Protein–RNA interactions for Protein: Q96MF4

CCDC140, Coiled-coil domain-containing protein 140, humanhuman

Predictions only

Length 163 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC140Q96MF4 GOLGA2P7-201ENST00000316967 2525 ntTSL 2 BASIC13.86□□□□□ -0.19
CCDC140Q96MF4 RCAN3-209ENST00000616511 2527 ntTSL 1 (best) BASIC13.86□□□□□ -0.19
CCDC140Q96MF4 FKBP10-201ENST00000321562 2662 ntAPPRIS P1 TSL 1 (best) BASIC13.86□□□□□ -0.19
CCDC140Q96MF4 HCK-210ENST00000629881 1969 ntAPPRIS ALT2 TSL 2 BASIC13.86□□□□□ -0.19
CCDC140Q96MF4 KHDC1-201ENST00000257765 1134 ntAPPRIS P3 TSL 1 (best) BASIC13.86□□□□□ -0.19
CCDC140Q96MF4 BET1L-202ENST00000332865 533 ntTSL 5 BASIC13.86□□□□□ -0.19
CCDC140Q96MF4 NDUFA1-201ENST00000371437 766 ntAPPRIS P1 TSL 1 (best) BASIC13.86□□□□□ -0.19
CCDC140Q96MF4 PTGDS-202ENST00000371625 807 ntAPPRIS P1 TSL 1 (best) BASIC13.86□□□□□ -0.19
CCDC140Q96MF4 OARD1-201ENST00000373154 1129 ntTSL 1 (best) BASIC13.86□□□□□ -0.19
CCDC140Q96MF4 MADCAM1-203ENST00000382683 603 ntTSL 1 (best) BASIC13.86□□□□□ -0.19
CCDC140Q96MF4 NFU1-202ENST00000394305 1058 ntTSL 5 BASIC13.86□□□□□ -0.19
CCDC140Q96MF4 RNF216P1-205ENST00000406089 807 ntTSL 5 BASIC13.86□□□□□ -0.19
CCDC140Q96MF4 FOXP3-205ENST00000518685 1213 ntTSL 1 (best) BASIC13.86□□□□□ -0.19
CCDC140Q96MF4 GEMIN7-203ENST00000591607 848 ntAPPRIS P1 TSL 3 BASIC13.86□□□□□ -0.19
CCDC140Q96MF4 KHDC1-207ENST00000610435 1101 ntAPPRIS P3 TSL 5 BASIC13.86□□□□□ -0.19
CCDC140Q96MF4 AC116407.2-201ENST00000613639 860 ntBASIC13.86□□□□□ -0.19
CCDC140Q96MF4 MARK4-210ENST00000620044 2105 ntTSL 5 BASIC13.86□□□□□ -0.19
CCDC140Q96MF4 EML2-AS1-203ENST00000623430 886 ntTSL 1 (best) BASIC13.86□□□□□ -0.19
CCDC140Q96MF4 NEXN-AS1-201ENST00000421331 2292 ntTSL 2 BASIC13.86□□□□□ -0.19
CCDC140Q96MF4 GRIN3B-201ENST00000234389 3281 ntAPPRIS P1 TSL 1 (best) BASIC13.86□□□□□ -0.19
CCDC140Q96MF4 ZNF211-203ENST00000299871 2577 ntAPPRIS ALT2 TSL 3 BASIC13.86□□□□□ -0.19
CCDC140Q96MF4 BORCS6-201ENST00000389017 2575 ntAPPRIS P1 BASIC13.86□□□□□ -0.19
CCDC140Q96MF4 GPANK1-201ENST00000375893 1598 ntAPPRIS P1 TSL 5 BASIC13.86□□□□□ -0.19
CCDC140Q96MF4 GTF2H4-201ENST00000259895 1735 ntAPPRIS P1 TSL 1 (best) BASIC13.86□□□□□ -0.19
