Protein–RNA interactions for Protein: Q9Y5H4

PCDHGA1, Protocadherin gamma-A1, humanhuman

Predictions only

Length 931 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PCDHGA1Q9Y5H4 CLN3-255ENST00000637100 1284 ntTSL 5 BASIC17.07■□□□□ 0.32
PCDHGA1Q9Y5H4 HTRA4-201ENST00000302495 2095 ntAPPRIS P1 TSL 1 (best) BASIC17.07■□□□□ 0.32
PCDHGA1Q9Y5H4 P2RX5-202ENST00000345901 2031 ntTSL 5 BASIC17.07■□□□□ 0.32
PCDHGA1Q9Y5H4 PLD3-205ENST00000409419 1966 ntAPPRIS P1 TSL 5 BASIC17.07■□□□□ 0.32
PCDHGA1Q9Y5H4 AC093627.4-201ENST00000484550 5008 ntTSL 2 BASIC17.07■□□□□ 0.32
PCDHGA1Q9Y5H4 NLRP6-201ENST00000312165 2679 ntAPPRIS P3 TSL 1 (best) BASIC17.07■□□□□ 0.32
PCDHGA1Q9Y5H4 GFAP-203ENST00000435360 1779 ntTSL 2 BASIC17.07■□□□□ 0.32
PCDHGA1Q9Y5H4 IL1R1-205ENST00000410023 5143 ntAPPRIS P1 TSL 1 (best) BASIC17.07■□□□□ 0.32
PCDHGA1Q9Y5H4 ANKRD53-202ENST00000360589 1666 ntAPPRIS ALT2 TSL 2 BASIC17.07■□□□□ 0.32
PCDHGA1Q9Y5H4 ANKRD13D-201ENST00000308440 2219 ntTSL 2 BASIC17.06■□□□□ 0.32
PCDHGA1Q9Y5H4 ZAR1L-202ENST00000533490 1564 ntAPPRIS P1 TSL 5 BASIC17.06■□□□□ 0.32
PCDHGA1Q9Y5H4 AL691447.2-201ENST00000454869 2162 ntTSL 2 BASIC17.06■□□□□ 0.32
PCDHGA1Q9Y5H4 DBNL-213ENST00000452943 1513 ntTSL 2 BASIC17.06■□□□□ 0.32
PCDHGA1Q9Y5H4 OGFOD2-224ENST00000545612 1465 ntTSL 2 BASIC17.06■□□□□ 0.32
PCDHGA1Q9Y5H4 TLX2-204ENST00000621092 1452 ntTSL 1 (best) BASIC17.06■□□□□ 0.32
PCDHGA1Q9Y5H4 RANBP10-201ENST00000317506 5341 ntAPPRIS P2 TSL 1 (best) BASIC17.06■□□□□ 0.32
PCDHGA1Q9Y5H4 RANBP10-209ENST00000630626 5305 ntAPPRIS ALT2 TSL 5 BASIC17.06■□□□□ 0.32
PCDHGA1Q9Y5H4 CYP4F8-210ENST00000612078 1889 ntAPPRIS P1 TSL 1 (best) BASIC17.06■□□□□ 0.32
PCDHGA1Q9Y5H4 ZNF281-202ENST00000367352 2933 ntAPPRIS ALT2 TSL 2 BASIC17.06■□□□□ 0.32
PCDHGA1Q9Y5H4 ESM1-201ENST00000381403 1326 ntTSL 1 (best) BASIC17.06■□□□□ 0.32
PCDHGA1Q9Y5H4 SHROOM1-202ENST00000378676 2352 ntAPPRIS ALT2 TSL 5 BASIC17.06■□□□□ 0.32
PCDHGA1Q9Y5H4 PPP1R12C-202ENST00000435544 2363 ntTSL 2 BASIC17.06■□□□□ 0.32
PCDHGA1Q9Y5H4 MFSD1-219ENST00000622669 2361 ntTSL 1 (best) BASIC17.06■□□□□ 0.32
