Protein–RNA interactions for Protein: P09017

HOXC4, Homeobox protein Hox-C4, humanhuman

Predicted RBP Predictions only

Length 264 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HOXC4P09017 CHAC1-202ENST00000446533 1849 ntTSL 1 (best) BASIC17.36■□□□□ 0.37
HOXC4P09017 PPP2R2C-209ENST00000515571 1832 ntTSL 1 (best) BASIC17.36■□□□□ 0.37
HOXC4P09017 C8orf58-207ENST00000615223 1848 ntAPPRIS ALT2 TSL 5 BASIC17.36■□□□□ 0.37
HOXC4P09017 TSKS-201ENST00000246801 1883 ntAPPRIS P2 TSL 1 (best) BASIC17.36■□□□□ 0.37
HOXC4P09017 NKIRAS1-207ENST00000437230 1898 ntAPPRIS ALT1 TSL 5 BASIC17.36■□□□□ 0.37
HOXC4P09017 AL512785.2-202ENST00000367932 830 ntTSL 4 BASIC17.36■□□□□ 0.37
HOXC4P09017 MYCLP1-201ENST00000372451 1075 ntBASIC17.36■□□□□ 0.37
HOXC4P09017 MRPL23-201ENST00000381514 919 ntTSL 3 BASIC17.36■□□□□ 0.37
HOXC4P09017 HDAC11-202ENST00000402259 1000 ntTSL 3 BASIC17.36■□□□□ 0.37
HOXC4P09017 AP000347.1-202ENST00000435868 847 ntBASIC17.36■□□□□ 0.37
HOXC4P09017 MOGAT1-201ENST00000446656 1048 ntAPPRIS P1 TSL 5 BASIC17.36■□□□□ 0.37
HOXC4P09017 PRSS21-202ENST00000450020 1106 ntTSL 1 (best) BASIC17.36■□□□□ 0.37
HOXC4P09017 IGHV3-52-201ENST00000519770 353 ntBASIC17.36■□□□□ 0.37
HOXC4P09017 AC069287.3-201ENST00000527297 589 ntTSL 5 BASIC17.36■□□□□ 0.37
HOXC4P09017 AL589182.1-202ENST00000548416 533 ntTSL 4 BASIC17.36■□□□□ 0.37
HOXC4P09017 AC133919.2-201ENST00000565965 589 ntTSL 4 BASIC17.36■□□□□ 0.37
HOXC4P09017 STK25P1-201ENST00000585406 838 ntBASIC17.36■□□□□ 0.37
HOXC4P09017 GPX4-212ENST00000616066 924 ntAPPRIS ALT1 TSL 5 BASIC17.36■□□□□ 0.37
HOXC4P09017 AC008735.5-201ENST00000623544 497 ntBASIC17.36■□□□□ 0.37
HOXC4P09017 GLS-202ENST00000338435 4475 ntAPPRIS ALT1 TSL 1 (best) BASIC17.36■□□□□ 0.37
HOXC4P09017 FAM189B-204ENST00000368368 2609 ntTSL 1 (best) BASIC17.36■□□□□ 0.37
HOXC4P09017 ESM1-201ENST00000381403 1326 ntTSL 1 (best) BASIC17.36■□□□□ 0.37
HOXC4P09017 DKK3-202ENST00000396505 2650 ntAPPRIS P1 TSL 1 (best) BASIC17.36■□□□□ 0.37
HOXC4P09017 ZRSR2-201ENST00000307771 1491 ntAPPRIS P1 TSL 1 (best) BASIC17.36■□□□□ 0.37
HOXC4P09017 CHGA-202ENST00000334654 1474 ntTSL 1 (best) BASIC17.36■□□□□ 0.37
HOXC4P09017 ILDR1-203ENST00000393631 1456 ntTSL 1 (best) BASIC17.36■□□□□ 0.37
HOXC4P09017 CBX1-202ENST00000393408 2422 ntAPPRIS P1 TSL 1 (best) BASIC17.36■□□□□ 0.37
HOXC4P09017 TM9SF1-206ENST00000528669 2425 ntTSL 5 BASIC17.36■□□□□ 0.37
HOXC4P09017 P2RY6-209ENST00000540342 1611 ntAPPRIS P1 TSL 2 BASIC17.36■□□□□ 0.37
HOXC4P09017 HLA-DQB1-201ENST00000374943 1656 ntBASIC17.36■□□□□ 0.37
HOXC4P09017 PLEKHH3-204ENST00000591022 2983 ntAPPRIS P2 TSL 1 (best) BASIC17.35■□□□□ 0.37
HOXC4P09017 AC013275.1-201ENST00000413602 2019 ntTSL 1 (best) BASIC17.35■□□□□ 0.37