CCDC140Q96MF4 DICER1-AS1-204ENST00000554631 1709 ntTSL 2 BASIC13.86□□□□□ -0.19
CCDC140Q96MF4 NEU1-206ENST00000375631 2045 ntAPPRIS P1 TSL 1 (best) BASIC13.86□□□□□ -0.19
CCDC140Q96MF4 ZDHHC2-201ENST00000262096 6377 ntAPPRIS P1 TSL 1 (best) BASIC13.86□□□□□ -0.19
CCDC140Q96MF4 ZNF746-202ENST00000458143 3797 ntAPPRIS ALT2 TSL 2 BASIC13.86□□□□□ -0.19
CCDC140Q96MF4 IQSEC2-218ENST00000640694 5958 ntAPPRIS ALT2 TSL 5 BASIC13.86□□□□□ -0.19
CCDC140Q96MF4 UNKL-204ENST00000389221 5116 ntAPPRIS ALT2 TSL 5 BASIC13.86□□□□□ -0.19
CCDC140Q96MF4 CCDC74A-206ENST00000467992 1347 ntAPPRIS ALT2 TSL 1 (best) BASIC13.86□□□□□ -0.19
CCDC140Q96MF4 NDUFB9-206ENST00000522532 1319 ntTSL 2 BASIC13.86□□□□□ -0.19
CCDC140Q96MF4 AC002310.2-202ENST00000492040 1488 ntTSL 1 (best) BASIC13.86□□□□□ -0.19
CCDC140Q96MF4 MED29-202ENST00000594368 1471 ntTSL 2 BASIC13.86□□□□□ -0.19
CCDC140Q96MF4 LEXM-201ENST00000358193 1777 ntAPPRIS P3 TSL 1 (best) BASIC13.86□□□□□ -0.19
CCDC140Q96MF4 HOXA-AS3-205ENST00000524304 2063 ntTSL 2 BASIC13.86□□□□□ -0.19
CCDC140Q96MF4 RIN1-201ENST00000311320 2693 ntAPPRIS P1 TSL 1 (best) BASIC13.86□□□□□ -0.19
CCDC140Q96MF4 ZNF385B-204ENST00000410066 3288 ntAPPRIS P1 TSL 1 (best) BASIC13.86□□□□□ -0.19
CCDC140Q96MF4 IVNS1ABP-202ENST00000367498 4199 ntAPPRIS P1 TSL 1 (best) BASIC13.86□□□□□ -0.19
CCDC140Q96MF4 XXYLT1-201ENST00000310380 2727 ntAPPRIS P1 TSL 1 (best) BASIC13.85□□□□□ -0.19
CCDC140Q96MF4 APMAP-201ENST00000217456 2430 ntAPPRIS P1 TSL 1 (best) BASIC13.85□□□□□ -0.19
CCDC140Q96MF4 CNST-202ENST00000366512 2422 ntTSL 1 (best) BASIC13.85□□□□□ -0.19
CCDC140Q96MF4 SATB2-203ENST00000428695 2135 ntTSL 1 (best) BASIC13.85□□□□□ -0.19
CCDC140Q96MF4 ZNF487-202ENST00000437590 2111 ntTSL 2 BASIC13.85□□□□□ -0.19
CCDC140Q96MF4 AL109910.2-201ENST00000607733 1953 ntTSL 2 BASIC13.85□□□□□ -0.19
CCDC140Q96MF4 ESPN-216ENST00000636330 4731 ntAPPRIS ALT2 TSL 5 BASIC13.85□□□□□ -0.19
CCDC140Q96MF4 NR2C2-206ENST00000425241 2494 ntAPPRIS P1 TSL 2 BASIC13.85□□□□□ -0.19
CCDC140Q96MF4 GFY-201ENST00000576655 1876 ntAPPRIS P1 TSL 5 BASIC13.85□□□□□ -0.19
CCDC140Q96MF4 EIF3C-211ENST00000566866 2986 ntAPPRIS P1 TSL 1 (best) BASIC13.85□□□□□ -0.19
