Protein–RNA interactions for Protein: H3BMG3

SMKR1, Small lysine-rich protein 1, humanhuman

Predictions only

Length 65 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SMKR1H3BMG3 SERTM1-201ENST00000315190 3207 ntAPPRIS P1 TSL 1 (best) BASIC13.09□□□□□ -0.31
SMKR1H3BMG3 TSPOAP1-202ENST00000343736 5947 ntAPPRIS P3 TSL 1 (best) BASIC13.09□□□□□ -0.31
SMKR1H3BMG3 INPP4A-202ENST00000409016 9996 ntAPPRIS P1 TSL 1 (best) BASIC13.08□□□□□ -0.31
SMKR1H3BMG3 FLJ38576-201ENST00000623820 2459 ntBASIC13.08□□□□□ -0.31
SMKR1H3BMG3 MICALL2-201ENST00000297508 3121 ntAPPRIS P1 TSL 1 (best) BASIC13.08□□□□□ -0.31
SMKR1H3BMG3 GABRB3-215ENST00000622697 5876 ntTSL 5 BASIC13.08□□□□□ -0.31
SMKR1H3BMG3 KCNC1-202ENST00000379472 7965 ntTSL 1 (best) BASIC13.08□□□□□ -0.31
SMKR1H3BMG3 CADPS2-204ENST00000412584 4308 ntAPPRIS P2 TSL 1 (best) BASIC13.08□□□□□ -0.32
SMKR1H3BMG3 ETV4-211ENST00000591713 1727 ntAPPRIS P1 TSL 1 (best) BASIC13.08□□□□□ -0.32
SMKR1H3BMG3 ASIC3-203ENST00000357922 2232 ntTSL 1 (best) BASIC13.08□□□□□ -0.32
SMKR1H3BMG3 LINC02199-201ENST00000506655 2702 ntBASIC13.08□□□□□ -0.32
SMKR1H3BMG3 STAC-201ENST00000273183 3227 ntAPPRIS P1 TSL 1 (best) BASIC13.08□□□□□ -0.32
SMKR1H3BMG3 ETV7-204ENST00000373738 1570 ntTSL 1 (best) BASIC13.08□□□□□ -0.32
SMKR1H3BMG3 ETV7-207ENST00000620358 1599 ntTSL 1 (best) BASIC13.08□□□□□ -0.32
SMKR1H3BMG3 SERINC2-205ENST00000536384 2062 ntTSL 2 BASIC13.08□□□□□ -0.32
SMKR1H3BMG3 RAB31-207ENST00000578921 4055 ntAPPRIS P1 TSL 1 (best) BASIC13.08□□□□□ -0.32
SMKR1H3BMG3 ZNF134-201ENST00000396161 4914 ntAPPRIS P1 TSL 1 (best) BASIC13.08□□□□□ -0.32
SMKR1H3BMG3 KLHDC8A-205ENST00000539253 2931 ntAPPRIS P1 TSL 5 BASIC13.08□□□□□ -0.32
SMKR1H3BMG3 CSK-210ENST00000567571 2443 ntAPPRIS P1 TSL 2 BASIC13.08□□□□□ -0.32
SMKR1H3BMG3 CGB7-202ENST00000596965 1949 ntAPPRIS P1 TSL 2 BASIC13.08□□□□□ -0.32
SMKR1H3BMG3 PAPLN-202ENST00000340738 5834 ntAPPRIS P2 TSL 5 BASIC13.08□□□□□ -0.32
SMKR1H3BMG3 LGALS12-205ENST00000425950 1789 ntTSL 1 (best) BASIC13.08□□□□□ -0.32
SMKR1H3BMG3 PEG3-206ENST00000598410 5304 ntTSL 1 (best) BASIC13.08□□□□□ -0.32
