Protein–RNA interactions for Protein: P25940

COL5A3, Collagen alpha-3(V) chain, humanhuman

Predicted RBP Predictions only

Length 1,745 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL5A3P25940 TIGD6-202ENST00000515406 2429 ntAPPRIS P1 TSL 1 (best) BASIC22.31■■□□□ 1.16
COL5A3P25940 METRNL-203ENST00000571814 1900 ntTSL 1 (best) BASIC22.31■■□□□ 1.16
COL5A3P25940 ALDOC-201ENST00000226253 1982 ntAPPRIS P1 TSL 1 (best) BASIC22.31■■□□□ 1.16
COL5A3P25940 ROPN1L-201ENST00000274134 1066 ntAPPRIS P1 TSL 1 (best) BASIC22.31■■□□□ 1.16
COL5A3P25940 CTRB2-201ENST00000303037 901 ntAPPRIS P1 TSL 1 (best) BASIC22.31■■□□□ 1.16
COL5A3P25940 C6orf99-202ENST00000367073 769 ntTSL 5 BASIC22.31■■□□□ 1.16
COL5A3P25940 PTCHD3P3-201ENST00000403073 906 ntBASIC22.31■■□□□ 1.16
COL5A3P25940 NKIRAS1-204ENST00000416026 795 ntAPPRIS P2 TSL 3 BASIC22.31■■□□□ 1.16
COL5A3P25940 ACTG1P14-201ENST00000446382 1122 ntBASIC22.31■■□□□ 1.16
COL5A3P25940 IDH3B-206ENST00000474315 1279 ntAPPRIS ALT1 TSL 1 (best) BASIC22.31■■□□□ 1.16
COL5A3P25940 CCND1-203ENST00000536559 553 ntTSL 3 BASIC22.31■■□□□ 1.16
COL5A3P25940 PGLYRP1-201ENST00000008938 720 ntAPPRIS P1 TSL 1 (best) BASIC22.31■■□□□ 1.16
COL5A3P25940 THNSL2-203ENST00000377254 1560 ntTSL 2 BASIC22.31■■□□□ 1.16
COL5A3P25940 NUDT9-201ENST00000302174 1701 ntAPPRIS P1 TSL 1 (best) BASIC22.31■■□□□ 1.16
COL5A3P25940 NFKBID-210ENST00000606253 1736 ntAPPRIS ALT2 TSL 1 (best) BASIC22.31■■□□□ 1.16
COL5A3P25940 KRT24-201ENST00000264651 1881 ntAPPRIS P1 TSL 1 (best) BASIC22.31■■□□□ 1.16
COL5A3P25940 C16orf59-204ENST00000563531 1864 ntAPPRIS ALT2 TSL 5 BASIC22.31■■□□□ 1.16
COL5A3P25940 PSMD3-201ENST00000264639 2158 ntAPPRIS P1 TSL 1 (best) BASIC22.31■■□□□ 1.16
COL5A3P25940 SERHL2-203ENST00000340239 1315 ntTSL 5 BASIC22.3■■□□□ 1.16
COL5A3P25940 HTR1A-201ENST00000323865 1778 ntAPPRIS P1 BASIC22.3■■□□□ 1.16
COL5A3P25940 DHRSX-201ENST00000334651 2571 ntAPPRIS P1 TSL 1 (best) BASIC22.3■■□□□ 1.16
COL5A3P25940 FAM53C-202ENST00000434981 1686 ntAPPRIS P1 TSL 1 (best) BASIC22.3■■□□□ 1.16
COL5A3P25940 PIGF-201ENST00000281382 1372 ntAPPRIS P1 TSL 1 (best) BASIC22.3■■□□□ 1.16
COL5A3P25940 HAUS8-201ENST00000253669 1568 ntAPPRIS P3 TSL 1 (best) BASIC22.3■■□□□ 1.16
COL5A3P25940 LHX6-205ENST00000464484 666 ntTSL 2 BASIC22.3■■□□□ 1.16
COL5A3P25940 FAM153C-206ENST00000507848 1071 ntAPPRIS ALT2 TSL 2 BASIC22.3■■□□□ 1.16
COL5A3P25940 AC124067.2-201ENST00000521989 510 ntTSL 2 BASIC22.3■■□□□ 1.16
COL5A3P25940 AC099522.2-201ENST00000607001 744 ntBASIC22.3■■□□□ 1.16
COL5A3P25940 FAM131A-202ENST00000340957 2421 ntTSL 1 (best) BASIC22.3■■□□□ 1.16
COL5A3P25940 ADRA1A-201ENST00000276393 2281 ntAPPRIS P1 TSL 1 (best) BASIC22.3■■□□□ 1.16
COL5A3P25940 SLC22A11-202ENST00000377581 1975 ntTSL 5 BASIC22.3■■□□□ 1.16
