Protein–RNA interactions for Protein: Q99626

CDX2, Homeobox protein CDX-2, humanhuman

Predicted RBP Predictions only

Length 313 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CDX2Q99626 CYSRT1-201ENST00000409414 1297 ntAPPRIS P1 TSL 1 (best) BASIC18.5■□□□□ 0.55
CDX2Q99626 AL034550.1-201ENST00000442179 986 ntTSL 1 (best) BASIC18.5■□□□□ 0.55
CDX2Q99626 TMEM205-202ENST00000447337 916 ntAPPRIS P1 TSL 2 BASIC18.5■□□□□ 0.55
CDX2Q99626 AC239798.4-201ENST00000609879 700 ntTSL 2 BASIC18.5■□□□□ 0.55
CDX2Q99626 HIST1H2AK-201ENST00000618958 393 ntAPPRIS P1 BASIC18.5■□□□□ 0.55
CDX2Q99626 CLDN6-201ENST00000328796 1369 ntAPPRIS P1 TSL 1 (best) BASIC18.5■□□□□ 0.55
CDX2Q99626 FGF14-IT1-202ENST00000607251 2123 ntTSL 2 BASIC18.5■□□□□ 0.55
CDX2Q99626 ANXA3-201ENST00000264908 1657 ntAPPRIS P1 TSL 1 (best) BASIC18.5■□□□□ 0.55
CDX2Q99626 SEC61A2-201ENST00000298428 1893 ntAPPRIS P1 TSL 1 (best) BASIC18.5■□□□□ 0.55
CDX2Q99626 FUT5-202ENST00000588525 1988 ntAPPRIS P1 TSL 1 (best) BASIC18.5■□□□□ 0.55
CDX2Q99626 AC097637.2-201ENST00000624096 1997 ntBASIC18.5■□□□□ 0.55
CDX2Q99626 KCNQ1-202ENST00000335475 2159 ntAPPRIS ALT2 TSL 1 (best) BASIC18.49■□□□□ 0.55
CDX2Q99626 GPER1-204ENST00000401670 1542 ntAPPRIS P1 TSL 2 BASIC18.49■□□□□ 0.55
CDX2Q99626 LUC7L-221ENST00000629543 1520 ntTSL 5 BASIC18.49■□□□□ 0.55
CDX2Q99626 PAX4-204ENST00000463946 1613 ntTSL 1 (best) BASIC18.49■□□□□ 0.55
CDX2Q99626 NDUFB2-AS1-201ENST00000465466 1648 ntTSL 2 BASIC18.49■□□□□ 0.55
CDX2Q99626 SLC12A9-202ENST00000415287 1912 ntTSL 1 (best) BASIC18.49■□□□□ 0.55
CDX2Q99626 PIANP-204ENST00000540656 2432 ntAPPRIS P3 TSL 2 BASIC18.49■□□□□ 0.55
CDX2Q99626 HIRA-201ENST00000263208 4053 ntAPPRIS P1 TSL 1 (best) BASIC18.49■□□□□ 0.55
CDX2Q99626 PRDX5-202ENST00000347941 463 ntTSL 1 (best) BASIC18.49■□□□□ 0.55
CDX2Q99626 RPS9-203ENST00000391752 772 ntAPPRIS P1 TSL 2 BASIC18.49■□□□□ 0.55
CDX2Q99626 MIR1909-201ENST00000411312 80 ntBASIC18.49■□□□□ 0.55
CDX2Q99626 AC092580.3-201ENST00000430932 139 ntBASIC18.49■□□□□ 0.55
CDX2Q99626 TMEM161B-AS1-212ENST00000513011 833 ntTSL 3 BASIC18.49■□□□□ 0.55
CDX2Q99626 LINC00596-201ENST00000559615 937 ntTSL 5 BASIC18.49■□□□□ 0.55
CDX2Q99626 AL157392.3-207ENST00000601758 744 ntTSL 5 BASIC18.49■□□□□ 0.55
CDX2Q99626 GNRHR2-204ENST00000604273 1078 ntTSL 1 (best) BASIC18.49■□□□□ 0.55
CDX2Q99626 Six3os1_5.1-201ENST00000611000 271 ntBASIC18.49■□□□□ 0.55
CDX2Q99626 R3HDML-201ENST00000217043 1377 ntAPPRIS P1 TSL 1 (best) BASIC18.49■□□□□ 0.55
CDX2Q99626 RNF183-203ENST00000441031 1366 ntAPPRIS P1 TSL 1 (best) BASIC18.49■□□□□ 0.55
CDX2Q99626 TMEM37-201ENST00000306406 1688 ntAPPRIS P1 TSL 1 (best) BASIC18.49■□□□□ 0.55
