Protein–RNA interactions for Protein: Q8N6Y0

USHBP1, Usher syndrome type-1C protein-binding protein 1, humanhuman

Predictions only

Length 703 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
USHBP1Q8N6Y0 WWOX-204ENST00000408984 1227 ntTSL 1 (best) BASIC23.38■■□□□ 1.33
USHBP1Q8N6Y0 KLF4P1-201ENST00000412782 1185 ntBASIC23.38■■□□□ 1.33
USHBP1Q8N6Y0 SLC4A1APP2-201ENST00000424054 1259 ntBASIC23.38■■□□□ 1.33
USHBP1Q8N6Y0 HMGN1P19-201ENST00000436976 333 ntBASIC23.38■■□□□ 1.33
USHBP1Q8N6Y0 DNAJB3-202ENST00000449667 1266 ntBASIC23.38■■□□□ 1.33
USHBP1Q8N6Y0 AC130456.4-201ENST00000568635 665 ntTSL 2 BASIC23.38■■□□□ 1.33
USHBP1Q8N6Y0 AC109462.3-201ENST00000573934 613 ntBASIC23.38■■□□□ 1.33
USHBP1Q8N6Y0 BCS1L-202ENST00000392109 1583 ntAPPRIS P1 TSL 1 (best) BASIC23.38■■□□□ 1.33
USHBP1Q8N6Y0 BCS1L-204ENST00000392111 1584 ntAPPRIS P1 TSL 1 (best) BASIC23.38■■□□□ 1.33
USHBP1Q8N6Y0 LRCH3-207ENST00000441090 2034 ntTSL 2 BASIC23.38■■□□□ 1.33
USHBP1Q8N6Y0 KCNN4-209ENST00000615047 2029 ntTSL 5 BASIC23.38■■□□□ 1.33
USHBP1Q8N6Y0 GMPPA-204ENST00000373908 1501 ntAPPRIS P1 TSL 5 BASIC23.38■■□□□ 1.33
USHBP1Q8N6Y0 ALG3-201ENST00000397676 1528 ntAPPRIS P1 TSL 1 (best) BASIC23.38■■□□□ 1.33
USHBP1Q8N6Y0 NSUN5-201ENST00000252594 1672 ntAPPRIS ALT2 TSL 1 (best) BASIC23.38■■□□□ 1.33
USHBP1Q8N6Y0 TXNRD3-202ENST00000523403 2351 ntAPPRIS ALT2 TSL 2 BASIC23.37■■□□□ 1.33
USHBP1Q8N6Y0 CCDC115-201ENST00000259229 1646 ntAPPRIS P1 TSL 1 (best) BASIC23.37■■□□□ 1.33
USHBP1Q8N6Y0 PIP4K2A-202ENST00000376573 3802 ntAPPRIS P1 TSL 1 (best) BASIC23.37■■□□□ 1.33
USHBP1Q8N6Y0 LSM11-201ENST00000286307 6584 ntAPPRIS P1 TSL 1 (best) BASIC23.37■■□□□ 1.33
USHBP1Q8N6Y0 KCNQ2-205ENST00000360480 2775 ntAPPRIS ALT2 TSL 5 BASIC23.37■■□□□ 1.33
USHBP1Q8N6Y0 SLC23A3-207ENST00000455516 2048 ntTSL 2 BASIC23.37■■□□□ 1.33
USHBP1Q8N6Y0 PAK4-209ENST00000599470 1715 ntTSL 1 (best) BASIC23.37■■□□□ 1.33
USHBP1Q8N6Y0 AK1-203ENST00000373176 2266 ntAPPRIS P1 TSL 1 (best) BASIC23.37■■□□□ 1.33
USHBP1Q8N6Y0 GUCA2A-201ENST00000357001 569 ntAPPRIS P1 TSL 1 (best) BASIC23.37■■□□□ 1.33