HOXC4P09017 SPTBN4-207ENST00000595535 6105 ntTSL 5 BASIC17.35■□□□□ 0.37
HOXC4P09017 SIGLEC8-202ENST00000340550 1293 ntTSL 1 (best) BASIC17.35■□□□□ 0.37
HOXC4P09017 DPM3-201ENST00000341298 486 ntAPPRIS P1 TSL 2 BASIC17.35■□□□□ 0.37
HOXC4P09017 PSMA7-203ENST00000370873 996 ntAPPRIS P1 TSL 1 (best) BASIC17.35■□□□□ 0.37
HOXC4P09017 ODF3B-202ENST00000401779 869 ntTSL 1 (best) BASIC17.35■□□□□ 0.37
HOXC4P09017 CENPM-203ENST00000402338 1002 ntTSL 2 BASIC17.35■□□□□ 0.37
HOXC4P09017 ODF3B-203ENST00000403326 643 ntTSL 3 BASIC17.35■□□□□ 0.37
HOXC4P09017 ODF3B-205ENST00000428989 762 ntAPPRIS P1 TSL 1 (best) BASIC17.35■□□□□ 0.37
HOXC4P09017 SLC25A6P5-201ENST00000435663 894 ntBASIC17.35■□□□□ 0.37
HOXC4P09017 UBE2Q2P1-205ENST00000559871 534 ntTSL 5 BASIC17.35■□□□□ 0.37
HOXC4P09017 RNF151-202ENST00000569210 853 ntTSL 2 BASIC17.35■□□□□ 0.37
HOXC4P09017 MIR22HG-204ENST00000571595 767 ntTSL 5 BASIC17.35■□□□□ 0.37
HOXC4P09017 AC109462.3-201ENST00000573934 613 ntBASIC17.35■□□□□ 0.37
HOXC4P09017 MIEN1-205ENST00000577810 806 ntTSL 3 BASIC17.35■□□□□ 0.37
HOXC4P09017 ARMC7-204ENST00000582136 1204 ntTSL 2 BASIC17.35■□□□□ 0.37
HOXC4P09017 AC120114.3-201ENST00000611923 658 ntBASIC17.35■□□□□ 0.37
HOXC4P09017 AC116407.3-201ENST00000623905 1129 ntBASIC17.35■□□□□ 0.37
HOXC4P09017 BBC3-201ENST00000300880 1347 ntTSL 1 (best) BASIC17.35■□□□□ 0.37
HOXC4P09017 MARK2-211ENST00000513765 2671 ntAPPRIS ALT2 TSL 1 (best) BASIC17.35■□□□□ 0.37
HOXC4P09017 AC243591.1-201ENST00000452967 1364 ntBASIC17.35■□□□□ 0.37
HOXC4P09017 CIZ1-226ENST00000629610 2855 ntAPPRIS ALT2 TSL 2 BASIC17.35■□□□□ 0.37
HOXC4P09017 FOXL2-201ENST00000330315 2917 ntAPPRIS P1 BASIC17.35■□□□□ 0.37
HOXC4P09017 HLA-J-201ENST00000462773 1622 ntBASIC17.35■□□□□ 0.37
HOXC4P09017 KLHL29-203ENST00000486442 5287 ntAPPRIS P1 TSL 5 BASIC17.35■□□□□ 0.37
HOXC4P09017 KLHDC3-201ENST00000244670 1903 ntTSL 1 (best) BASIC17.35■□□□□ 0.37
HOXC4P09017 TCF25-225ENST00000614813 2047 ntTSL 5 BASIC17.35■□□□□ 0.37
HOXC4P09017 TAF15-211ENST00000604841 2140 ntAPPRIS ALT2 TSL 1 (best) BASIC17.35■□□□□ 0.37
HOXC4P09017 ASCC1-205ENST00000394919 2683 ntAPPRIS P1 TSL 2 BASIC17.34■□□□□ 0.37
HOXC4P09017 CASKIN1-201ENST00000343516 5759 ntAPPRIS P1 TSL 1 (best) BASIC17.34■□□□□ 0.37
HOXC4P09017 PPP2R5A-201ENST00000261461 3128 ntAPPRIS P1 TSL 1 (best) BASIC17.34■□□□□ 0.37
HOXC4P09017 HARS-201ENST00000307633 1780 ntTSL 2 BASIC17.34■□□□□ 0.37
HOXC4P09017 SIX5-201ENST00000317578 3318 ntAPPRIS P2 TSL 1 (best) BASIC17.34■□□□□ 0.37
HOXC4P09017 HNRNPK-202ENST00000360384 2038 ntAPPRIS ALT1 TSL 1 (best) BASIC17.34■□□□□ 0.37
HOXC4P09017 LAMC3-202ENST00000361069 6133 ntAPPRIS P1 TSL 2 BASIC17.34■□□□□ 0.37
HOXC4P09017 ITPKB-202ENST00000366784 3146 ntTSL 1 (best) BASIC17.34■□□□□ 0.37
