Protein–RNA interactions for Protein: P50431

Shmt1, Serine hydroxymethyltransferase, cytosolic, mousemouse

Predictions only

Length 478 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Shmt1P50431 Chd1l-201ENSMUST00000029730 3008 ntAPPRIS P1 TSL 1 (best) BASIC15.76■□□□□ 0.11
Shmt1P50431 Cbfb-203ENSMUST00000109394 2487 ntTSL 1 (best) BASIC15.76■□□□□ 0.11
Shmt1P50431 Mdh2-201ENSMUST00000019323 1456 ntAPPRIS P1 TSL 1 (best) BASIC15.76■□□□□ 0.11
Shmt1P50431 Agpat1-202ENSMUST00000114140 1941 ntAPPRIS P1 TSL 1 (best) BASIC15.76■□□□□ 0.11
Shmt1P50431 Agpat1-208ENSMUST00000174595 1911 ntAPPRIS P1 TSL 5 BASIC15.76■□□□□ 0.11
Shmt1P50431 Islr2-203ENSMUST00000163897 4303 ntAPPRIS P3 TSL 2 BASIC15.76■□□□□ 0.11
Shmt1P50431 Cilp2-201ENSMUST00000057831 4314 ntAPPRIS P1 TSL 5 BASIC15.76■□□□□ 0.11
Shmt1P50431 Nkd2-202ENSMUST00000118096 2801 ntAPPRIS ALT2 TSL 1 (best) BASIC15.76■□□□□ 0.11
Shmt1P50431 Trim65-201ENSMUST00000067632 3048 ntAPPRIS P1 TSL 1 (best) BASIC15.76■□□□□ 0.11
Shmt1P50431 Tmc8-203ENSMUST00000117781 2344 ntAPPRIS ALT2 TSL 1 (best) BASIC15.76■□□□□ 0.11
Shmt1P50431 Ercc1-201ENSMUST00000003645 1375 ntAPPRIS P1 TSL 1 (best) BASIC15.75■□□□□ 0.11
Shmt1P50431 Pltp-201ENSMUST00000059954 1809 ntAPPRIS P1 TSL 1 (best) BASIC15.75■□□□□ 0.11
Shmt1P50431 St6galnac2-201ENSMUST00000079545 3643 ntAPPRIS P1 TSL 1 (best) BASIC15.75■□□□□ 0.11
Shmt1P50431 Ccdc88b-201ENSMUST00000113440 4959 ntAPPRIS P1 TSL 1 (best) BASIC15.75■□□□□ 0.11
Shmt1P50431 Lats1-202ENSMUST00000165952 7209 ntAPPRIS P1 TSL 1 (best) BASIC15.75■□□□□ 0.11
Shmt1P50431 Mmp28-203ENSMUST00000108137 2451 ntAPPRIS ALT2 TSL 1 (best) BASIC15.75■□□□□ 0.11
Shmt1P50431 Chrna3-202ENSMUST00000214204 2414 ntTSL 1 (best) BASIC15.75■□□□□ 0.11
Shmt1P50431 Loxl4-203ENSMUST00000164786 2617 ntAPPRIS ALT2 TSL 1 (best) BASIC15.75■□□□□ 0.11
Shmt1P50431 Zfp446-204ENSMUST00000108537 2178 ntAPPRIS ALT2 TSL 1 (best) BASIC15.75■□□□□ 0.11
Shmt1P50431 Tmem241-202ENSMUST00000055447 2597 ntAPPRIS ALT2 TSL 1 (best) BASIC15.75■□□□□ 0.11
Shmt1P50431 Atf7ip2-202ENSMUST00000100191 889 ntTSL 1 (best) BASIC15.75■□□□□ 0.11
Shmt1P50431 Tpm3-203ENSMUST00000119158 1090 ntTSL 3 BASIC15.75■□□□□ 0.11
Shmt1P50431 Gm18889-201ENSMUST00000174284 929 ntBASIC15.75■□□□□ 0.11