COL5A3P25940 PGAM5-203ENST00000498926 2834 ntAPPRIS P1 TSL 2 BASIC22.29■■□□□ 1.16
COL5A3P25940 APBB1-215ENST00000608394 2128 ntTSL 5 BASIC22.29■■□□□ 1.16
COL5A3P25940 APBB1-222ENST00000610474 2147 ntTSL 5 BASIC22.29■■□□□ 1.16
COL5A3P25940 TTC29-201ENST00000325106 1785 ntAPPRIS P3 TSL 1 (best) BASIC22.29■■□□□ 1.16
COL5A3P25940 TTC29-205ENST00000504425 1777 ntAPPRIS ALT2 TSL 5 BASIC22.29■■□□□ 1.16
COL5A3P25940 AC097637.2-201ENST00000624096 1997 ntBASIC22.29■■□□□ 1.16
COL5A3P25940 AC092919.2-201ENST00000623631 1645 ntBASIC22.29■■□□□ 1.16
COL5A3P25940 AMACR-204ENST00000382085 1195 ntTSL 1 (best) BASIC22.29■■□□□ 1.16
COL5A3P25940 BCRP1-201ENST00000444246 691 ntBASIC22.29■■□□□ 1.16
COL5A3P25940 AC087163.2-201ENST00000457299 853 ntBASIC22.29■■□□□ 1.16
COL5A3P25940 FAM118B-206ENST00000529731 1028 ntTSL 5 BASIC22.29■■□□□ 1.16
COL5A3P25940 RNF32-201ENST00000311822 1842 ntTSL 1 (best) BASIC22.29■■□□□ 1.16
COL5A3P25940 AC129492.1-201ENST00000399413 1804 ntTSL 1 (best) BASIC22.29■■□□□ 1.16
COL5A3P25940 SQOR-201ENST00000260324 2003 ntAPPRIS P1 TSL 1 (best) BASIC22.29■■□□□ 1.16
COL5A3P25940 HCCS-201ENST00000321143 2277 ntAPPRIS P1 TSL 2 BASIC22.29■■□□□ 1.16
COL5A3P25940 ALDH5A1-201ENST00000348925 2266 ntAPPRIS P4 TSL 1 (best) BASIC22.29■■□□□ 1.16
COL5A3P25940 AC006116.8-202ENST00000587620 1550 ntBASIC22.29■■□□□ 1.16
COL5A3P25940 ACSM2A-201ENST00000219054 1988 ntAPPRIS P1 TSL 1 (best) BASIC22.29■■□□□ 1.16
COL5A3P25940 DUSP7-202ENST00000495880 3340 ntAPPRIS P1 TSL 1 (best) BASIC22.29■■□□□ 1.16
COL5A3P25940 MEN1-208ENST00000394374 3155 ntAPPRIS P3 TSL 5 BASIC22.29■■□□□ 1.16
COL5A3P25940 DDT-204ENST00000404092 805 ntTSL 3 BASIC22.28■■□□□ 1.16
COL5A3P25940 CDK18-217ENST00000506784 2143 ntTSL 1 (best) BASIC22.28■■□□□ 1.16
COL5A3P25940 AC002398.2-201ENST00000587767 660 ntTSL 5 BASIC22.28■■□□□ 1.16
COL5A3P25940 SHOX-204ENST00000554971 1902 ntAPPRIS P1 TSL 1 (best) BASIC22.28■■□□□ 1.16
COL5A3P25940 SNX1-208ENST00000559844 1971 ntAPPRIS P1 TSL 1 (best) BASIC22.28■■□□□ 1.16
COL5A3P25940 AC117500.2-201ENST00000508145 1561 ntTSL 1 (best) BASIC22.28■■□□□ 1.16
COL5A3P25940 POR-209ENST00000439269 1858 ntTSL 2 BASIC22.28■■□□□ 1.16
COL5A3P25940 RIN1-205ENST00000530056 2122 ntTSL 2 BASIC22.28■■□□□ 1.16
COL5A3P25940 MUS81-201ENST00000308110 2392 ntAPPRIS P1 TSL 1 (best) BASIC22.28■■□□□ 1.16
COL5A3P25940 AC074389.1-201ENST00000382528 1423 ntTSL 2 BASIC22.28■■□□□ 1.16
COL5A3P25940 STARD10-213ENST00000538536 1678 ntTSL 1 (best) BASIC22.28■■□□□ 1.16
COL5A3P25940 FOXN3-214ENST00000557258 2692 ntAPPRIS P3 TSL 1 (best) BASIC22.28■■□□□ 1.16
COL5A3P25940 CYP51A1P2-201ENST00000419457 1499 ntBASIC22.28■■□□□ 1.16
COL5A3P25940 APPL2-201ENST00000258530 3239 ntAPPRIS P1 TSL 1 (best) BASIC22.28■■□□□ 1.16
COL5A3P25940 NFATC4-228ENST00000556759 2025 ntTSL 1 (best) BASIC22.28■■□□□ 1.16
