Protein–RNA interactions for Protein: P48431

SOX2, Transcription factor SOX-2, humanhuman

Predictions only

Length 317 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SOX2P48431 CCDC112-205ENST00000506442 2145 ntAPPRIS ALT2 TSL 2 BASIC15.79■□□□□ 0.12
SOX2P48431 HOXA-AS3-205ENST00000524304 2063 ntTSL 2 BASIC15.79■□□□□ 0.12
SOX2P48431 TNXB-204ENST00000479795 2742 ntTSL 1 (best) BASIC15.79■□□□□ 0.12
SOX2P48431 RNF170-205ENST00000526349 1338 ntTSL 1 (best) BASIC15.79■□□□□ 0.12
SOX2P48431 TMEM191C-214ENST00000621561 1337 ntAPPRIS P2 TSL 5 BASIC15.79■□□□□ 0.12
SOX2P48431 PCDHA1-203ENST00000504120 5263 ntAPPRIS P1 TSL 1 (best) BASIC15.79■□□□□ 0.12
SOX2P48431 GHR-201ENST00000230882 4560 ntAPPRIS P1 TSL 1 (best) BASIC15.79■□□□□ 0.12
SOX2P48431 GDF5-202ENST00000374372 2572 ntAPPRIS P1 TSL 1 (best) BASIC15.79■□□□□ 0.12
SOX2P48431 CDHR4-201ENST00000343366 1188 ntTSL 1 (best) BASIC15.79■□□□□ 0.12
SOX2P48431 CDKN1B-202ENST00000396340 897 ntTSL 3 BASIC15.79■□□□□ 0.12
SOX2P48431 AC007952.1-201ENST00000399087 553 ntTSL 1 (best) BASIC15.79■□□□□ 0.12
SOX2P48431 AC007952.2-202ENST00000399093 556 ntTSL 1 (best) BASIC15.79■□□□□ 0.12
SOX2P48431 AC073050.1-201ENST00000442316 462 ntTSL 3 BASIC15.79■□□□□ 0.12
SOX2P48431 DBNL-214ENST00000456905 1241 ntTSL 2 BASIC15.79■□□□□ 0.12
SOX2P48431 CD99P1-205ENST00000527459 561 ntBASIC15.79■□□□□ 0.12
SOX2P48431 GRAMD1B-209ENST00000533341 707 ntTSL 2 BASIC15.79■□□□□ 0.12
SOX2P48431 GCHFR-205ENST00000559932 695 ntTSL 2 BASIC15.79■□□□□ 0.12
SOX2P48431 IRX5-204ENST00000560154 879 ntTSL 5 BASIC15.79■□□□□ 0.12
SOX2P48431 IRX5-205ENST00000620085 881 ntTSL 1 (best) BASIC15.79■□□□□ 0.12
SOX2P48431 AC106017.2-202ENST00000628484 536 ntTSL 1 (best) BASIC15.79■□□□□ 0.12
SOX2P48431 TRIM11-202ENST00000366699 2511 ntTSL 2 BASIC15.79■□□□□ 0.12
SOX2P48431 PDE9A-206ENST00000380328 1875 ntTSL 1 (best) BASIC15.79■□□□□ 0.12
SOX2P48431 CLIP4-201ENST00000320081 4293 ntAPPRIS P1 TSL 1 (best) BASIC15.79■□□□□ 0.12
SOX2P48431 TIMM8A-201ENST00000372902 1664 ntAPPRIS P1 TSL 1 (best) BASIC15.79■□□□□ 0.12
SOX2P48431 SLC2A10-201ENST00000359271 4389 ntAPPRIS P1 TSL 1 (best) BASIC15.79■□□□□ 0.12
SOX2P48431 SAMD11-214ENST00000618323 2159 ntTSL 5 BASIC15.79■□□□□ 0.12
SOX2P48431 RIN1-201ENST00000311320 2693 ntAPPRIS P1 TSL 1 (best) BASIC15.79■□□□□ 0.12