USHBP1Q8N6Y0 GUK1-203ENST00000366718 1275 ntAPPRIS P3 TSL 3 BASIC23.37■■□□□ 1.33
USHBP1Q8N6Y0 MRPL55-208ENST00000366734 990 ntAPPRIS P1 TSL 2 BASIC23.37■■□□□ 1.33
USHBP1Q8N6Y0 MRPL55-217ENST00000366746 565 ntAPPRIS P1 TSL 1 (best) BASIC23.37■■□□□ 1.33
USHBP1Q8N6Y0 EGFL7-203ENST00000371699 2125 ntAPPRIS P1 TSL 2 BASIC23.37■■□□□ 1.33
USHBP1Q8N6Y0 FCN1-201ENST00000371806 1286 ntAPPRIS P1 TSL 1 (best) BASIC23.37■■□□□ 1.33
USHBP1Q8N6Y0 HDAC11-202ENST00000402259 1000 ntTSL 3 BASIC23.37■■□□□ 1.33
USHBP1Q8N6Y0 RFXANK-203ENST00000407360 1212 ntAPPRIS P1 TSL 1 (best) BASIC23.37■■□□□ 1.33
USHBP1Q8N6Y0 MCFD2-205ENST00000409218 648 ntAPPRIS P1 TSL 2 BASIC23.37■■□□□ 1.33
USHBP1Q8N6Y0 AL122058.1-202ENST00000426580 252 ntTSL 3 BASIC23.37■■□□□ 1.33
USHBP1Q8N6Y0 LYRM1-209ENST00000568663 857 ntAPPRIS P1 TSL 4 BASIC23.37■■□□□ 1.33
USHBP1Q8N6Y0 NUTF2-206ENST00000569436 1119 ntAPPRIS P1 TSL 2 BASIC23.37■■□□□ 1.33
USHBP1Q8N6Y0 PGM5P2-202ENST00000637225 1043 ntBASIC23.37■■□□□ 1.33
USHBP1Q8N6Y0 PML-211ENST00000564428 1985 ntAPPRIS ALT2 TSL 1 (best) BASIC23.37■■□□□ 1.33
USHBP1Q8N6Y0 FAM160A2-201ENST00000265978 3481 ntAPPRIS P3 TSL 1 (best) BASIC23.37■■□□□ 1.33
USHBP1Q8N6Y0 TBC1D10C-203ENST00000526387 1520 ntTSL 2 BASIC23.37■■□□□ 1.33
USHBP1Q8N6Y0 IDUA-201ENST00000247933 2163 ntAPPRIS P1 TSL 1 (best) BASIC23.37■■□□□ 1.33
USHBP1Q8N6Y0 DDX59-201ENST00000331314 2289 ntAPPRIS P1 TSL 1 (best) BASIC23.36■■□□□ 1.33
USHBP1Q8N6Y0 GNAZ-203ENST00000615612 3333 ntAPPRIS P1 TSL 1 (best) BASIC23.36■■□□□ 1.33
USHBP1Q8N6Y0 CAMKK2-207ENST00000404169 2116 ntAPPRIS P4 TSL 1 (best) BASIC23.36■■□□□ 1.33
USHBP1Q8N6Y0 PTHLH-203ENST00000395872 1318 ntAPPRIS ALT1 TSL 5 BASIC23.36■■□□□ 1.33
USHBP1Q8N6Y0 EHBP1-209ENST00000431489 5076 ntAPPRIS ALT2 TSL 1 (best) BASIC23.36■■□□□ 1.33
USHBP1Q8N6Y0 CRADD-201ENST00000332896 1169 ntAPPRIS P1 TSL 1 (best) BASIC23.36■■□□□ 1.33
USHBP1Q8N6Y0 HELT-201ENST00000338875 1008 ntTSL 1 (best) BASIC23.36■■□□□ 1.33
USHBP1Q8N6Y0 PTTG1-202ENST00000393964 1070 ntAPPRIS P1 TSL 1 (best) BASIC23.36■■□□□ 1.33
USHBP1Q8N6Y0 COA5-202ENST00000409997 557 ntTSL 4 BASIC23.36■■□□□ 1.33