Shmt1P50431 Gm10576-201ENSMUST00000191927 825 ntBASIC15.75■□□□□ 0.11
Shmt1P50431 Cdipt-205ENSMUST00000206450 951 ntTSL 5 BASIC15.75■□□□□ 0.11
Shmt1P50431 H2-K1-202ENSMUST00000087189 579 ntTSL 1 (best) BASIC15.75■□□□□ 0.11
Shmt1P50431 Olfr615-201ENSMUST00000098198 942 ntAPPRIS P1 BASIC15.75■□□□□ 0.11
Shmt1P50431 Cspp1-205ENSMUST00000122156 2535 ntTSL 1 (best) BASIC15.75■□□□□ 0.11
Shmt1P50431 Efs-202ENSMUST00000227037 2540 ntBASIC15.75■□□□□ 0.11
Shmt1P50431 Trappc5-201ENSMUST00000044857 2546 ntAPPRIS P1 TSL 1 (best) BASIC15.75■□□□□ 0.11
Shmt1P50431 Ubr2-201ENSMUST00000113335 5691 ntAPPRIS ALT2 TSL 1 (best) BASIC15.75■□□□□ 0.11
Shmt1P50431 Guca1b-201ENSMUST00000024774 1668 ntAPPRIS P1 TSL 1 (best) BASIC15.75■□□□□ 0.11
Shmt1P50431 Ntng2-203ENSMUST00000091153 1695 ntAPPRIS ALT2 TSL 1 (best) BASIC15.75■□□□□ 0.11
Shmt1P50431 Tulp2-205ENSMUST00000107762 1883 ntAPPRIS ALT2 TSL 1 (best) BASIC15.75■□□□□ 0.11
Shmt1P50431 Zfp316-201ENSMUST00000051665 3054 ntAPPRIS P1 TSL 1 (best) BASIC15.75■□□□□ 0.11
Shmt1P50431 Aen-201ENSMUST00000107421 2007 ntAPPRIS ALT2 TSL 1 (best) BASIC15.75■□□□□ 0.11
Shmt1P50431 G630022F23Rik-201ENSMUST00000202923 3627 ntBASIC15.75■□□□□ 0.11
Shmt1P50431 Zdhhc18-201ENSMUST00000084238 4580 ntAPPRIS P1 TSL 2 BASIC15.75■□□□□ 0.11
Shmt1P50431 Axin1-201ENSMUST00000074370 3777 ntAPPRIS P3 TSL 1 (best) BASIC15.75■□□□□ 0.11
Shmt1P50431 Kcnip4-201ENSMUST00000087395 2366 ntTSL 5 BASIC15.75■□□□□ 0.11
Shmt1P50431 Nudt18-203ENSMUST00000228768 1578 ntBASIC15.75■□□□□ 0.11
Shmt1P50431 Ttll3-202ENSMUST00000038889 3114 ntAPPRIS ALT2 TSL 5 BASIC15.74■□□□□ 0.11
Shmt1P50431 Coasy-201ENSMUST00000001806 2138 ntAPPRIS P1 TSL 1 (best) BASIC15.74■□□□□ 0.11
Shmt1P50431 Fbxl16-201ENSMUST00000045692 3478 ntAPPRIS P1 TSL 5 BASIC15.74■□□□□ 0.11
Shmt1P50431 Ppp3cb-201ENSMUST00000022355 3074 ntAPPRIS ALT1 TSL 5 BASIC15.74■□□□□ 0.11
Shmt1P50431 Zfp707-202ENSMUST00000109967 1703 ntAPPRIS P3 TSL 1 (best) BASIC15.74■□□□□ 0.11
Shmt1P50431 Pde4d-204ENSMUST00000117879 1724 ntTSL 1 (best) BASIC15.74■□□□□ 0.11
Shmt1P50431 Tmem255a-203ENSMUST00000089056 1745 ntTSL 1 (best) BASIC15.74■□□□□ 0.11
Shmt1P50431 Slc4a5-203ENSMUST00000113900 3630 ntAPPRIS ALT2 TSL 5 BASIC15.74■□□□□ 0.11
