Protein–RNA interactions for Protein: A6NMZ7

COL6A6, Collagen alpha-6(VI) chain, humanhuman

Predictions only

Length 2,263 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL6A6A6NMZ7 LINC02415-201ENST00000508505 1315 ntTSL 1 (best) BASIC16.01■□□□□ 0.15
COL6A6A6NMZ7 LINC01485-205ENST00000523617 586 ntTSL 2 BASIC16.01■□□□□ 0.15
COL6A6A6NMZ7 PAAF1-205ENST00000535604 1695 ntTSL 5 BASIC16.01■□□□□ 0.15
COL6A6A6NMZ7 BLOC1S1-201ENST00000547076 837 ntTSL 2 BASIC16.01■□□□□ 0.15
COL6A6A6NMZ7 AC023355.1-201ENST00000560323 752 ntTSL 3 BASIC16.01■□□□□ 0.15
COL6A6A6NMZ7 AL138781.1-202ENST00000563018 775 ntTSL 3 BASIC16.01■□□□□ 0.15
COL6A6A6NMZ7 ZFPM1-204ENST00000563351 808 ntTSL 2 BASIC16.01■□□□□ 0.15
COL6A6A6NMZ7 TMEM220-AS1-206ENST00000583343 876 ntTSL 3 BASIC16.01■□□□□ 0.15
COL6A6A6NMZ7 AL032819.2-201ENST00000624543 2162 ntBASIC16.01■□□□□ 0.15
COL6A6A6NMZ7 ME2-218ENST00000640965 2476 ntTSL 5 BASIC16■□□□□ 0.15
COL6A6A6NMZ7 AC016065.1-201ENST00000500118 2413 ntTSL 2 BASIC16■□□□□ 0.15
COL6A6A6NMZ7 DDX19B-207ENST00000563206 1765 ntTSL 5 BASIC16■□□□□ 0.15
COL6A6A6NMZ7 AC242426.3-201ENST00000440377 1571 ntTSL 2 BASIC16■□□□□ 0.15
COL6A6A6NMZ7 DPM2-201ENST00000314392 1542 ntAPPRIS P1 TSL 1 (best) BASIC16■□□□□ 0.15
COL6A6A6NMZ7 PKD1L2-209ENST00000531391 1488 ntTSL 1 (best) BASIC16■□□□□ 0.15
COL6A6A6NMZ7 DGKZ-203ENST00000421244 2862 ntAPPRIS ALT2 TSL 1 (best) BASIC16■□□□□ 0.15
COL6A6A6NMZ7 LCE3E-201ENST00000368789 611 ntAPPRIS P1 TSL 1 (best) BASIC16■□□□□ 0.15
COL6A6A6NMZ7 CENPM-203ENST00000402338 1002 ntTSL 2 BASIC16■□□□□ 0.15
COL6A6A6NMZ7 UGT1A2P-201ENST00000454886 866 ntBASIC16■□□□□ 0.15
COL6A6A6NMZ7 C9orf147-204ENST00000463223 863 ntTSL 3 BASIC16■□□□□ 0.15
COL6A6A6NMZ7 GSTK1-207ENST00000479303 1185 ntTSL 1 (best) BASIC16■□□□□ 0.15
COL6A6A6NMZ7 SLC25A30-AS1-201ENST00000506633 701 ntTSL 3 BASIC16■□□□□ 0.15
COL6A6A6NMZ7 SEPT8-216ENST00000620483 4335 ntTSL 5 BASIC16■□□□□ 0.15
COL6A6A6NMZ7 PDE9A-203ENST00000335440 1728 ntTSL 1 (best) BASIC16■□□□□ 0.15
COL6A6A6NMZ7 TMEM86B-201ENST00000327042 1637 ntAPPRIS P1 TSL 1 (best) BASIC16■□□□□ 0.15
COL6A6A6NMZ7 HLA-A-203ENST00000376809 1611 ntAPPRIS P1 BASIC16■□□□□ 0.15
COL6A6A6NMZ7 NDUFV1-201ENST00000322776 1596 ntAPPRIS P3 TSL 1 (best) BASIC16■□□□□ 0.15
COL6A6A6NMZ7 CPZ-201ENST00000315782 2136 ntAPPRIS P3 TSL 1 (best) BASIC16■□□□□ 0.15
COL6A6A6NMZ7 AD000671.2-201ENST00000589807 1925 ntAPPRIS P1 TSL 2 BASIC16■□□□□ 0.15
COL6A6A6NMZ7 GLS-202ENST00000338435 4475 ntAPPRIS ALT1 TSL 1 (best) BASIC16■□□□□ 0.15
COL6A6A6NMZ7 DBI-201ENST00000311521 714 ntTSL 1 (best) BASIC15.99■□□□□ 0.15
COL6A6A6NMZ7 COLEC11-202ENST00000349077 1259 ntAPPRIS P1 TSL 1 (best) BASIC15.99■□□□□ 0.15
COL6A6A6NMZ7 AL359764.1-201ENST00000444330 504 ntTSL 3 BASIC15.99■□□□□ 0.15