COL5A3P25940 NMRK2-201ENST00000168977 1126 ntAPPRIS P3 TSL 2 BASIC22.28■■□□□ 1.16
COL5A3P25940 H3F3C-201ENST00000340398 1057 ntAPPRIS P1 BASIC22.28■■□□□ 1.16
COL5A3P25940 ICAM2-202ENST00000418105 1252 ntAPPRIS P1 TSL 3 BASIC22.28■■□□□ 1.16
COL5A3P25940 NDUFAF5-203ENST00000463598 991 ntTSL 1 (best) BASIC22.28■■□□□ 1.16
COL5A3P25940 LAMTOR4-206ENST00000473459 720 ntTSL 2 BASIC22.28■■□□□ 1.16
COL5A3P25940 BLOC1S6-202ENST00000562384 494 ntTSL 4 BASIC22.28■■□□□ 1.16
COL5A3P25940 MARVELD3-206ENST00000567566 850 ntAPPRIS ALT2 TSL 1 (best) BASIC22.28■■□□□ 1.16
COL5A3P25940 ICAM2-208ENST00000579788 1103 ntAPPRIS P1 TSL 1 (best) BASIC22.28■■□□□ 1.16
COL5A3P25940 RAB3D-202ENST00000589655 924 ntAPPRIS P1 TSL 2 BASIC22.28■■□□□ 1.16
COL5A3P25940 AC023141.13-201ENST00000604991 943 ntBASIC22.28■■□□□ 1.16
COL5A3P25940 NMRK2-205ENST00000616156 1139 ntAPPRIS ALT2 TSL 5 BASIC22.28■■□□□ 1.16
COL5A3P25940 AC007064.4-201ENST00000637740 555 ntBASIC22.28■■□□□ 1.16
COL5A3P25940 GULP1-209ENST00000410051 1595 ntTSL 1 (best) BASIC22.28■■□□□ 1.16
COL5A3P25940 FOXS1-201ENST00000375978 1319 ntAPPRIS P1 BASIC22.28■■□□□ 1.16
COL5A3P25940 ZDHHC4-206ENST00000405731 1348 ntAPPRIS P1 TSL 1 (best) BASIC22.28■■□□□ 1.16
COL5A3P25940 RHD-207ENST00000454452 1303 ntTSL 1 (best) BASIC22.28■■□□□ 1.16
COL5A3P25940 CYP21A2-222ENST00000435122 1914 ntTSL 2 BASIC22.27■■□□□ 1.16
COL5A3P25940 CBX3P2-201ENST00000579647 1429 ntTSL 2 BASIC22.27■■□□□ 1.16
COL5A3P25940 FGFR2-208ENST00000360144 3001 ntTSL 2 BASIC22.27■■□□□ 1.16
COL5A3P25940 TMEM8B-204ENST00000439587 2150 ntTSL 1 (best) BASIC22.27■■□□□ 1.16
COL5A3P25940 ASTL-201ENST00000342380 1296 ntAPPRIS P1 TSL 1 (best) BASIC22.27■■□□□ 1.16
COL5A3P25940 LINC00982-205ENST00000420957 435 ntBASIC22.27■■□□□ 1.16
COL5A3P25940 AC106897.1-201ENST00000512874 394 ntTSL 2 BASIC22.27■■□□□ 1.16
COL5A3P25940 SLC9A3-AS1-205ENST00000606319 477 ntTSL 3 BASIC22.27■■□□□ 1.16
COL5A3P25940 CU104787.1-201ENST00000624155 288 ntTSL 1 (best) BASIC22.27■■□□□ 1.16
COL5A3P25940 AC244517.11-201ENST00000624192 573 ntTSL 5 BASIC22.27■■□□□ 1.16
COL5A3P25940 ST3GAL4-217ENST00000534083 1919 ntAPPRIS ALT1 TSL 5 BASIC22.27■■□□□ 1.16
COL5A3P25940 MFSD11-219ENST00000593181 1922 ntTSL 1 (best) BASIC22.27■■□□□ 1.16
COL5A3P25940 NSUN2-206ENST00000506139 2619 ntAPPRIS ALT2 TSL 2 BASIC22.27■■□□□ 1.16
COL5A3P25940 TM7SF3-201ENST00000343028 2709 ntAPPRIS P1 TSL 1 (best) BASIC22.27■■□□□ 1.16
COL5A3P25940 ALKBH4-201ENST00000292566 2105 ntAPPRIS P1 TSL 1 (best) BASIC22.27■■□□□ 1.16
COL5A3P25940 IGFALS-202ENST00000415638 2136 ntTSL 2 BASIC22.27■■□□□ 1.16
COL5A3P25940 AC025580.3-201ENST00000617932 1424 ntBASIC22.27■■□□□ 1.16
COL5A3P25940 CAMKK1-202ENST00000348335 3563 ntAPPRIS P1 TSL 1 (best) BASIC22.27■■□□□ 1.16
Retrieved 100 of 98,524 protein–RNA pairs in 39.7 ms