USHBP1Q8N6Y0 CPSF1-207ENST00000531727 704 ntTSL 3 BASIC23.36■■□□□ 1.33
USHBP1Q8N6Y0 AC027796.2-201ENST00000575326 344 ntBASIC23.36■■□□□ 1.33
USHBP1Q8N6Y0 MIR4751-201ENST00000578027 74 ntBASIC23.36■■□□□ 1.33
USHBP1Q8N6Y0 ARMC7-204ENST00000582136 1204 ntTSL 2 BASIC23.36■■□□□ 1.33
USHBP1Q8N6Y0 NAA60-201ENST00000360862 2522 ntTSL 2 BASIC23.36■■□□□ 1.33
USHBP1Q8N6Y0 REPS1-203ENST00000409812 2511 ntTSL 1 (best) BASIC23.36■■□□□ 1.33
USHBP1Q8N6Y0 POR-209ENST00000439269 1858 ntTSL 2 BASIC23.36■■□□□ 1.33
USHBP1Q8N6Y0 LINC02138-201ENST00000378340 1326 ntTSL 2 BASIC23.35■■□□□ 1.33
USHBP1Q8N6Y0 PRRG3-205ENST00000538575 1303 ntAPPRIS P1 TSL 5 BASIC23.35■■□□□ 1.33
USHBP1Q8N6Y0 SQOR-201ENST00000260324 2003 ntAPPRIS P1 TSL 1 (best) BASIC23.35■■□□□ 1.33
USHBP1Q8N6Y0 RER1-202ENST00000378512 1404 ntTSL 1 (best) BASIC23.35■■□□□ 1.33
USHBP1Q8N6Y0 WIPI2-211ENST00000484262 1504 ntTSL 1 (best) BASIC23.35■■□□□ 1.33
USHBP1Q8N6Y0 NSDHL-203ENST00000440023 1630 ntAPPRIS P2 TSL 5 BASIC23.35■■□□□ 1.33
USHBP1Q8N6Y0 RPL36-201ENST00000347512 707 ntAPPRIS P1 TSL 1 (best) BASIC23.35■■□□□ 1.33
USHBP1Q8N6Y0 AL135791.1-201ENST00000429214 826 ntTSL 5 BASIC23.35■■□□□ 1.33
USHBP1Q8N6Y0 AL391650.1-205ENST00000433939 579 ntAPPRIS P1 TSL 3 BASIC23.35■■□□□ 1.33
USHBP1Q8N6Y0 CDKN2A-209ENST00000498628 926 ntTSL 2 BASIC23.35■■□□□ 1.33
USHBP1Q8N6Y0 HOPX-214ENST00000556614 1138 ntAPPRIS P1 TSL 1 (best) BASIC23.35■■□□□ 1.33
USHBP1Q8N6Y0 ZEB1-AS1-209ENST00000607455 559 ntTSL 4 BASIC23.35■■□□□ 1.33
USHBP1Q8N6Y0 AL596442.2-201ENST00000610240 980 ntBASIC23.35■■□□□ 1.33
USHBP1Q8N6Y0 AL513190.1-201ENST00000621254 727 ntBASIC23.35■■□□□ 1.33
USHBP1Q8N6Y0 MCCC2-209ENST00000629193 1128 ntTSL 1 (best) BASIC23.35■■□□□ 1.33
USHBP1Q8N6Y0 SMARCC2-203ENST00000394023 4271 ntAPPRIS ALT2 TSL 1 (best) BASIC23.35■■□□□ 1.33
USHBP1Q8N6Y0 FIP1L1-203ENST00000358575 2180 ntAPPRIS P4 TSL 2 BASIC23.35■■□□□ 1.33
USHBP1Q8N6Y0 NKIRAS2-207ENST00000449471 1461 ntTSL 2 BASIC23.35■■□□□ 1.33
USHBP1Q8N6Y0 SLC9A6-202ENST00000370698 4631 ntTSL 1 (best) BASIC23.35■■□□□ 1.33