COL6A6A6NMZ7 LINC00473-201ENST00000444465 798 ntTSL 3 BASIC15.99■□□□□ 0.15
COL6A6A6NMZ7 RPS15P9-201ENST00000494093 319 ntBASIC15.99■□□□□ 0.15
COL6A6A6NMZ7 AZIN1-AS1-212ENST00000520538 476 ntTSL 3 BASIC15.99■□□□□ 0.15
COL6A6A6NMZ7 RIC8B-209ENST00000549643 571 ntTSL 4 BASIC15.99■□□□□ 0.15
COL6A6A6NMZ7 AL133467.1-201ENST00000554161 993 ntTSL 2 BASIC15.99■□□□□ 0.15
COL6A6A6NMZ7 FGFR3-205ENST00000440486 4287 ntAPPRIS P3 TSL 5 BASIC15.99■□□□□ 0.15
COL6A6A6NMZ7 FAM157B-201ENST00000446912 1795 ntTSL 2 BASIC15.99■□□□□ 0.15
COL6A6A6NMZ7 LINC00668-205ENST00000581571 1748 ntTSL 1 (best) BASIC15.99■□□□□ 0.15
COL6A6A6NMZ7 RELB-201ENST00000221452 2294 ntAPPRIS P2 TSL 1 (best) BASIC15.99■□□□□ 0.15
COL6A6A6NMZ7 TAF15-215ENST00000605844 2191 ntAPPRIS P3 TSL 1 (best) BASIC15.99■□□□□ 0.15
COL6A6A6NMZ7 LEFTY2-202ENST00000420304 2085 ntTSL 2 BASIC15.99■□□□□ 0.15
COL6A6A6NMZ7 CACNA1B-203ENST00000371355 9647 ntAPPRIS ALT2 TSL 5 BASIC15.99■□□□□ 0.15
COL6A6A6NMZ7 DMPK-203ENST00000354227 1982 ntTSL 2 BASIC15.99■□□□□ 0.15
COL6A6A6NMZ7 SDCBP2-201ENST00000339987 1404 ntAPPRIS P1 TSL 1 (best) BASIC15.99■□□□□ 0.15
COL6A6A6NMZ7 BSCL2-210ENST00000421906 1440 ntAPPRIS P3 TSL 5 BASIC15.99■□□□□ 0.15
COL6A6A6NMZ7 GOSR2-226ENST00000639287 2367 ntTSL 5 BASIC15.99■□□□□ 0.15
COL6A6A6NMZ7 ACADVL-203ENST00000356839 2323 ntAPPRIS P1 TSL 1 (best) BASIC15.99■□□□□ 0.15
COL6A6A6NMZ7 PLXNB2-214ENST00000614805 1387 ntTSL 5 BASIC15.99■□□□□ 0.15
COL6A6A6NMZ7 ARSA-203ENST00000395619 1824 ntAPPRIS P1 TSL 5 BASIC15.99■□□□□ 0.15
COL6A6A6NMZ7 DMRT2-204ENST00000382251 2292 ntAPPRIS P1 TSL 5 BASIC15.99■□□□□ 0.15
COL6A6A6NMZ7 ZDHHC19-201ENST00000296326 1306 ntAPPRIS P1 TSL 5 BASIC15.99■□□□□ 0.15
COL6A6A6NMZ7 ESM1-201ENST00000381403 1326 ntTSL 1 (best) BASIC15.99■□□□□ 0.15
COL6A6A6NMZ7 PTHLH-203ENST00000395872 1318 ntAPPRIS ALT1 TSL 5 BASIC15.99■□□□□ 0.15
COL6A6A6NMZ7 VCX2-201ENST00000317103 815 ntAPPRIS P1 TSL 1 (best) BASIC15.99■□□□□ 0.15
COL6A6A6NMZ7 CKLF-204ENST00000362093 412 ntAPPRIS ALT2 TSL 1 (best) BASIC15.99■□□□□ 0.15
COL6A6A6NMZ7 SELENOH-201ENST00000388857 833 ntAPPRIS P2 TSL 1 (best) BASIC15.99■□□□□ 0.15
COL6A6A6NMZ7 ZC3H12D-202ENST00000409948 753 ntTSL 3 BASIC15.99■□□□□ 0.15
COL6A6A6NMZ7 DICER1-AS1-202ENST00000439819 810 ntTSL 3 BASIC15.99■□□□□ 0.15
COL6A6A6NMZ7 AP000892.1-201ENST00000504906 488 ntTSL 3 BASIC15.99■□□□□ 0.15
COL6A6A6NMZ7 PTHLH-206ENST00000538310 854 ntTSL 5 BASIC15.99■□□□□ 0.15
COL6A6A6NMZ7 AC005759.1-201ENST00000594805 855 ntTSL 3 BASIC15.99■□□□□ 0.15
COL6A6A6NMZ7 VCX-203ENST00000620630 812 ntAPPRIS ALT2 TSL 5 BASIC15.99■□□□□ 0.15
COL6A6A6NMZ7 AC004790.2-201ENST00000623588 572 ntBASIC15.99■□□□□ 0.15
COL6A6A6NMZ7 CSF3-202ENST00000331769 1673 ntAPPRIS ALT2 TSL 1 (best) BASIC15.99■□□□□ 0.15