CCDC140Q96MF4 DVL2-209ENST00000575458 2659 ntAPPRIS ALT2 TSL 2 BASIC13.85□□□□□ -0.19
CCDC140Q96MF4 PRKAR2A-201ENST00000265563 6471 ntAPPRIS P1 TSL 1 (best) BASIC13.85□□□□□ -0.19
CCDC140Q96MF4 TMEM132A-201ENST00000005286 3480 ntAPPRIS P3 TSL 5 BASIC13.85□□□□□ -0.19
CCDC140Q96MF4 ACY1-206ENST00000476351 1409 ntTSL 3 BASIC13.85□□□□□ -0.19
CCDC140Q96MF4 LCN8-201ENST00000371688 867 ntAPPRIS P2 TSL 1 (best) BASIC13.85□□□□□ -0.19
CCDC140Q96MF4 MRPS24-203ENST00000418740 743 ntTSL 2 BASIC13.85□□□□□ -0.19
CCDC140Q96MF4 MOBP-204ENST00000420739 940 ntAPPRIS P4 TSL 5 BASIC13.85□□□□□ -0.19
CCDC140Q96MF4 PLPP5-202ENST00000422581 853 ntTSL 1 (best) BASIC13.85□□□□□ -0.19
CCDC140Q96MF4 BX890604.1-205ENST00000425492 856 ntTSL 1 (best) BASIC13.85□□□□□ -0.19
CCDC140Q96MF4 AC008610.1-201ENST00000504573 393 ntTSL 2 BASIC13.85□□□□□ -0.19
CCDC140Q96MF4 KRT18P35-201ENST00000510488 1269 ntBASIC13.85□□□□□ -0.19
CCDC140Q96MF4 LY6E-209ENST00000521003 740 ntAPPRIS P2 TSL 2 BASIC13.85□□□□□ -0.19
CCDC140Q96MF4 KRT8P26-201ENST00000534154 1276 ntBASIC13.85□□□□□ -0.19
CCDC140Q96MF4 MYL6-209ENST00000548293 753 ntAPPRIS P3 TSL 2 BASIC13.85□□□□□ -0.19
CCDC140Q96MF4 MIMT1-202ENST00000599641 1290 ntTSL 1 (best) BASIC13.85□□□□□ -0.19
CCDC140Q96MF4 AL592071.1-201ENST00000611956 408 ntBASIC13.85□□□□□ -0.19
CCDC140Q96MF4 CALM2-209ENST00000628793 1103 ntTSL 5 BASIC13.85□□□□□ -0.19
CCDC140Q96MF4 FBXL3-201ENST00000355619 3503 ntAPPRIS P1 TSL 1 (best) BASIC13.85□□□□□ -0.19
CCDC140Q96MF4 PODN-203ENST00000395871 2744 ntTSL 5 BASIC13.85□□□□□ -0.19
CCDC140Q96MF4 FAM13C-204ENST00000468840 2110 ntAPPRIS ALT2 TSL 2 BASIC13.85□□□□□ -0.19
CCDC140Q96MF4 ZNF454-202ENST00000519564 2142 ntAPPRIS P1 TSL 2 BASIC13.85□□□□□ -0.19
CCDC140Q96MF4 ZNF274-202ENST00000345813 2678 ntAPPRIS ALT2 TSL 1 (best) BASIC13.85□□□□□ -0.19
CCDC140Q96MF4 MUS81-215ENST00000533035 2180 ntTSL 5 BASIC13.85□□□□□ -0.19
CCDC140Q96MF4 AC013275.1-201ENST00000413602 2019 ntTSL 1 (best) BASIC13.85□□□□□ -0.19
CCDC140Q96MF4 FAM9A-202ENST00000543214 1544 ntAPPRIS P1 TSL 1 (best) BASIC13.85□□□□□ -0.19
CCDC140Q96MF4 SCARB1-203ENST00000415380 2731 ntTSL 2 BASIC13.84□□□□□ -0.19