SOX2P48431 MSLNL-201ENST00000442466 2109 ntAPPRIS P1 TSL 5 BASIC15.79■□□□□ 0.12
SOX2P48431 NEK10-202ENST00000341435 2638 ntTSL 2 BASIC15.79■□□□□ 0.12
SOX2P48431 RNH1-205ENST00000397615 2014 ntAPPRIS P1 TSL 1 (best) BASIC15.78■□□□□ 0.12
SOX2P48431 DAB2IP-205ENST00000408936 6784 ntAPPRIS ALT2 TSL 5 BASIC15.78■□□□□ 0.12
SOX2P48431 CXorf67-201ENST00000342995 1929 ntAPPRIS P1 BASIC15.78■□□□□ 0.12
SOX2P48431 OCIAD1-204ENST00000425583 1915 ntTSL 3 BASIC15.78■□□□□ 0.12
SOX2P48431 AL135905.2-201ENST00000584934 1404 ntBASIC15.78■□□□□ 0.12
SOX2P48431 EGR2-203ENST00000439032 2844 ntAPPRIS P1 TSL 1 (best) BASIC15.78■□□□□ 0.12
SOX2P48431 NAT9-201ENST00000357814 1875 ntTSL 1 (best) BASIC15.78■□□□□ 0.12
SOX2P48431 TTC8-202ENST00000345383 2329 ntTSL 5 BASIC15.78■□□□□ 0.12
SOX2P48431 AHR-201ENST00000242057 6276 ntAPPRIS P1 TSL 1 (best) BASIC15.78■□□□□ 0.12
SOX2P48431 NUMBL-207ENST00000598779 2249 ntAPPRIS ALT2 TSL 1 (best) BASIC15.78■□□□□ 0.12
SOX2P48431 EMC6-201ENST00000248378 653 ntAPPRIS P1 TSL 1 (best) BASIC15.78■□□□□ 0.12
SOX2P48431 GAMT-201ENST00000252288 1121 ntAPPRIS P1 TSL 1 (best) BASIC15.78■□□□□ 0.12
SOX2P48431 NUDT8-202ENST00000376693 728 ntAPPRIS ALT2 TSL 2 BASIC15.78■□□□□ 0.12
SOX2P48431 AVP-201ENST00000380293 619 ntAPPRIS P1 TSL 1 (best) BASIC15.78■□□□□ 0.12
SOX2P48431 INS-203ENST00000397262 639 ntAPPRIS P1 TSL 1 (best) BASIC15.78■□□□□ 0.12
SOX2P48431 NT5C3B-203ENST00000435506 975 ntAPPRIS P1 TSL 5 BASIC15.78■□□□□ 0.12
SOX2P48431 MAGI2-AS3-211ENST00000451809 707 ntTSL 3 BASIC15.78■□□□□ 0.12
SOX2P48431 AC091564.5-201ENST00000526456 820 ntTSL 4 BASIC15.78■□□□□ 0.12
SOX2P48431 MVB12A-204ENST00000528515 686 ntTSL 5 BASIC15.78■□□□□ 0.12
SOX2P48431 NDUFS3-212ENST00000534208 583 ntTSL 4 BASIC15.78■□□□□ 0.12
SOX2P48431 GRAP-204ENST00000573099 846 ntTSL 3 BASIC15.78■□□□□ 0.12
SOX2P48431 KANK3-205ENST00000610351 1191 ntTSL 5 BASIC15.78■□□□□ 0.12
SOX2P48431 GOLGA2P10-205ENST00000618267 983 ntTSL 1 (best) BASIC15.78■□□□□ 0.12
SOX2P48431 SMARCD3-202ENST00000356800 1669 ntTSL 1 (best) BASIC15.78■□□□□ 0.12
SOX2P48431 GAS7-203ENST00000432992 4970 ntAPPRIS P1 TSL 1 (best) BASIC15.78■□□□□ 0.12
SOX2P48431 CDS1-201ENST00000295887 4461 ntAPPRIS P1 TSL 1 (best) BASIC15.78■□□□□ 0.12
SOX2P48431 ERLEC1-201ENST00000185150 2433 ntAPPRIS P3 TSL 1 (best) BASIC15.78■□□□□ 0.12