Shmt1P50431 Pkn2-201ENSMUST00000043812 6207 ntAPPRIS P1 TSL 1 (best) BASIC15.74■□□□□ 0.11
Shmt1P50431 Rnf139-201ENSMUST00000036904 4348 ntAPPRIS P1 TSL 1 (best) BASIC15.74■□□□□ 0.11
Shmt1P50431 Teddm2-202ENSMUST00000123490 1851 ntAPPRIS ALT2 TSL 1 (best) BASIC15.74■□□□□ 0.11
Shmt1P50431 Wt1-202ENSMUST00000111099 2441 ntTSL 5 BASIC15.74■□□□□ 0.11
Shmt1P50431 Tbc1d8-201ENSMUST00000054462 4451 ntAPPRIS P2 TSL 1 (best) BASIC15.74■□□□□ 0.11
Shmt1P50431 Clcn2-201ENSMUST00000007207 3128 ntAPPRIS P2 TSL 1 (best) BASIC15.74■□□□□ 0.11
Shmt1P50431 Sesn3-201ENSMUST00000034507 1827 ntTSL 5 BASIC15.74■□□□□ 0.11
Shmt1P50431 Rprl2-201ENSMUST00000157150 290 ntBASIC15.74■□□□□ 0.11
Shmt1P50431 Gm18057-201ENSMUST00000208220 503 ntBASIC15.74■□□□□ 0.11
Shmt1P50431 AC166341.4-201ENSMUST00000220625 123 ntBASIC15.74■□□□□ 0.11
Shmt1P50431 Krtap9-3-201ENSMUST00000062683 759 ntAPPRIS P1 BASIC15.74■□□□□ 0.11
Shmt1P50431 Ydjc-203ENSMUST00000115706 3097 ntTSL 1 (best) BASIC15.74■□□□□ 0.11
Shmt1P50431 Tmem87b-201ENSMUST00000110325 4807 ntAPPRIS P1 TSL 1 (best) BASIC15.74■□□□□ 0.11
Shmt1P50431 Pcdha9-201ENSMUST00000115659 5341 ntAPPRIS P1 TSL 1 (best) BASIC15.74■□□□□ 0.11
Shmt1P50431 Rbfox3-203ENSMUST00000103023 2809 ntAPPRIS ALT2 TSL 1 (best) BASIC15.74■□□□□ 0.11
Shmt1P50431 Zfp36l2-201ENSMUST00000060366 3530 ntAPPRIS P1 TSL 1 (best) BASIC15.74■□□□□ 0.11
Shmt1P50431 Suco-201ENSMUST00000048377 6327 ntAPPRIS P2 TSL 1 (best) BASIC15.74■□□□□ 0.11
Shmt1P50431 Eftud2-202ENSMUST00000107060 3339 ntTSL 1 (best) BASIC15.74■□□□□ 0.11
Shmt1P50431 Oser1-202ENSMUST00000104954 1702 ntAPPRIS P1 TSL 1 (best) BASIC15.74■□□□□ 0.11
Shmt1P50431 Ttll5-201ENSMUST00000040179 5081 ntAPPRIS P3 TSL 1 (best) BASIC15.73■□□□□ 0.11
Shmt1P50431 Mn1-201ENSMUST00000094463 6860 ntAPPRIS P1 TSL 2 BASIC15.73■□□□□ 0.11
Shmt1P50431 Nkx3-1-201ENSMUST00000022646 3195 ntAPPRIS P1 TSL 1 (best) BASIC15.73■□□□□ 0.11
Shmt1P50431 Patz1-202ENSMUST00000093402 3173 ntTSL 2 BASIC15.73■□□□□ 0.11
Shmt1P50431 Gm6018-201ENSMUST00000216090 1306 ntBASIC15.73■□□□□ 0.11
Shmt1P50431 Tmub1-201ENSMUST00000030799 1333 ntAPPRIS P1 TSL 1 (best) BASIC15.73■□□□□ 0.11
Shmt1P50431 Gm26666-201ENSMUST00000180763 2461 ntTSL 1 (best) BASIC15.73■□□□□ 0.11
