Protein–RNA interactions for Protein: Q3V6T2

CCDC88A, Girdin, humanhuman

Predictions only

Length 1,871 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88AQ3V6T2 TMTC1-203ENST00000539277 2758 ntAPPRIS P2 TSL 1 (best) BASIC21.67■■□□□ 1.06
CCDC88AQ3V6T2 PPP1R7-202ENST00000272983 1954 ntTSL 2 BASIC21.67■■□□□ 1.06
CCDC88AQ3V6T2 MORN1-203ENST00000378531 1798 ntAPPRIS P3 TSL 2 BASIC21.67■■□□□ 1.06
CCDC88AQ3V6T2 WWOX-203ENST00000406884 1701 ntTSL 1 (best) BASIC21.67■■□□□ 1.06
CCDC88AQ3V6T2 ATP23-201ENST00000300145 1245 ntAPPRIS P1 TSL 1 (best) BASIC21.67■■□□□ 1.06
CCDC88AQ3V6T2 CD99-202ENST00000381180 530 ntTSL 2 BASIC21.67■■□□□ 1.06
CCDC88AQ3V6T2 GUK1-210ENST00000391865 990 ntAPPRIS ALT1 TSL 1 (best) BASIC21.67■■□□□ 1.06
CCDC88AQ3V6T2 SGO2-202ENST00000409203 1041 ntAPPRIS ALT2 TSL 1 (best) BASIC21.67■■□□□ 1.06
CCDC88AQ3V6T2 AC122714.2-201ENST00000502787 707 ntBASIC21.67■■□□□ 1.06
CCDC88AQ3V6T2 TRMT112-202ENST00000535126 704 ntTSL 2 BASIC21.67■■□□□ 1.06
CCDC88AQ3V6T2 AC007192.2-201ENST00000600364 463 ntTSL 5 BASIC21.67■■□□□ 1.06
CCDC88AQ3V6T2 GRIFIN-202ENST00000614228 461 ntAPPRIS P1 TSL 5 BASIC21.67■■□□□ 1.06
CCDC88AQ3V6T2 KSR1-205ENST00000509603 2731 ntAPPRIS ALT2 TSL 5 BASIC21.67■■□□□ 1.06
CCDC88AQ3V6T2 PC-214ENST00000628663 1470 ntTSL 5 BASIC21.67■■□□□ 1.06
CCDC88AQ3V6T2 GGN-201ENST00000334928 2239 ntAPPRIS P1 TSL 1 (best) BASIC21.67■■□□□ 1.06
CCDC88AQ3V6T2 TIMM50-220ENST00000607714 1338 ntAPPRIS ALT2 TSL 1 (best) BASIC21.67■■□□□ 1.06
CCDC88AQ3V6T2 CCDC7-203ENST00000362006 2133 ntAPPRIS P2 TSL 1 (best) BASIC21.66■■□□□ 1.06
CCDC88AQ3V6T2 SLBP-205ENST00000488267 987 ntTSL 2 BASIC21.66■■□□□ 1.06
CCDC88AQ3V6T2 AC067930.3-201ENST00000524808 701 ntTSL 3 BASIC21.66■■□□□ 1.06
CCDC88AQ3V6T2 AC243562.3-201ENST00000559866 1212 ntTSL 1 (best) BASIC21.66■■□□□ 1.06
CCDC88AQ3V6T2 AC092902.6-201ENST00000641783 218 ntBASIC21.66■■□□□ 1.06
CCDC88AQ3V6T2 TNXA-203ENST00000507684 2038 ntBASIC21.66■■□□□ 1.06
CCDC88AQ3V6T2 LMTK3-201ENST00000270238 4972 ntAPPRIS P2 TSL 1 (best) BASIC21.66■■□□□ 1.06
CCDC88AQ3V6T2 ATP1B1-201ENST00000367815 1883 ntAPPRIS P1 TSL 1 (best) BASIC21.66■■□□□ 1.06