PCDHGA1Q9Y5H4 SPACA4-201ENST00000321762 972 ntAPPRIS P1 BASIC17.06■□□□□ 0.32
PCDHGA1Q9Y5H4 CRADD-201ENST00000332896 1169 ntAPPRIS P1 TSL 1 (best) BASIC17.06■□□□□ 0.32
PCDHGA1Q9Y5H4 TMEM205-201ENST00000354882 1034 ntAPPRIS P1 TSL 1 (best) BASIC17.06■□□□□ 0.32
PCDHGA1Q9Y5H4 RFXANK-203ENST00000407360 1212 ntAPPRIS P1 TSL 1 (best) BASIC17.06■□□□□ 0.32
PCDHGA1Q9Y5H4 AL020989.1-201ENST00000422979 469 ntBASIC17.06■□□□□ 0.32
PCDHGA1Q9Y5H4 CNN2P11-201ENST00000429351 262 ntBASIC17.06■□□□□ 0.32
PCDHGA1Q9Y5H4 HTR5BP-201ENST00000430851 1154 ntBASIC17.06■□□□□ 0.32
PCDHGA1Q9Y5H4 AC119403.1-201ENST00000520090 776 ntTSL 5 BASIC17.06■□□□□ 0.32
PCDHGA1Q9Y5H4 SPATA33-208ENST00000568929 1264 ntAPPRIS ALT2 TSL 2 BASIC17.06■□□□□ 0.32
PCDHGA1Q9Y5H4 LINC00668-203ENST00000579012 605 ntTSL 3 BASIC17.06■□□□□ 0.32
PCDHGA1Q9Y5H4 TMEM205-205ENST00000586590 677 ntAPPRIS P1 TSL 5 BASIC17.06■□□□□ 0.32
PCDHGA1Q9Y5H4 TMEM205-207ENST00000586956 1003 ntAPPRIS P1 TSL 2 BASIC17.06■□□□□ 0.32
PCDHGA1Q9Y5H4 AC073592.5-201ENST00000624854 528 ntBASIC17.06■□□□□ 0.32
PCDHGA1Q9Y5H4 LAPTM4B-204ENST00000619747 2758 ntTSL 1 (best) BASIC17.06■□□□□ 0.32
PCDHGA1Q9Y5H4 RCCD1-201ENST00000394258 2689 ntAPPRIS P2 TSL 1 (best) BASIC17.06■□□□□ 0.32
PCDHGA1Q9Y5H4 CMTM3-201ENST00000361909 2159 ntAPPRIS P1 TSL 1 (best) BASIC17.06■□□□□ 0.32
PCDHGA1Q9Y5H4 SAMD11-213ENST00000618181 2179 ntAPPRIS ALT2 TSL 5 BASIC17.06■□□□□ 0.32
PCDHGA1Q9Y5H4 TRMT44-205ENST00000513449 1666 ntAPPRIS ALT2 TSL 1 (best) BASIC17.06■□□□□ 0.32
PCDHGA1Q9Y5H4 QSOX2-201ENST00000358701 4530 ntAPPRIS P1 TSL 2 BASIC17.06■□□□□ 0.32
PCDHGA1Q9Y5H4 SYNM-202ENST00000336292 7394 ntAPPRIS P4 TSL 1 (best) BASIC17.06■□□□□ 0.32
PCDHGA1Q9Y5H4 AC026471.1-201ENST00000564629 3026 ntBASIC17.06■□□□□ 0.32
PCDHGA1Q9Y5H4 NAF1-202ENST00000422287 1604 ntAPPRIS ALT2 TSL 1 (best) BASIC17.06■□□□□ 0.32
PCDHGA1Q9Y5H4 RBM15B-201ENST00000563281 6641 ntAPPRIS P1 BASIC17.06■□□□□ 0.32
PCDHGA1Q9Y5H4 ALDH2-202ENST00000416293 1572 ntTSL 2 BASIC17.06■□□□□ 0.32
PCDHGA1Q9Y5H4 GPAT2P1-202ENST00000471661 1569 ntTSL 2 BASIC17.06■□□□□ 0.32
PCDHGA1Q9Y5H4 DPYSL4-202ENST00000368627 1545 ntTSL 5 BASIC17.06■□□□□ 0.32