SMKR1H3BMG3 SCAF1-201ENST00000360565 4306 ntAPPRIS P2 TSL 2 BASIC13.08□□□□□ -0.32
SMKR1H3BMG3 DNAAF2-201ENST00000298292 2963 ntAPPRIS P3 TSL 1 (best) BASIC13.08□□□□□ -0.32
SMKR1H3BMG3 SLC29A4P1-201ENST00000398760 971 ntBASIC13.08□□□□□ -0.32
SMKR1H3BMG3 DGCR6L-202ENST00000405465 962 ntTSL 3 BASIC13.08□□□□□ -0.32
SMKR1H3BMG3 AC079145.1-201ENST00000416575 541 ntTSL 2 BASIC13.08□□□□□ -0.32
SMKR1H3BMG3 CROCCP5-201ENST00000436658 830 ntBASIC13.08□□□□□ -0.32
SMKR1H3BMG3 ELP6-205ENST00000439305 880 ntTSL 2 BASIC13.08□□□□□ -0.32
SMKR1H3BMG3 AC026185.1-201ENST00000445748 174 ntBASIC13.08□□□□□ -0.32
SMKR1H3BMG3 NCBP2-207ENST00000452404 1133 ntTSL 2 BASIC13.08□□□□□ -0.32
SMKR1H3BMG3 AC091390.4-202ENST00000476426 537 ntBASIC13.08□□□□□ -0.32
SMKR1H3BMG3 SIDT2-217ENST00000532062 2143 ntTSL 2 BASIC13.08□□□□□ -0.32
SMKR1H3BMG3 CAMTA1-216ENST00000557126 486 ntTSL 2 BASIC13.08□□□□□ -0.32
SMKR1H3BMG3 AF274858.3-202ENST00000569906 755 ntTSL 3 BASIC13.08□□□□□ -0.32
SMKR1H3BMG3 MAZ-215ENST00000569978 567 ntTSL 1 (best) BASIC13.08□□□□□ -0.32
SMKR1H3BMG3 LITAF-205ENST00000570904 1118 ntAPPRIS P1 TSL 1 (best) BASIC13.08□□□□□ -0.32
SMKR1H3BMG3 LINC00654-202ENST00000589201 579 ntTSL 3 BASIC13.08□□□□□ -0.32
SMKR1H3BMG3 AC131212.4-201ENST00000623606 975 ntBASIC13.08□□□□□ -0.32
SMKR1H3BMG3 GFOD1-203ENST00000379287 8751 ntAPPRIS P1 TSL 1 (best) BASIC13.08□□□□□ -0.32
SMKR1H3BMG3 FAM110A-201ENST00000246100 1619 ntAPPRIS P1 TSL 1 (best) BASIC13.08□□□□□ -0.32
SMKR1H3BMG3 PIGQ-201ENST00000026218 2846 ntTSL 1 (best) BASIC13.08□□□□□ -0.32
SMKR1H3BMG3 DNAAF2-202ENST00000406043 2819 ntAPPRIS ALT2 TSL 1 (best) BASIC13.08□□□□□ -0.32
SMKR1H3BMG3 HAUS4-217ENST00000555367 1454 ntTSL 5 BASIC13.08□□□□□ -0.32
SMKR1H3BMG3 RAB39A-201ENST00000320578 1830 ntAPPRIS P1 TSL 1 (best) BASIC13.08□□□□□ -0.32
SMKR1H3BMG3 ZMYM3-203ENST00000373981 1841 ntTSL 1 (best) BASIC13.08□□□□□ -0.32
SMKR1H3BMG3 HECTD1-201ENST00000399332 9134 ntAPPRIS P1 TSL 5 BASIC13.08□□□□□ -0.32
SMKR1H3BMG3 FDXR-205ENST00000544854 1827 ntTSL 2 BASIC13.08□□□□□ -0.32
SMKR1H3BMG3 PML-206ENST00000395135 2199 ntAPPRIS ALT2 TSL 1 (best) BASIC13.08□□□□□ -0.32