CCDC88AQ3V6T2 INSM2-201ENST00000307169 3013 ntAPPRIS P1 BASIC21.66■■□□□ 1.06
CCDC88AQ3V6T2 FAM50B-201ENST00000380272 1628 ntAPPRIS P1 TSL 1 (best) BASIC21.66■■□□□ 1.06
CCDC88AQ3V6T2 NABP2-201ENST00000267023 1417 ntAPPRIS P1 TSL 1 (best) BASIC21.66■■□□□ 1.06
CCDC88AQ3V6T2 ACSM2A-201ENST00000219054 1988 ntAPPRIS P1 TSL 1 (best) BASIC21.66■■□□□ 1.06
CCDC88AQ3V6T2 ABCB9-202ENST00000344275 2394 ntTSL 1 (best) BASIC21.66■■□□□ 1.06
CCDC88AQ3V6T2 METTL26-201ENST00000301686 794 ntAPPRIS P1 TSL 2 BASIC21.66■■□□□ 1.06
CCDC88AQ3V6T2 METTL26-205ENST00000397666 726 ntTSL 2 BASIC21.66■■□□□ 1.06
CCDC88AQ3V6T2 AC104135.1-201ENST00000418001 763 ntTSL 5 BASIC21.66■■□□□ 1.06
CCDC88AQ3V6T2 FAM58CP-201ENST00000435741 640 ntBASIC21.66■■□□□ 1.06
CCDC88AQ3V6T2 LINC01640-201ENST00000452505 550 ntTSL 4 BASIC21.66■■□□□ 1.06
CCDC88AQ3V6T2 RPS15P9-201ENST00000494093 319 ntBASIC21.66■■□□□ 1.06
CCDC88AQ3V6T2 SEC24B-AS1-201ENST00000499359 957 ntTSL 1 (best) BASIC21.66■■□□□ 1.06
CCDC88AQ3V6T2 AC122138.1-201ENST00000508799 646 ntTSL 2 BASIC21.66■■□□□ 1.06
CCDC88AQ3V6T2 SEC24B-AS1-204ENST00000510971 554 ntTSL 4 BASIC21.66■■□□□ 1.06
CCDC88AQ3V6T2 AZIN1-AS1-212ENST00000520538 476 ntTSL 3 BASIC21.66■■□□□ 1.06
CCDC88AQ3V6T2 LINC01819-201ENST00000422351 2156 ntTSL 5 BASIC21.66■■□□□ 1.06
CCDC88AQ3V6T2 RGS20-203ENST00000344277 1667 ntTSL 1 (best) BASIC21.66■■□□□ 1.06
CCDC88AQ3V6T2 SEL1L-204ENST00000555824 1631 ntTSL 1 (best) BASIC21.66■■□□□ 1.06
CCDC88AQ3V6T2 SIL1-202ENST00000394817 1923 ntAPPRIS P1 TSL 1 (best) BASIC21.65■■□□□ 1.06
CCDC88AQ3V6T2 SP100-208ENST00000427101 1922 ntTSL 2 BASIC21.65■■□□□ 1.06
CCDC88AQ3V6T2 WIZP1-201ENST00000531444 2299 ntBASIC21.65■■□□□ 1.06
CCDC88AQ3V6T2 ACVR1B-203ENST00000426655 1782 ntTSL 2 BASIC21.65■■□□□ 1.06
CCDC88AQ3V6T2 C8orf76-201ENST00000276704 1341 ntAPPRIS P1 TSL 1 (best) BASIC21.65■■□□□ 1.06
CCDC88AQ3V6T2 CEACAM16-202ENST00000587331 1692 ntAPPRIS P1 TSL 1 (best) BASIC21.65■■□□□ 1.06
CCDC88AQ3V6T2 POLR3GL-202ENST00000369314 1165 ntAPPRIS P1 TSL 1 (best) BASIC21.65■■□□□ 1.06
CCDC88AQ3V6T2 RHOQP3-201ENST00000437982 621 ntBASIC21.65■■□□□ 1.06