PCDHGA1Q9Y5H4 WIPI2-211ENST00000484262 1504 ntTSL 1 (best) BASIC17.06■□□□□ 0.32
PCDHGA1Q9Y5H4 DRD5-201ENST00000304374 2330 ntAPPRIS P1 BASIC17.05■□□□□ 0.32
PCDHGA1Q9Y5H4 CD82-201ENST00000227155 2289 ntAPPRIS P1 TSL 1 (best) BASIC17.05■□□□□ 0.32
PCDHGA1Q9Y5H4 AZIN2-203ENST00000373441 1443 ntTSL 1 (best) BASIC17.05■□□□□ 0.32
PCDHGA1Q9Y5H4 GGN-201ENST00000334928 2239 ntAPPRIS P1 TSL 1 (best) BASIC17.05■□□□□ 0.32
PCDHGA1Q9Y5H4 GSDMD-201ENST00000262580 1762 ntAPPRIS P2 TSL 1 (best) BASIC17.05■□□□□ 0.32
PCDHGA1Q9Y5H4 KRT85-202ENST00000544265 1387 ntTSL 2 BASIC17.05■□□□□ 0.32
PCDHGA1Q9Y5H4 VSTM2A-203ENST00000404951 2521 ntTSL 5 BASIC17.05■□□□□ 0.32
PCDHGA1Q9Y5H4 MATN4-202ENST00000360607 2127 ntTSL 1 (best) BASIC17.05■□□□□ 0.32
PCDHGA1Q9Y5H4 HR-202ENST00000381418 6336 ntAPPRIS P1 TSL 1 (best) BASIC17.05■□□□□ 0.32
PCDHGA1Q9Y5H4 PYCR1-217ENST00000629768 1740 ntTSL 5 BASIC17.05■□□□□ 0.32
PCDHGA1Q9Y5H4 TEAD2-202ENST00000377214 2440 ntAPPRIS ALT1 TSL 2 BASIC17.05■□□□□ 0.32
PCDHGA1Q9Y5H4 ZNF787-202ENST00000587279 1657 ntTSL 2 BASIC17.05■□□□□ 0.32
PCDHGA1Q9Y5H4 AC005332.7-201ENST00000614046 2005 ntBASIC17.05■□□□□ 0.32
PCDHGA1Q9Y5H4 IGKV4-1-201ENST00000390243 538 ntAPPRIS P1 BASIC17.05■□□□□ 0.32
PCDHGA1Q9Y5H4 FAM19A5-204ENST00000406880 833 ntTSL 3 BASIC17.05■□□□□ 0.32
PCDHGA1Q9Y5H4 TSTD1-204ENST00000423014 593 ntAPPRIS ALT2 TSL 2 BASIC17.05■□□□□ 0.32
PCDHGA1Q9Y5H4 AC005281.1-201ENST00000433040 911 ntTSL 5 BASIC17.05■□□□□ 0.32
PCDHGA1Q9Y5H4 AC005020.2-201ENST00000455905 830 ntAPPRIS P1 TSL 3 BASIC17.05■□□□□ 0.32
PCDHGA1Q9Y5H4 ALG1L5P-201ENST00000482043 771 ntBASIC17.05■□□□□ 0.32
PCDHGA1Q9Y5H4 AP002472.1-201ENST00000577490 586 ntBASIC17.05■□□□□ 0.32
PCDHGA1Q9Y5H4 AC008761.1-201ENST00000595363 217 ntTSL 5 BASIC17.05■□□□□ 0.32
PCDHGA1Q9Y5H4 COL13A1-201ENST00000354547 3027 ntAPPRIS ALT2 TSL 5 BASIC17.05■□□□□ 0.32
PCDHGA1Q9Y5H4 CHRNA10-201ENST00000250699 1945 ntAPPRIS P1 TSL 1 (best) BASIC17.05■□□□□ 0.32
PCDHGA1Q9Y5H4 ATG3-201ENST00000283290 1570 ntAPPRIS P1 TSL 1 (best) BASIC17.05■□□□□ 0.32
PCDHGA1Q9Y5H4 AC138969.1-205ENST00000381497 1552 ntAPPRIS P1 TSL 1 (best) BASIC17.05■□□□□ 0.32