SMKR1H3BMG3 PRKCSH-205ENST00000587327 2189 ntAPPRIS ALT2 TSL 2 BASIC13.08□□□□□ -0.32
SMKR1H3BMG3 HDAC5-201ENST00000225983 5326 ntAPPRIS P3 TSL 5 BASIC13.08□□□□□ -0.32
SMKR1H3BMG3 NGFR-201ENST00000172229 3417 ntAPPRIS P1 TSL 1 (best) BASIC13.08□□□□□ -0.32
SMKR1H3BMG3 ZNF385A-212ENST00000551109 2369 ntTSL 5 BASIC13.08□□□□□ -0.32
SMKR1H3BMG3 CDKN2B-AS1-217ENST00000585267 1337 ntTSL 1 (best) BASIC13.08□□□□□ -0.32
SMKR1H3BMG3 FBXO21-201ENST00000330622 2906 ntAPPRIS P3 TSL 1 (best) BASIC13.08□□□□□ -0.32
SMKR1H3BMG3 BBS5-201ENST00000295240 3475 ntAPPRIS P1 TSL 1 (best) BASIC13.08□□□□□ -0.32
SMKR1H3BMG3 CXXC1P1-201ENST00000483225 1897 ntTSL 2 BASIC13.08□□□□□ -0.32
SMKR1H3BMG3 SARS2-201ENST00000221431 2057 ntAPPRIS P2 TSL 1 (best) BASIC13.08□□□□□ -0.32
SMKR1H3BMG3 RDH8-203ENST00000591589 1715 ntAPPRIS P1 TSL 1 (best) BASIC13.08□□□□□ -0.32
SMKR1H3BMG3 OCIAD1-204ENST00000425583 1915 ntTSL 3 BASIC13.07□□□□□ -0.32
SMKR1H3BMG3 GPBAR1-202ENST00000519574 1382 ntAPPRIS P1 TSL 1 (best) BASIC13.07□□□□□ -0.32
SMKR1H3BMG3 ITGB1BP1-204ENST00000360635 4859 ntAPPRIS P1 TSL 5 BASIC13.07□□□□□ -0.32
SMKR1H3BMG3 TCF3-212ENST00000588136 2658 ntAPPRIS ALT2 TSL 2 BASIC13.07□□□□□ -0.32
SMKR1H3BMG3 TRABD2A-202ENST00000409133 1554 ntTSL 1 (best) BASIC13.07□□□□□ -0.32
SMKR1H3BMG3 PHF1-202ENST00000374516 2330 ntAPPRIS P1 TSL 1 (best) BASIC13.07□□□□□ -0.32
SMKR1H3BMG3 CEP104-202ENST00000378230 6424 ntAPPRIS P1 TSL 5 BASIC13.07□□□□□ -0.32
SMKR1H3BMG3 ADAM11-203ENST00000535346 2529 ntTSL 2 BASIC13.07□□□□□ -0.32
SMKR1H3BMG3 NKPD1-201ENST00000317951 4233 ntAPPRIS P1 TSL 2 BASIC13.07□□□□□ -0.32
SMKR1H3BMG3 SCNN1D-206ENST00000400928 2731 ntAPPRIS ALT2 TSL 5 BASIC13.07□□□□□ -0.32
SMKR1H3BMG3 AC100803.2-201ENST00000562459 1963 ntBASIC13.07□□□□□ -0.32
SMKR1H3BMG3 CXXC1-201ENST00000285106 2936 ntAPPRIS P3 TSL 1 (best) BASIC13.07□□□□□ -0.32
SMKR1H3BMG3 PRDM8-201ENST00000339711 4095 ntAPPRIS P1 TSL 1 (best) BASIC13.07□□□□□ -0.32
SMKR1H3BMG3 DNAAF1-201ENST00000378553 2379 ntAPPRIS P1 TSL 1 (best) BASIC13.07□□□□□ -0.32
SMKR1H3BMG3 HYMAI-201ENST00000635591 3347 ntBASIC13.07□□□□□ -0.32
