Protein–RNA interactions for Protein: P52701

MSH6, DNA mismatch repair protein Msh6, humanhuman

Predictions only

Length 1,360 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
MSH6P52701 SZT2-202ENST00000372450 1191 ntAPPRIS ALT2 TSL 1 (best) BASIC24.59■■□□□ 1.53
MSH6P52701 YAE1D1-202ENST00000432096 968 ntTSL 2 BASIC24.59■■□□□ 1.53
MSH6P52701 PON3-205ENST00000451904 1053 ntTSL 3 BASIC24.59■■□□□ 1.53
MSH6P52701 LINC00595-207ENST00000476909 792 ntTSL 2 BASIC24.59■■□□□ 1.53
MSH6P52701 SPINK2-203ENST00000506738 763 ntAPPRIS ALT2 TSL 2 BASIC24.59■■□□□ 1.53
MSH6P52701 ERI1-203ENST00000519292 2107 ntAPPRIS P1 TSL 2 BASIC24.59■■□□□ 1.53
MSH6P52701 CDCP2-202ENST00000530059 1623 ntAPPRIS ALT2 TSL 5 BASIC24.59■■□□□ 1.53
MSH6P52701 CYBA-210ENST00000569359 1415 ntTSL 1 (best) BASIC24.59■■□□□ 1.53
MSH6P52701 TVP23B-206ENST00000574226 1080 ntAPPRIS ALT1 TSL 1 (best) BASIC24.59■■□□□ 1.53
MSH6P52701 TBX18-206ENST00000606784 1230 ntTSL 1 (best) BASIC24.59■■□□□ 1.53
MSH6P52701 GGTLC5P-201ENST00000617623 998 ntBASIC24.59■■□□□ 1.53
MSH6P52701 AC132938.6-201ENST00000623828 1655 ntBASIC24.59■■□□□ 1.53
MSH6P52701 CTBP2-202ENST00000334808 2130 ntTSL 1 (best) BASIC24.59■■□□□ 1.53
MSH6P52701 AC011944.1-201ENST00000316148 1900 ntTSL 2 BASIC24.59■■□□□ 1.53
MSH6P52701 AD000671.2-201ENST00000589807 1925 ntAPPRIS P1 TSL 2 BASIC24.59■■□□□ 1.53
MSH6P52701 PAX4-204ENST00000463946 1613 ntTSL 1 (best) BASIC24.58■■□□□ 1.53
MSH6P52701 DMKN-209ENST00000429837 1447 ntAPPRIS ALT2 TSL 1 (best) BASIC24.58■■□□□ 1.53
MSH6P52701 LINC02415-201ENST00000508505 1315 ntTSL 1 (best) BASIC24.58■■□□□ 1.53
MSH6P52701 ZDHHC11-209ENST00000511539 1303 ntTSL 1 (best) BASIC24.58■■□□□ 1.53
MSH6P52701 ZDHHC11B-204ENST00000622126 1301 ntTSL 5 BASIC24.58■■□□□ 1.53
MSH6P52701 AP002414.1-201ENST00000391405 1147 ntBASIC24.58■■□□□ 1.53
MSH6P52701 OARD1-208ENST00000469104 704 ntTSL 2 BASIC24.58■■□□□ 1.53
MSH6P52701 CHRNA5-203ENST00000559554 1051 ntTSL 3 BASIC24.58■■□□□ 1.53
MSH6P52701 AL138781.1-202ENST00000563018 775 ntTSL 3 BASIC24.58■■□□□ 1.53
MSH6P52701 AC092115.3-201ENST00000575838 592 ntTSL 5 BASIC24.58■■□□□ 1.53
MSH6P52701 WNT1-202ENST00000613114 1278 ntTSL 5 BASIC24.58■■□□□ 1.53
MSH6P52701 OARD1-216ENST00000628419 1188 ntTSL 5 BASIC24.58■■□□□ 1.53
MSH6P52701 WNT10A-201ENST00000258411 2547 ntAPPRIS P1 TSL 1 (best) BASIC24.58■■□□□ 1.53
MSH6P52701 C15orf56-202ENST00000623360 2129 ntTSL 2 BASIC24.58■■□□□ 1.53
MSH6P52701 NOTCH2NL-204ENST00000579793 1954 ntAPPRIS ALT2 TSL 2 BASIC24.58■■□□□ 1.53
MSH6P52701 PKD1P6-201ENST00000343738 4769 ntBASIC24.58■■□□□ 1.53
MSH6P52701 DDX19B-207ENST00000563206 1765 ntTSL 5 BASIC24.58■■□□□ 1.53