HOXC4P09017 INIP-202ENST00000374236 874 ntTSL 2 BASIC17.34■□□□□ 0.37
HOXC4P09017 AC138969.1-205ENST00000381497 1552 ntAPPRIS P1 TSL 1 (best) BASIC17.34■□□□□ 0.37
HOXC4P09017 KRT15-203ENST00000393976 2394 ntAPPRIS P1 TSL 5 BASIC17.34■□□□□ 0.37
HOXC4P09017 SATB1-AS1-201ENST00000414198 737 ntTSL 2 BASIC17.34■□□□□ 0.37
HOXC4P09017 SLBP-202ENST00000429429 1623 ntTSL 2 BASIC17.34■□□□□ 0.37
HOXC4P09017 HFE-210ENST00000470149 1123 ntAPPRIS ALT2 TSL 1 (best) BASIC17.34■□□□□ 0.37
HOXC4P09017 CMPK1-205ENST00000471289 816 ntTSL 2 BASIC17.34■□□□□ 0.37
HOXC4P09017 BX005266.1-201ENST00000473402 457 ntBASIC17.34■□□□□ 0.37
HOXC4P09017 CPEB2-207ENST00000507071 2103 ntAPPRIS ALT2 TSL 1 (best) BASIC17.34■□□□□ 0.37
HOXC4P09017 DTX3-204ENST00000548804 2067 ntAPPRIS P3 TSL 5 BASIC17.34■□□□□ 0.37
HOXC4P09017 AL157871.1-202ENST00000556458 478 ntTSL 5 BASIC17.34■□□□□ 0.37
HOXC4P09017 PRSS8-206ENST00000568261 1214 ntTSL 2 BASIC17.34■□□□□ 0.37
HOXC4P09017 AC008878.2-201ENST00000601870 942 ntAPPRIS P1 TSL 4 BASIC17.34■□□□□ 0.37
HOXC4P09017 AL049840.3-201ENST00000602669 611 ntBASIC17.34■□□□□ 0.37
HOXC4P09017 AC018529.2-201ENST00000612024 828 ntTSL 4 BASIC17.34■□□□□ 0.37
HOXC4P09017 AL589182.2-201ENST00000619332 1049 ntBASIC17.34■□□□□ 0.37
HOXC4P09017 IL18BP-214ENST00000620017 1566 ntTSL 5 BASIC17.34■□□□□ 0.37
HOXC4P09017 ABBA01031661.1-201ENST00000634362 1253 ntBASIC17.34■□□□□ 0.37
HOXC4P09017 NAB2-201ENST00000300131 2711 ntAPPRIS P1 TSL 1 (best) BASIC17.34■□□□□ 0.37
HOXC4P09017 APAF1-210ENST00000551964 5444 ntAPPRIS P4 TSL 1 (best) BASIC17.34■□□□□ 0.37
HOXC4P09017 ANKS3-230ENST00000614075 2387 ntAPPRIS P1 TSL 5 BASIC17.33■□□□□ 0.37
HOXC4P09017 KCNQ5-201ENST00000342056 6688 ntAPPRIS ALT1 TSL 5 BASIC17.33■□□□□ 0.37
HOXC4P09017 RABL2A-204ENST00000393167 2179 ntAPPRIS P3 TSL 1 (best) BASIC17.33■□□□□ 0.37
HOXC4P09017 ETFBKMT-202ENST00000395763 2055 ntAPPRIS P1 TSL 1 (best) BASIC17.33■□□□□ 0.37
HOXC4P09017 PPT2-247ENST00000375143 1754 ntAPPRIS ALT2 TSL 5 BASIC17.33■□□□□ 0.37
HOXC4P09017 C14orf93-204ENST00000397377 1776 ntTSL 1 (best) BASIC17.33■□□□□ 0.37
HOXC4P09017 TCP11L2-203ENST00000547153 1788 ntTSL 2 BASIC17.33■□□□□ 0.37
HOXC4P09017 PSRC1-203ENST00000369907 1717 ntAPPRIS P3 TSL 1 (best) BASIC17.33■□□□□ 0.37
HOXC4P09017 PSRC1-206ENST00000409267 1730 ntAPPRIS P3 TSL 5 BASIC17.33■□□□□ 0.37
HOXC4P09017 NKIRAS2-207ENST00000449471 1461 ntTSL 2 BASIC17.33■□□□□ 0.37
HOXC4P09017 CHRNG-201ENST00000389492 1398 ntTSL 1 (best) BASIC17.33■□□□□ 0.36
HOXC4P09017 RBM26-202ENST00000438724 5152 ntAPPRIS ALT1 TSL 1 (best) BASIC17.33■□□□□ 0.36
HOXC4P09017 VMO1-202ENST00000354194 651 ntTSL 1 (best) BASIC17.33■□□□□ 0.36
Retrieved 100 of 98,524 protein–RNA pairs in 58.1 ms