CDX2Q99626 RBM34-201ENST00000408888 2054 ntAPPRIS P1 TSL 1 (best) BASIC18.49■□□□□ 0.55
CDX2Q99626 ALG9-215ENST00000616540 2069 ntTSL 1 (best) BASIC18.49■□□□□ 0.55
CDX2Q99626 LDLRAD4-211ENST00000587757 2171 ntTSL 2 BASIC18.49■□□□□ 0.55
CDX2Q99626 P4HA3-202ENST00000427714 2248 ntTSL 2 BASIC18.49■□□□□ 0.55
CDX2Q99626 CMTM7-201ENST00000334983 2038 ntAPPRIS P1 TSL 1 (best) BASIC18.49■□□□□ 0.55
CDX2Q99626 MTSS1-203ENST00000431961 1711 ntTSL 1 (best) BASIC18.49■□□□□ 0.55
CDX2Q99626 ENTPD8-204ENST00000472938 1749 ntAPPRIS P1 TSL 1 (best) BASIC18.49■□□□□ 0.55
CDX2Q99626 NDUFV1-216ENST00000529927 1503 ntAPPRIS ALT1 TSL 1 (best) BASIC18.49■□□□□ 0.55
CDX2Q99626 BIN1-207ENST00000357970 2497 ntTSL 1 (best) BASIC18.48■□□□□ 0.55
CDX2Q99626 LGR4-202ENST00000389858 5163 ntTSL 1 (best) BASIC18.48■□□□□ 0.55
CDX2Q99626 TDRD10-202ENST00000368482 2331 ntAPPRIS P3 TSL 1 (best) BASIC18.48■□□□□ 0.55
CDX2Q99626 SIRT6-214ENST00000601488 1361 ntTSL 3 BASIC18.48■□□□□ 0.55
CDX2Q99626 HHIPL1-202ENST00000357223 2241 ntTSL 1 (best) BASIC18.48■□□□□ 0.55
CDX2Q99626 BLZF1-202ENST00000367807 1295 ntTSL 1 (best) BASIC18.48■□□□□ 0.55
CDX2Q99626 CALY-202ENST00000368555 783 ntTSL 2 BASIC18.48■□□□□ 0.55
CDX2Q99626 MECP2-203ENST00000407218 1174 ntTSL 5 BASIC18.48■□□□□ 0.55
CDX2Q99626 AC241585.1-201ENST00000433527 519 ntBASIC18.48■□□□□ 0.55
CDX2Q99626 INTS11-208ENST00000435064 2148 ntAPPRIS P1 TSL 1 (best) BASIC18.48■□□□□ 0.55
CDX2Q99626 SPDYE14P-201ENST00000442619 822 ntBASIC18.48■□□□□ 0.55
CDX2Q99626 TMEM14B-212ENST00000475942 992 ntTSL 2 BASIC18.48■□□□□ 0.55
CDX2Q99626 ZFPL1-207ENST00000526791 384 ntTSL 3 BASIC18.48■□□□□ 0.55
CDX2Q99626 AHSA1-202ENST00000535854 1173 ntTSL 2 BASIC18.48■□□□□ 0.55
CDX2Q99626 AC090515.4-201ENST00000558042 450 ntTSL 3 BASIC18.48■□□□□ 0.55
CDX2Q99626 NAA38-206ENST00000576384 424 ntTSL 2 BASIC18.48■□□□□ 0.55
CDX2Q99626 AP005482.2-201ENST00000587889 310 ntTSL 5 BASIC18.48■□□□□ 0.55
CDX2Q99626 ACTL9-202ENST00000612068 1252 ntBASIC18.48■□□□□ 0.55
CDX2Q99626 NEIL1-206ENST00000564784 2019 ntAPPRIS P1 TSL 2 BASIC18.48■□□□□ 0.55
CDX2Q99626 HRK-201ENST00000257572 5789 ntAPPRIS P1 TSL 1 (best) BASIC18.48■□□□□ 0.55
CDX2Q99626 GABBR2-201ENST00000259455 5788 ntAPPRIS P1 TSL 1 (best) BASIC18.48■□□□□ 0.55
CDX2Q99626 ACHE-205ENST00000419336 1906 ntTSL 1 (best) BASIC18.48■□□□□ 0.55
CDX2Q99626 AP3S1-201ENST00000316788 1730 ntAPPRIS P1 TSL 1 (best) BASIC18.48■□□□□ 0.55
CDX2Q99626 RHNO1-204ENST00000489288 1870 ntAPPRIS P3 TSL 1 (best) BASIC18.48■□□□□ 0.55
CDX2Q99626 LBX2-AS1-201ENST00000548978 1852 ntTSL 3 BASIC18.48■□□□□ 0.55
CDX2Q99626 NR1H3-204ENST00000407404 1330 ntTSL 5 BASIC18.48■□□□□ 0.55
CDX2Q99626 RIPK2-201ENST00000220751 2584 ntAPPRIS P1 TSL 1 (best) BASIC18.47■□□□□ 0.55