PCDHGA1Q9Y5H4 AC010460.3-201ENST00000511359 1579 ntBASIC17.05■□□□□ 0.32
PCDHGA1Q9Y5H4 AC004817.3-201ENST00000602957 2129 ntBASIC17.05■□□□□ 0.32
PCDHGA1Q9Y5H4 RER1-202ENST00000378512 1404 ntTSL 1 (best) BASIC17.04■□□□□ 0.32
PCDHGA1Q9Y5H4 DHRS2-201ENST00000250383 1705 ntAPPRIS P3 TSL 1 (best) BASIC17.04■□□□□ 0.32
PCDHGA1Q9Y5H4 IDH3G-202ENST00000370092 1712 ntTSL 5 BASIC17.04■□□□□ 0.32
PCDHGA1Q9Y5H4 TMEM177-204ENST00000424086 1738 ntAPPRIS P1 TSL 2 BASIC17.04■□□□□ 0.32
PCDHGA1Q9Y5H4 NKX6-1-201ENST00000295886 2628 ntAPPRIS P1 TSL 1 (best) BASIC17.04■□□□□ 0.32
PCDHGA1Q9Y5H4 FLYWCH1-201ENST00000253928 5037 ntAPPRIS ALT2 TSL 1 (best) BASIC17.04■□□□□ 0.32
PCDHGA1Q9Y5H4 DUOXA1-201ENST00000267803 1996 ntTSL 1 (best) BASIC17.04■□□□□ 0.32
PCDHGA1Q9Y5H4 ARID1B-202ENST00000346085 10194 ntAPPRIS ALT2 TSL 1 (best) BASIC17.04■□□□□ 0.32
PCDHGA1Q9Y5H4 CACNA1A-227ENST00000636549 6792 ntAPPRIS ALT2 TSL 5 BASIC17.04■□□□□ 0.32
PCDHGA1Q9Y5H4 ANTXR1-203ENST00000409829 2221 ntTSL 1 (best) BASIC17.04■□□□□ 0.32
PCDHGA1Q9Y5H4 EPN3-216ENST00000537145 2223 ntTSL 5 BASIC17.04■□□□□ 0.32
PCDHGA1Q9Y5H4 PRICKLE4-204ENST00000458694 1646 ntAPPRIS P2 TSL 5 BASIC17.04■□□□□ 0.32
PCDHGA1Q9Y5H4 NFATC1-217ENST00000591814 4819 ntAPPRIS ALT2 TSL 1 (best) BASIC17.04■□□□□ 0.32
PCDHGA1Q9Y5H4 SKOR2-202ENST00000425639 3899 ntAPPRIS ALT2 TSL 5 BASIC17.04■□□□□ 0.32
PCDHGA1Q9Y5H4 GMCL1P1-201ENST00000463439 1581 ntBASIC17.04■□□□□ 0.32
PCDHGA1Q9Y5H4 MYL6-202ENST00000348108 722 ntAPPRIS ALT1 TSL 3 BASIC17.04■□□□□ 0.32
PCDHGA1Q9Y5H4 COX5BP2-201ENST00000392354 334 ntBASIC17.04■□□□□ 0.32
PCDHGA1Q9Y5H4 PNMT-202ENST00000394246 821 ntTSL 2 BASIC17.04■□□□□ 0.32
PCDHGA1Q9Y5H4 AKIRIN1-203ENST00000446189 1243 ntTSL 2 BASIC17.04■□□□□ 0.32
PCDHGA1Q9Y5H4 HCG4B-203ENST00000450128 991 ntBASIC17.04■□□□□ 0.32
PCDHGA1Q9Y5H4 PON3-205ENST00000451904 1053 ntTSL 3 BASIC17.04■□□□□ 0.32
PCDHGA1Q9Y5H4 IGHV3-65-201ENST00000523210 341 ntBASIC17.04■□□□□ 0.32
PCDHGA1Q9Y5H4 AC027243.1-201ENST00000559539 758 ntTSL 3 BASIC17.04■□□□□ 0.32
Retrieved 100 of 98,524 protein–RNA pairs in 24 ms