Shmt1P50431 N6amt1-202ENSMUST00000118115 1951 ntTSL 1 (best) BASIC15.73■□□□□ 0.11
Shmt1P50431 Csnk2a2-201ENSMUST00000056919 3773 ntAPPRIS P1 TSL 1 (best) BASIC15.73■□□□□ 0.11
Shmt1P50431 Lpar5-203ENSMUST00000171989 1458 ntAPPRIS P1 TSL 2 BASIC15.73■□□□□ 0.11
Shmt1P50431 Papd5-202ENSMUST00000118952 4597 ntAPPRIS P1 TSL 1 (best) BASIC15.73■□□□□ 0.11
Shmt1P50431 Eif4g1-202ENSMUST00000073840 5394 ntAPPRIS ALT2 TSL 5 BASIC15.73■□□□□ 0.11
Shmt1P50431 Igf2-203ENSMUST00000105935 650 ntAPPRIS P1 TSL 3 BASIC15.73■□□□□ 0.11
Shmt1P50431 Meig1-204ENSMUST00000115083 567 ntAPPRIS P1 TSL 2 BASIC15.73■□□□□ 0.11
Shmt1P50431 Gm11788-201ENSMUST00000142520 562 ntTSL 3 BASIC15.73■□□□□ 0.11
Shmt1P50431 Trip6-203ENSMUST00000199121 366 ntTSL 3 BASIC15.73■□□□□ 0.11
Shmt1P50431 Klrg2-202ENSMUST00000201345 1225 ntAPPRIS ALT2 TSL 5 BASIC15.73■□□□□ 0.11
Shmt1P50431 Gm45091-201ENSMUST00000205799 504 ntTSL 3 BASIC15.73■□□□□ 0.11
Shmt1P50431 Trem2-201ENSMUST00000024791 1088 ntAPPRIS P3 TSL 1 (best) BASIC15.73■□□□□ 0.11
Shmt1P50431 Rab33a-201ENSMUST00000033430 1158 ntAPPRIS P1 TSL 1 (best) BASIC15.73■□□□□ 0.11
Shmt1P50431 Vps25-202ENSMUST00000042477 1106 ntAPPRIS P1 TSL 1 (best) BASIC15.73■□□□□ 0.11
Shmt1P50431 1700086L19Rik-201ENSMUST00000095617 706 ntBASIC15.73■□□□□ 0.11
Shmt1P50431 Erich4-201ENSMUST00000098663 911 ntAPPRIS P1 TSL 1 (best) BASIC15.73■□□□□ 0.11
Shmt1P50431 Fuca1-201ENSMUST00000030434 2525 ntAPPRIS P1 TSL 1 (best) BASIC15.73■□□□□ 0.11
Shmt1P50431 Hmga1-201ENSMUST00000114888 1593 ntAPPRIS ALT1 TSL 1 (best) BASIC15.73■□□□□ 0.11
Shmt1P50431 Ccnj-203ENSMUST00000120057 3783 ntTSL 5 BASIC15.73■□□□□ 0.11
Shmt1P50431 Gm16425-201ENSMUST00000118143 3130 ntBASIC15.73■□□□□ 0.11
Shmt1P50431 Map6d1-201ENSMUST00000040880 3273 ntAPPRIS P1 TSL 1 (best) BASIC15.73■□□□□ 0.11
Shmt1P50431 AC154231.1-201ENSMUST00000220564 2175 ntBASIC15.73■□□□□ 0.11
Shmt1P50431 Xrcc1-201ENSMUST00000063249 2155 ntAPPRIS P1 TSL 1 (best) BASIC15.73■□□□□ 0.11
Shmt1P50431 Adnp-201ENSMUST00000057793 4917 ntAPPRIS P1 TSL 5 BASIC15.73■□□□□ 0.11
Shmt1P50431 Egfl7-212ENSMUST00000166920 1391 ntAPPRIS P4 TSL 1 (best) BASIC15.73■□□□□ 0.11
Retrieved 100 of 76,532 protein–RNA pairs in 30.6 ms