USHBP1Q8N6Y0 TRH-202ENST00000507066 1580 ntAPPRIS ALT1 TSL 5 BASIC23.35■■□□□ 1.33
USHBP1Q8N6Y0 PRRT2-216ENST00000637403 2033 ntTSL 5 BASIC23.35■■□□□ 1.33
USHBP1Q8N6Y0 PPP2R5A-201ENST00000261461 3128 ntAPPRIS P1 TSL 1 (best) BASIC23.35■■□□□ 1.33
USHBP1Q8N6Y0 AC008969.1-203ENST00000313957 1897 ntTSL 2 BASIC23.34■■□□□ 1.33
USHBP1Q8N6Y0 DPYSL4-202ENST00000368627 1545 ntTSL 5 BASIC23.34■■□□□ 1.33
USHBP1Q8N6Y0 GHRHR-201ENST00000326139 1602 ntAPPRIS P1 TSL 1 (best) BASIC23.34■■□□□ 1.33
USHBP1Q8N6Y0 ASIC3-201ENST00000297512 1718 ntTSL 1 (best) BASIC23.34■■□□□ 1.33
USHBP1Q8N6Y0 SIGLEC6-203ENST00000359982 1811 ntAPPRIS ALT2 TSL 2 BASIC23.34■■□□□ 1.33
USHBP1Q8N6Y0 PANK1-201ENST00000307534 6976 ntTSL 1 (best) BASIC23.34■■□□□ 1.33
USHBP1Q8N6Y0 KIRREL2-205ENST00000592409 2563 ntAPPRIS ALT2 TSL 1 (best) BASIC23.34■■□□□ 1.33
USHBP1Q8N6Y0 ZNF593-201ENST00000270812 698 ntTSL 2 BASIC23.34■■□□□ 1.33
USHBP1Q8N6Y0 ATP5G3-202ENST00000392541 842 ntAPPRIS P1 TSL 1 (best) BASIC23.34■■□□□ 1.33
USHBP1Q8N6Y0 HYAL1-206ENST00000447605 666 ntTSL 1 (best) BASIC23.34■■□□□ 1.33
USHBP1Q8N6Y0 ARTN-206ENST00000472435 402 ntTSL 3 BASIC23.34■■□□□ 1.33
USHBP1Q8N6Y0 LEKR1-211ENST00000498839 616 ntTSL 3 BASIC23.34■■□□□ 1.33
USHBP1Q8N6Y0 HADHB-208ENST00000537713 2142 ntTSL 2 BASIC23.34■■□□□ 1.33
USHBP1Q8N6Y0 AL390334.1-205ENST00000555797 411 ntTSL 3 BASIC23.34■■□□□ 1.33
USHBP1Q8N6Y0 COQ7-208ENST00000568985 714 ntAPPRIS P3 TSL 2 BASIC23.34■■□□□ 1.33
USHBP1Q8N6Y0 MTDHP5-201ENST00000598980 586 ntBASIC23.34■■□□□ 1.33
USHBP1Q8N6Y0 AL355385.1-201ENST00000606123 409 ntBASIC23.34■■□□□ 1.33
USHBP1Q8N6Y0 LRRC23-215ENST00000622489 1061 ntTSL 5 BASIC23.34■■□□□ 1.33
USHBP1Q8N6Y0 AC004790.2-201ENST00000623588 572 ntBASIC23.34■■□□□ 1.33
USHBP1Q8N6Y0 KMT5B-201ENST00000304363 5837 ntAPPRIS P1 TSL 5 BASIC23.34■■□□□ 1.33
USHBP1Q8N6Y0 NRXN2-201ENST00000265459 6621 ntAPPRIS P3 TSL 5 BASIC23.34■■□□□ 1.33
USHBP1Q8N6Y0 ALDH2-202ENST00000416293 1572 ntTSL 2 BASIC23.34■■□□□ 1.33
USHBP1Q8N6Y0 GATA2-203ENST00000487848 1878 ntAPPRIS P1 TSL 1 (best) BASIC23.34■■□□□ 1.33
Retrieved 100 of 98,524 protein–RNA pairs in 36.7 ms