CDX2Q99626 RUNDC3B-207ENST00000493037 2020 ntAPPRIS ALT2 TSL 1 (best) BASIC18.47■□□□□ 0.55
CDX2Q99626 MRNIP-201ENST00000292586 1238 ntAPPRIS P4 TSL 1 (best) BASIC18.47■□□□□ 0.55
CDX2Q99626 TAS2R41-201ENST00000408916 924 ntAPPRIS P1 BASIC18.47■□□□□ 0.55
CDX2Q99626 C2orf88-205ENST00000443551 692 ntAPPRIS P1 TSL 1 (best) BASIC18.47■□□□□ 0.55
CDX2Q99626 Z98749.2-207ENST00000443658 679 ntTSL 2 BASIC18.47■□□□□ 0.55
CDX2Q99626 AC124944.1-201ENST00000448113 625 ntTSL 2 BASIC18.47■□□□□ 0.55
CDX2Q99626 PPP6R2P1-201ENST00000450880 1275 ntBASIC18.47■□□□□ 0.55
CDX2Q99626 LEPROTL1-203ENST00000518001 589 ntTSL 4 BASIC18.47■□□□□ 0.55
CDX2Q99626 LINC00824-206ENST00000523173 920 ntTSL 2 BASIC18.47■□□□□ 0.55
CDX2Q99626 SLC25A39-207ENST00000586016 1156 ntTSL 5 BASIC18.47■□□□□ 0.55
CDX2Q99626 ALDH3B1-203ENST00000612297 1231 ntTSL 3 BASIC18.47■□□□□ 0.55
CDX2Q99626 KCNMA1-252ENST00000639120 2308 ntTSL 5 BASIC18.47■□□□□ 0.55
CDX2Q99626 CLEC10A-204ENST00000571664 1442 ntAPPRIS ALT2 TSL 1 (best) BASIC18.47■□□□□ 0.55
CDX2Q99626 RNF38-204ENST00000357058 5254 ntAPPRIS P1 TSL 5 BASIC18.47■□□□□ 0.55
CDX2Q99626 BPHL-203ENST00000380379 1928 ntAPPRIS P1 TSL 1 (best) BASIC18.47■□□□□ 0.55
CDX2Q99626 KIF25-201ENST00000351261 1326 ntTSL 5 BASIC18.47■□□□□ 0.55
CDX2Q99626 GUSB-201ENST00000304895 2300 ntAPPRIS P1 TSL 1 (best) BASIC18.46■□□□□ 0.55
CDX2Q99626 INTS11-250ENST00000620829 1862 ntTSL 2 BASIC18.46■□□□□ 0.55
CDX2Q99626 SH2B1-204ENST00000395532 2529 ntAPPRIS P1 TSL 2 BASIC18.46■□□□□ 0.55
CDX2Q99626 VEGFA-204ENST00000372064 2909 ntTSL 1 (best) BASIC18.46■□□□□ 0.55
CDX2Q99626 ASB12-201ENST00000362002 1289 ntAPPRIS P1 TSL 2 BASIC18.46■□□□□ 0.55
CDX2Q99626 KRTAP6-3-201ENST00000391624 636 ntAPPRIS P1 BASIC18.46■□□□□ 0.55
CDX2Q99626 AL356489.1-201ENST00000449144 1144 ntTSL 3 BASIC18.46■□□□□ 0.55
CDX2Q99626 AC092658.1-201ENST00000505836 891 ntBASIC18.46■□□□□ 0.55
CDX2Q99626 AC114956.2-201ENST00000512498 572 ntTSL 4 BASIC18.46■□□□□ 0.55
CDX2Q99626 AC068228.2-201ENST00000522383 777 ntTSL 3 BASIC18.46■□□□□ 0.55
CDX2Q99626 AC138466.1-201ENST00000535242 391 ntTSL 3 BASIC18.46■□□□□ 0.55
CDX2Q99626 AL135744.1-201ENST00000565098 629 ntBASIC18.46■□□□□ 0.55
CDX2Q99626 FAM192A-212ENST00000566077 1066 ntTSL 3 BASIC18.46■□□□□ 0.55
CDX2Q99626 AC026471.2-201ENST00000569782 655 ntTSL 2 BASIC18.46■□□□□ 0.55
CDX2Q99626 MRPS23-202ENST00000578444 580 ntTSL 2 BASIC18.46■□□□□ 0.55
CDX2Q99626 AC027575.2-201ENST00000585258 1295 ntTSL 1 (best) BASIC18.46■□□□□ 0.55
CDX2Q99626 NTNG1-203ENST00000370066 1443 ntTSL 1 (best) BASIC18.46■□□□□ 0.55
CDX2Q99626 MBL1P-201ENST00000480805 1424 ntTSL 1 (best) BASIC18.46■□□□□ 0.55
Retrieved 100 of 98,524 protein–RNA pairs in 96.4 ms