MSH6P52701 ACP5-201ENST00000218758 1630 ntAPPRIS P1 TSL 1 (best) BASIC24.58■■□□□ 1.52
MSH6P52701 FAM50B-201ENST00000380272 1628 ntAPPRIS P1 TSL 1 (best) BASIC24.58■■□□□ 1.52
MSH6P52701 NKIRAS1-202ENST00000412028 1605 ntAPPRIS ALT1 TSL 5 BASIC24.58■■□□□ 1.52
MSH6P52701 PKD1L2-209ENST00000531391 1488 ntTSL 1 (best) BASIC24.58■■□□□ 1.52
MSH6P52701 ACBD4-204ENST00000431281 2026 ntTSL 5 BASIC24.57■■□□□ 1.52
MSH6P52701 HNRNPFP1-201ENST00000391730 1133 ntBASIC24.57■■□□□ 1.52
MSH6P52701 AL627223.1-201ENST00000416693 442 ntBASIC24.57■■□□□ 1.52
MSH6P52701 HRAS-204ENST00000417302 1233 ntTSL 5 BASIC24.57■■□□□ 1.52
MSH6P52701 HRAS-205ENST00000451590 1151 ntAPPRIS P1 TSL 2 BASIC24.57■■□□□ 1.52
MSH6P52701 AP000777.2-201ENST00000539897 501 ntTSL 4 BASIC24.57■■□□□ 1.52
MSH6P52701 ATP1B1-201ENST00000367815 1883 ntAPPRIS P1 TSL 1 (best) BASIC24.57■■□□□ 1.52
MSH6P52701 MED25-201ENST00000312865 2332 ntAPPRIS P1 TSL 1 (best) BASIC24.57■■□□□ 1.52
MSH6P52701 MEF2B-201ENST00000409224 1683 ntTSL 2 BASIC24.57■■□□□ 1.52
MSH6P52701 TMEM106C-202ENST00000429772 1515 ntAPPRIS P1 TSL 2 BASIC24.57■■□□□ 1.52
MSH6P52701 SIRT6-203ENST00000594279 1507 ntTSL 3 BASIC24.57■■□□□ 1.52
MSH6P52701 CDCA4-201ENST00000336219 2513 ntAPPRIS P1 TSL 1 (best) BASIC24.57■■□□□ 1.52
MSH6P52701 SLC22A1-203ENST00000457470 1452 ntTSL 5 BASIC24.57■■□□□ 1.52
MSH6P52701 SNX1-213ENST00000561026 1374 ntTSL 1 (best) BASIC24.57■■□□□ 1.52
MSH6P52701 FOXS1-201ENST00000375978 1319 ntAPPRIS P1 BASIC24.56■■□□□ 1.52
MSH6P52701 SIGIRR-203ENST00000431843 1720 ntAPPRIS P1 TSL 1 (best) BASIC24.56■■□□□ 1.52
MSH6P52701 MRPL43-201ENST00000299179 747 ntTSL 1 (best) BASIC24.56■■□□□ 1.52
MSH6P52701 LGALS7B-201ENST00000314980 483 ntAPPRIS P1 TSL 1 (best) BASIC24.56■■□□□ 1.52
MSH6P52701 MIR661-201ENST00000384842 89 ntBASIC24.56■■□□□ 1.52
MSH6P52701 AL732437.1-201ENST00000442008 595 ntTSL 4 BASIC24.56■■□□□ 1.52
MSH6P52701 SIGLEC30P-201ENST00000455569 941 ntBASIC24.56■■□□□ 1.52
MSH6P52701 IGLL5-201ENST00000526893 1050 ntAPPRIS P2 TSL 1 (best) BASIC24.56■■□□□ 1.52
MSH6P52701 IGLL5-202ENST00000531372 882 ntTSL 1 (best) BASIC24.56■■□□□ 1.52
MSH6P52701 JPH4-203ENST00000544177 1124 ntTSL 2 BASIC24.56■■□□□ 1.52
MSH6P52701 DUX4L17-201ENST00000557360 1267 ntBASIC24.56■■□□□ 1.52
MSH6P52701 ZNF710-AS1-201ENST00000558334 1168 ntTSL 1 (best) BASIC24.56■■□□□ 1.52
MSH6P52701 RN7SL204P-201ENST00000582831 262 ntBASIC24.56■■□□□ 1.52
MSH6P52701 TMEM220-AS1-206ENST00000583343 876 ntTSL 3 BASIC24.56■■□□□ 1.52
MSH6P52701 MED16-214ENST00000617672 554 ntTSL 5 BASIC24.56■■□□□ 1.52
MSH6P52701 RAB9A-203ENST00000618931 737 ntAPPRIS P1 TSL 2 BASIC24.56■■□□□ 1.52
