769 ntAPPRIS ALT2 TSL 1 (best) BASIC15.15■□□□□ 0.02
Trav4-3A0A0B4J1K1 Gse1-203ENSMUST00000120493 4610 ntAPPRIS ALT2 TSL 1 (best) BASIC15.15■□□□□ 0.02
Trav4-3A0A0B4J1K1 Npr3-205ENSMUST00000228603 2437 ntAPPRIS ALT2 BASIC15.15■□□□□ 0.02
Trav4-3A0A0B4J1K1 Arglu1-201ENSMUST00000048545 3197 ntAPPRIS P1 TSL 2 BASIC15.15■□□□□ 0.02
Trav4-3A0A0B4J1K1 Arhgap23-202ENSMUST00000107601 5450 ntTSL 5 BASIC15.15■□□□□ 0.02
Trav4-3A0A0B4J1K1 Nudt9-201ENSMUST00000031250 1488 ntAPPRIS P1 TSL 1 (best) BASIC15.14■□□□□ 0.01
Retrieved 100 of 76,532 protein–RNA pairs in 113.9 ms