CCDC88AQ3V6T2 C3orf14-202ENST00000462069 631 ntAPPRIS P1 TSL 1 (best) BASIC21.65■■□□□ 1.06
CCDC88AQ3V6T2 MOK-203ENST00000517966 1230 ntTSL 1 (best) BASIC21.65■■□□□ 1.06
CCDC88AQ3V6T2 PPP1R14A-203ENST00000587515 607 ntTSL 2 BASIC21.65■■□□□ 1.06
CCDC88AQ3V6T2 CITED2-204ENST00000618718 901 ntTSL 2 BASIC21.65■■□□□ 1.06
CCDC88AQ3V6T2 EGR3-204ENST00000522910 1553 ntAPPRIS ALT1 TSL 2 BASIC21.65■■□□□ 1.06
CCDC88AQ3V6T2 SKI-201ENST00000378536 5613 ntAPPRIS P1 TSL 1 (best) BASIC21.65■■□□□ 1.06
CCDC88AQ3V6T2 AP5S1-201ENST00000246041 1960 ntAPPRIS P1 TSL 4 BASIC21.65■■□□□ 1.06
CCDC88AQ3V6T2 SOCS2-201ENST00000340600 2761 ntAPPRIS P1 TSL 1 (best) BASIC21.65■■□□□ 1.06
CCDC88AQ3V6T2 SLC38A10-201ENST00000288439 2708 ntAPPRIS P3 TSL 1 (best) BASIC21.64■■□□□ 1.06
CCDC88AQ3V6T2 AL391650.1-205ENST00000433939 579 ntAPPRIS P1 TSL 3 BASIC21.64■■□□□ 1.06
CCDC88AQ3V6T2 ATP1B1-202ENST00000367816 2608 ntAPPRIS P1 TSL 5 BASIC21.64■■□□□ 1.06
CCDC88AQ3V6T2 PHGDH-209ENST00000641074 1780 ntBASIC21.64■■□□□ 1.06
CCDC88AQ3V6T2 HCLS1-201ENST00000314583 2000 ntAPPRIS P1 TSL 1 (best) BASIC21.64■■□□□ 1.06
CCDC88AQ3V6T2 KIF1BP-201ENST00000361983 2544 ntAPPRIS P1 TSL 1 (best) BASIC21.64■■□□□ 1.06
CCDC88AQ3V6T2 ZIC3-202ENST00000370606 1968 ntTSL 5 BASIC21.64■■□□□ 1.06
CCDC88AQ3V6T2 EWSR1-208ENST00000414183 2189 ntAPPRIS P4 TSL 2 BASIC21.64■■□□□ 1.05
CCDC88AQ3V6T2 RAX-202ENST00000334889 3197 ntAPPRIS P1 TSL 1 (best) BASIC21.64■■□□□ 1.05
CCDC88AQ3V6T2 EGFL7-203ENST00000371699 2125 ntAPPRIS P1 TSL 2 BASIC21.64■■□□□ 1.05
CCDC88AQ3V6T2 MZF1-203ENST00000594234 2385 ntTSL 1 (best) BASIC21.64■■□□□ 1.05
CCDC88AQ3V6T2 BX323043.1-201ENST00000641006 1765 ntBASIC21.64■■□□□ 1.05
CCDC88AQ3V6T2 CLIC1-208ENST00000375784 1254 ntAPPRIS P1 TSL 1 (best) BASIC21.64■■□□□ 1.05
CCDC88AQ3V6T2 AC234772.2-201ENST00000456532 375 ntTSL 3 BASIC21.64■■□□□ 1.05
CCDC88AQ3V6T2 C9orf147-204ENST00000463223 863 ntTSL 3 BASIC21.64■■□□□ 1.05
CCDC88AQ3V6T2 AC022145.2-201ENST00000598203 171 ntBASIC21.64■■□□□ 1.05
CCDC88AQ3V6T2 AC004790.2-201ENST00000623588 572 ntBASIC21.64■■□□□ 1.05
CCDC88AQ3V6T2 WEE1-202ENST00000450114 2799 ntAPPRIS P1 TSL 1 (best) BASIC21.64■■□□□ 1.05