CCDC140Q96MF4 AP005717.1-201ENST00000500705 1899 ntTSL 5 BASIC13.84□□□□□ -0.19
CCDC140Q96MF4 RPS6KA5-201ENST00000418736 2249 ntTSL 1 (best) BASIC13.84□□□□□ -0.19
CCDC140Q96MF4 IDS-202ENST00000370441 1399 ntTSL 1 (best) BASIC13.84□□□□□ -0.19
CCDC140Q96MF4 IMP4-201ENST00000259239 1740 ntAPPRIS P1 TSL 1 (best) BASIC13.84□□□□□ -0.19
CCDC140Q96MF4 PSRC1-204ENST00000369909 1742 ntAPPRIS P3 TSL 1 (best) BASIC13.84□□□□□ -0.19
CCDC140Q96MF4 AC009041.2-206ENST00000563863 1728 ntTSL 2 BASIC13.84□□□□□ -0.19
CCDC140Q96MF4 KLK5-201ENST00000336334 1563 ntAPPRIS P1 TSL 1 (best) BASIC13.84□□□□□ -0.19
CCDC140Q96MF4 AC010198.1-201ENST00000500076 1552 ntTSL 1 (best) BASIC13.84□□□□□ -0.19
CCDC140Q96MF4 PPP1R18-201ENST00000274853 4599 ntAPPRIS P1 TSL 1 (best) BASIC13.84□□□□□ -0.19
CCDC140Q96MF4 PPP1R18-205ENST00000615527 4597 ntAPPRIS P1 TSL 1 (best) BASIC13.84□□□□□ -0.19
CCDC140Q96MF4 SDCBP2-201ENST00000339987 1404 ntAPPRIS P1 TSL 1 (best) BASIC13.84□□□□□ -0.19
CCDC140Q96MF4 SLC27A5-207ENST00000601355 1987 ntAPPRIS ALT2 TSL 2 BASIC13.84□□□□□ -0.19
CCDC140Q96MF4 SIGIRR-201ENST00000332725 1639 ntAPPRIS P1 TSL 2 BASIC13.84□□□□□ -0.19
CCDC140Q96MF4 AURKAIP1-202ENST00000338338 1047 ntAPPRIS P1 TSL 1 (best) BASIC13.84□□□□□ -0.19
CCDC140Q96MF4 CXorf40A-202ENST00000393985 1148 ntAPPRIS P3 TSL 1 (best) BASIC13.84□□□□□ -0.19
CCDC140Q96MF4 SMIM19-202ENST00000416469 691 ntAPPRIS P1 TSL 1 (best) BASIC13.84□□□□□ -0.19
CCDC140Q96MF4 PCED1CP-201ENST00000419887 785 ntBASIC13.84□□□□□ -0.19
CCDC140Q96MF4 AC073111.4-202ENST00000486297 585 ntTSL 4 BASIC13.84□□□□□ -0.19
CCDC140Q96MF4 GUSBP12-201ENST00000513727 720 ntBASIC13.84□□□□□ -0.19
CCDC140Q96MF4 RMI2-205ENST00000576027 818 ntTSL 2 BASIC13.84□□□□□ -0.19
CCDC140Q96MF4 DBP-204ENST00000599385 709 ntTSL 3 BASIC13.84□□□□□ -0.19
CCDC140Q96MF4 AC124016.1-202ENST00000609575 619 ntTSL 2 BASIC13.84□□□□□ -0.19
CCDC140Q96MF4 AC010331.1-201ENST00000611423 582 ntBASIC13.84□□□□□ -0.19
CCDC140Q96MF4 AC116407.4-201ENST00000623319 1061 ntBASIC13.84□□□□□ -0.19
CCDC140Q96MF4 VPS72-207ENST00000640458 689 ntTSL 5 BASIC13.84□□□□□ -0.19
Retrieved 100 of 98,524 protein–RNA pairs in 47.7 ms