COL6A6A6NMZ7 BHLHE22-201ENST00000321870 3262 ntAPPRIS P1 BASIC15.99■□□□□ 0.15
COL6A6A6NMZ7 AC148477.5-201ENST00000625164 1645 ntBASIC15.99■□□□□ 0.15
COL6A6A6NMZ7 LINC01547-202ENST00000397841 2303 ntTSL 2 BASIC15.99■□□□□ 0.15
COL6A6A6NMZ7 DBNDD2-204ENST00000372712 1537 ntAPPRIS P1 TSL 5 BASIC15.99■□□□□ 0.15
COL6A6A6NMZ7 COA5-201ENST00000328709 1754 ntAPPRIS P1 TSL 1 (best) BASIC15.99■□□□□ 0.15
COL6A6A6NMZ7 CAPS-201ENST00000452990 1789 ntTSL 5 BASIC15.99■□□□□ 0.15
COL6A6A6NMZ7 CSPG5-203ENST00000456150 2089 ntTSL 1 (best) BASIC15.99■□□□□ 0.15
COL6A6A6NMZ7 LRR1-201ENST00000298288 1745 ntAPPRIS P1 TSL 1 (best) BASIC15.99■□□□□ 0.15
COL6A6A6NMZ7 AZI2-205ENST00000420543 1366 ntTSL 3 BASIC15.99■□□□□ 0.15
COL6A6A6NMZ7 ZNF346-201ENST00000358149 2314 ntAPPRIS P1 TSL 1 (best) BASIC15.98■□□□□ 0.15
COL6A6A6NMZ7 TRIP6-209ENST00000619988 1303 ntTSL 1 (best) BASIC15.98■□□□□ 0.15
COL6A6A6NMZ7 TEX12-201ENST00000280358 1147 ntAPPRIS P1 TSL 1 (best) BASIC15.98■□□□□ 0.15
COL6A6A6NMZ7 SPDYE21P-201ENST00000413323 827 ntBASIC15.98■□□□□ 0.15
COL6A6A6NMZ7 GOLGA6L11P-201ENST00000417252 1298 ntBASIC15.98■□□□□ 0.15
COL6A6A6NMZ7 PARD6G-203ENST00000470488 596 ntTSL 1 (best) BASIC15.98■□□□□ 0.15
COL6A6A6NMZ7 AC122714.2-201ENST00000502787 707 ntBASIC15.98■□□□□ 0.15
COL6A6A6NMZ7 OR10S1-201ENST00000531945 1121 ntAPPRIS P2 BASIC15.98■□□□□ 0.15
COL6A6A6NMZ7 AL596325.1-201ENST00000563991 1082 ntBASIC15.98■□□□□ 0.15
COL6A6A6NMZ7 AC005330.1-201ENST00000590086 1238 ntTSL 5 BASIC15.98■□□□□ 0.15
COL6A6A6NMZ7 Z94160.2-201ENST00000609322 910 ntTSL 1 (best) BASIC15.98■□□□□ 0.15
COL6A6A6NMZ7 RAB9A-203ENST00000618931 737 ntAPPRIS P1 TSL 2 BASIC15.98■□□□□ 0.15
COL6A6A6NMZ7 OR10S1-202ENST00000641123 1121 ntAPPRIS ALT2 BASIC15.98■□□□□ 0.15
COL6A6A6NMZ7 AC010460.3-201ENST00000511359 1579 ntBASIC15.98■□□□□ 0.15
COL6A6A6NMZ7 PSMD8-207ENST00000592035 1581 ntTSL 1 (best) BASIC15.98■□□□□ 0.15
COL6A6A6NMZ7 MID1IP1-202ENST00000378474 1889 ntAPPRIS P1 TSL 1 (best) BASIC15.98■□□□□ 0.15
COL6A6A6NMZ7 TMEM82-201ENST00000375782 1520 ntAPPRIS P1 TSL 1 (best) BASIC15.98■□□□□ 0.15
COL6A6A6NMZ7 ATP5G2-201ENST00000338662 1792 ntTSL 2 BASIC15.98■□□□□ 0.15
COL6A6A6NMZ7 ASMTL-206ENST00000534940 2048 ntTSL 2 BASIC15.98■□□□□ 0.15
COL6A6A6NMZ7 AL499627.1-201ENST00000569373 2188 ntBASIC15.98■□□□□ 0.15
COL6A6A6NMZ7 ZNF385C-201ENST00000436535 1572 ntAPPRIS P1 TSL 5 BASIC15.98■□□□□ 0.15
COL6A6A6NMZ7 AC141586.3-201ENST00000562166 1838 ntBASIC15.98■□□□□ 0.15
COL6A6A6NMZ7 PRLH-201ENST00000165524 264 ntAPPRIS P1 TSL 1 (best) BASIC15.98■□□□□ 0.15
COL6A6A6NMZ7 POP7-201ENST00000303151 927 ntAPPRIS P1 TSL 1 (best) BASIC15.98■□□□□ 0.15
Retrieved 100 of 98,524 protein–RNA pairs in 40.3 ms