CCDC88AQ3V6T2 ASIC3-202ENST00000349064 1895 ntAPPRIS P1 TSL 1 (best) BASIC21.64■■□□□ 1.05
CCDC88AQ3V6T2 LINC01105-206ENST00000456327 1434 ntTSL 5 BASIC21.64■■□□□ 1.05
CCDC88AQ3V6T2 ZFAND6-201ENST00000261749 1814 ntAPPRIS P1 TSL 1 (best) BASIC21.63■■□□□ 1.05
CCDC88AQ3V6T2 ATRIP-202ENST00000346691 2509 ntTSL 1 (best) BASIC21.63■■□□□ 1.05
CCDC88AQ3V6T2 KRT24-201ENST00000264651 1881 ntAPPRIS P1 TSL 1 (best) BASIC21.63■■□□□ 1.05
CCDC88AQ3V6T2 NQO2-203ENST00000380441 1021 ntTSL 5 BASIC21.63■■□□□ 1.05
CCDC88AQ3V6T2 SNHG17-206ENST00000436764 973 ntTSL 5 BASIC21.63■■□□□ 1.05
CCDC88AQ3V6T2 FAM153C-206ENST00000507848 1071 ntAPPRIS ALT2 TSL 2 BASIC21.63■■□□□ 1.05
CCDC88AQ3V6T2 LMO7-AS1-202ENST00000568735 467 ntTSL 3 BASIC21.63■■□□□ 1.05
CCDC88AQ3V6T2 INO80C-206ENST00000586489 594 ntTSL 3 BASIC21.63■■□□□ 1.05
CCDC88AQ3V6T2 NFATC4-228ENST00000556759 2025 ntTSL 1 (best) BASIC21.63■■□□□ 1.05
CCDC88AQ3V6T2 ARMC6-202ENST00000392335 2383 ntAPPRIS P1 TSL 1 (best) BASIC21.63■■□□□ 1.05
CCDC88AQ3V6T2 MAGEA3-203ENST00000598245 1762 ntAPPRIS P1 TSL 2 BASIC21.63■■□□□ 1.05
CCDC88AQ3V6T2 MAGEA6-204ENST00000616035 1762 ntAPPRIS P1 TSL 5 BASIC21.63■■□□□ 1.05
CCDC88AQ3V6T2 DHRS2-201ENST00000250383 1705 ntAPPRIS P3 TSL 1 (best) BASIC21.63■■□□□ 1.05
CCDC88AQ3V6T2 RGMB-207ENST00000513185 2052 ntAPPRIS ALT2 TSL 2 BASIC21.63■■□□□ 1.05
CCDC88AQ3V6T2 ALG3-201ENST00000397676 1528 ntAPPRIS P1 TSL 1 (best) BASIC21.63■■□□□ 1.05
CCDC88AQ3V6T2 MED9-201ENST00000268711 2228 ntAPPRIS P1 TSL 1 (best) BASIC21.63■■□□□ 1.05
CCDC88AQ3V6T2 LINC02415-201ENST00000508505 1315 ntTSL 1 (best) BASIC21.63■■□□□ 1.05
CCDC88AQ3V6T2 PCID2-203ENST00000375457 2372 ntTSL 1 (best) BASIC21.63■■□□□ 1.05
CCDC88AQ3V6T2 CRTC1-203ENST00000594658 2384 ntTSL 1 (best) BASIC21.63■■□□□ 1.05
CCDC88AQ3V6T2 HS3ST4-201ENST00000331351 3203 ntAPPRIS P1 TSL 1 (best) BASIC21.63■■□□□ 1.05
CCDC88AQ3V6T2 ISLR2-204ENST00000453268 2812 ntAPPRIS P1 TSL 1 (best) BASIC21.62■■□□□ 1.05
CCDC88AQ3V6T2 CCDC88C-203ENST00000389856 1641 ntTSL 1 (best) BASIC21.62■■□□□ 1.05
Retrieved 100 of 98,524 protein–RNA pairs in 42.2 ms