MSH6P52701 RCAN3-211ENST00000630217 658 ntTSL 1 (best) BASIC24.56■■□□□ 1.52
MSH6P52701 ACD-201ENST00000219251 2052 ntAPPRIS P3 TSL 2 BASIC24.56■■□□□ 1.52
MSH6P52701 PLEKHA2-206ENST00000521746 2127 ntTSL 5 BASIC24.56■■□□□ 1.52
MSH6P52701 NMRK1-203ENST00000376811 2050 ntTSL 2 BASIC24.56■■□□□ 1.52
MSH6P52701 PAAF1-205ENST00000535604 1695 ntTSL 5 BASIC24.56■■□□□ 1.52
MSH6P52701 NLRP6-201ENST00000312165 2679 ntAPPRIS P3 TSL 1 (best) BASIC24.56■■□□□ 1.52
MSH6P52701 ARMC9-201ENST00000349938 2300 ntAPPRIS P1 TSL 1 (best) BASIC24.56■■□□□ 1.52
MSH6P52701 AMDHD1-201ENST00000266736 2260 ntAPPRIS P1 TSL 1 (best) BASIC24.55■■□□□ 1.52
MSH6P52701 EIF5A-201ENST00000336452 1256 ntTSL 1 (best) BASIC24.55■■□□□ 1.52
MSH6P52701 BAG1-202ENST00000379704 1128 ntAPPRIS ALT2 TSL 1 (best) BASIC24.55■■□□□ 1.52
MSH6P52701 BASP1P1-201ENST00000430708 665 ntBASIC24.55■■□□□ 1.52
MSH6P52701 ARPC4-203ENST00000433034 926 ntTSL 3 BASIC24.55■■□□□ 1.52
MSH6P52701 CCDC159-201ENST00000458408 1062 ntAPPRIS P1 TSL 5 BASIC24.55■■□□□ 1.52
MSH6P52701 AC106795.3-201ENST00000511650 547 ntTSL 4 BASIC24.55■■□□□ 1.52
MSH6P52701 GNB1-201ENST00000378609 3132 ntAPPRIS P1 TSL 1 (best) BASIC24.55■■□□□ 1.52
MSH6P52701 PCGF2-206ENST00000618941 1499 ntTSL 5 BASIC24.55■■□□□ 1.52
MSH6P52701 PAN3-201ENST00000380958 2833 ntAPPRIS P2 TSL 5 BASIC24.55■■□□□ 1.52
MSH6P52701 SHOX2-203ENST00000441443 3038 ntAPPRIS ALT2 TSL 5 BASIC24.55■■□□□ 1.52
MSH6P52701 DUSP26-203ENST00000523956 1373 ntAPPRIS P1 TSL 5 BASIC24.55■■□□□ 1.52
MSH6P52701 CDH5-204ENST00000563425 1932 ntTSL 5 BASIC24.55■■□□□ 1.52
MSH6P52701 METRNL-203ENST00000571814 1900 ntTSL 1 (best) BASIC24.55■■□□□ 1.52
MSH6P52701 TMEM86B-201ENST00000327042 1637 ntAPPRIS P1 TSL 1 (best) BASIC24.55■■□□□ 1.52
MSH6P52701 AL079301.1-201ENST00000424580 1633 ntTSL 2 BASIC24.55■■□□□ 1.52
MSH6P52701 PTGIR-201ENST00000291294 2107 ntAPPRIS P1 TSL 1 (best) BASIC24.55■■□□□ 1.52
MSH6P52701 AC003669.1-201ENST00000334569 611 ntBASIC24.54■■□□□ 1.52
MSH6P52701 LY6G6C-201ENST00000375819 992 ntAPPRIS P1 TSL 1 (best) BASIC24.54■■□□□ 1.52
MSH6P52701 COX5BP2-201ENST00000392354 334 ntBASIC24.54■■□□□ 1.52
MSH6P52701 PTCHD3P3-201ENST00000403073 906 ntBASIC24.54■■□□□ 1.52
MSH6P52701 CNN2P2-201ENST00000443536 909 ntBASIC24.54■■□□□ 1.52
MSH6P52701 CNN2P3-201ENST00000450201 906 ntBASIC24.54■■□□□ 1.52
MSH6P52701 AC103808.2-201ENST00000582755 594 ntTSL 4 BASIC24.54■■□□□ 1.52
MSH6P52701 AC010776.2-201ENST00000588946 1081 ntTSL 2 BASIC24.54■■□□□ 1.52
MSH6P52701 TUBB4A-209ENST00000598006 565 ntTSL 2 BASIC24.54■■□□□ 1.52
MSH6P52701 AL590235.2-202ENST00000602543 594 ntTSL 5 BASIC24.54■■□□□ 1.52
Retrieved 100 of 98,524 protein–RNA pairs in 32.1 ms