SMKR1H3BMG3 TNFRSF19-202ENST00000382258 1625 ntAPPRIS P4 TSL 1 (best) BASIC13.07□□□□□ -0.32
SMKR1H3BMG3 SLC1A6-208ENST00000598504 2987 ntTSL 1 (best) BASIC13.07□□□□□ -0.32
SMKR1H3BMG3 SMIM25-203ENST00000425497 2010 ntTSL 1 (best) BASIC13.07□□□□□ -0.32
SMKR1H3BMG3 GMPPB-201ENST00000308375 3217 ntTSL 2 BASIC13.07□□□□□ -0.32
SMKR1H3BMG3 ADGRA1-AS1-201ENST00000366099 3236 ntBASIC13.07□□□□□ -0.32
SMKR1H3BMG3 C2CD4A-201ENST00000355522 3445 ntAPPRIS P1 TSL 1 (best) BASIC13.07□□□□□ -0.32
SMKR1H3BMG3 TMPO-201ENST00000261210 820 ntTSL 1 (best) BASIC13.07□□□□□ -0.32
SMKR1H3BMG3 AP2S1-201ENST00000263270 935 ntAPPRIS P3 TSL 1 (best) BASIC13.07□□□□□ -0.32
SMKR1H3BMG3 POMC-201ENST00000264708 1074 ntAPPRIS P1 TSL 2 BASIC13.07□□□□□ -0.32
SMKR1H3BMG3 NFS1-201ENST00000306750 738 ntTSL 1 (best) BASIC13.07□□□□□ -0.32
SMKR1H3BMG3 GGTLC1-203ENST00000335694 1046 ntAPPRIS P1 TSL 1 (best) BASIC13.07□□□□□ -0.32
SMKR1H3BMG3 AKR1A1-201ENST00000351829 1166 ntAPPRIS P1 TSL 1 (best) BASIC13.07□□□□□ -0.32
SMKR1H3BMG3 AC073316.3-201ENST00000437354 982 ntTSL 3 BASIC13.07□□□□□ -0.32
SMKR1H3BMG3 Z98884.1-201ENST00000451646 830 ntTSL 3 BASIC13.07□□□□□ -0.32
SMKR1H3BMG3 LINC00636-201ENST00000494231 1264 ntTSL 1 (best) BASIC13.07□□□□□ -0.32
SMKR1H3BMG3 AC087498.1-201ENST00000572493 945 ntAPPRIS P1 BASIC13.07□□□□□ -0.32
SMKR1H3BMG3 MIR4758-201ENST00000577688 71 ntBASIC13.07□□□□□ -0.32
SMKR1H3BMG3 AC083880.1-201ENST00000608266 535 ntBASIC13.07□□□□□ -0.32
SMKR1H3BMG3 AC008622.2-201ENST00000617006 1229 ntBASIC13.07□□□□□ -0.32
SMKR1H3BMG3 UNC119B-201ENST00000344651 4404 ntAPPRIS P1 TSL 2 BASIC13.07□□□□□ -0.32
SMKR1H3BMG3 BCAR1-206ENST00000535626 2894 ntTSL 2 BASIC13.07□□□□□ -0.32
SMKR1H3BMG3 RGS6-210ENST00000553530 5685 ntAPPRIS P3 TSL 1 (best) BASIC13.07□□□□□ -0.32
SMKR1H3BMG3 SCUBE2-207ENST00000520467 3148 ntAPPRIS P1 TSL 2 BASIC13.07□□□□□ -0.32
SMKR1H3BMG3 C10orf10-201ENST00000298295 2120 ntAPPRIS P1 TSL 1 (best) BASIC13.07□□□□□ -0.32
SMKR1H3BMG3 ARHGEF25-208ENST00000616622 2103 ntTSL 2 BASIC13.07□□□□□ -0.32
Retrieved 100 of 98,524 protein–RNA pairs in 39.3 ms