SOX2P48431 TCTN1-229ENST00000614115 1965 ntTSL 5 BASIC15.78■□□□□ 0.12
SOX2P48431 FCER2-201ENST00000346664 1596 ntAPPRIS P2 TSL 1 (best) BASIC15.78■□□□□ 0.12
SOX2P48431 FCER2-205ENST00000597921 1560 ntAPPRIS P2 TSL 1 (best) BASIC15.78■□□□□ 0.12
SOX2P48431 FAM50B-202ENST00000380274 1932 ntAPPRIS P1 BASIC15.78■□□□□ 0.12
SOX2P48431 KIF13B-206ENST00000524189 8745 ntAPPRIS P1 TSL 1 (best) BASIC15.78■□□□□ 0.12
SOX2P48431 AL024508.2-201ENST00000607749 1894 ntBASIC15.78■□□□□ 0.12
SOX2P48431 MYBPH-201ENST00000255416 1805 ntAPPRIS P1 TSL 1 (best) BASIC15.78■□□□□ 0.12
SOX2P48431 AP001094.4-201ENST00000579008 2176 ntBASIC15.77■□□□□ 0.12
SOX2P48431 SYT8-202ENST00000381968 1424 ntAPPRIS P2 TSL 5 BASIC15.77■□□□□ 0.12
SOX2P48431 PODXL-202ENST00000378555 2105 ntAPPRIS P3 TSL 1 (best) BASIC15.77■□□□□ 0.12
SOX2P48431 EML2-203ENST00000536630 2791 ntAPPRIS ALT2 TSL 2 BASIC15.77■□□□□ 0.12
SOX2P48431 TBXAS1-210ENST00000458722 2057 ntTSL 2 BASIC15.77■□□□□ 0.12
SOX2P48431 AGO3-202ENST00000324350 1726 ntTSL 2 BASIC15.77■□□□□ 0.12
SOX2P48431 PRSS36-207ENST00000569305 2723 ntAPPRIS ALT2 TSL 1 (best) BASIC15.77■□□□□ 0.12
SOX2P48431 DENND3-201ENST00000262585 5438 ntAPPRIS P2 TSL 5 BASIC15.77■□□□□ 0.12
SOX2P48431 MAN2A2-216ENST00000559717 6704 ntAPPRIS P1 TSL 2 BASIC15.77■□□□□ 0.12
SOX2P48431 AC100803.2-201ENST00000562459 1963 ntBASIC15.77■□□□□ 0.12
SOX2P48431 DNM1-216ENST00000634267 2909 ntTSL 5 BASIC15.77■□□□□ 0.12
SOX2P48431 RECQL4-210ENST00000621189 3896 ntTSL 1 (best) BASIC15.77■□□□□ 0.12
SOX2P48431 CKMT1A-202ENST00000413453 1911 ntAPPRIS P1 TSL 1 (best) BASIC15.77■□□□□ 0.12
SOX2P48431 MRPL54-201ENST00000330133 626 ntAPPRIS P1 TSL 1 (best) BASIC15.77■□□□□ 0.12
SOX2P48431 SFXN1-203ENST00000502393 637 ntTSL 2 BASIC15.77■□□□□ 0.12
SOX2P48431 TGIF1-222ENST00000577543 729 ntTSL 3 BASIC15.77■□□□□ 0.12
SOX2P48431 AC008763.3-201ENST00000597959 777 ntAPPRIS P1 TSL 4 BASIC15.77■□□□□ 0.12
SOX2P48431 TPSB2-201ENST00000606293 1165 ntAPPRIS ALT2 TSL 1 (best) BASIC15.77■□□□□ 0.12
SOX2P48431 LINC00683-201ENST00000578803 2221 ntTSL 2 BASIC15.77■□□□□ 0.12
SOX2P48431 AC010198.1-201ENST00000500076 1552 ntTSL 1 (best) BASIC15.77■□□□□ 0.11
SOX2P48431 DDHD1-202ENST00000357758 5603 ntAPPRIS P3 TSL 1 (best) BASIC15.77■□□□□ 0.11
SOX2P48431 PPM1M-202ENST00000323588 2193 ntAPPRIS P1 TSL 1 (best) BASIC15.77■□□□□ 0.11
SOX2P48431 FAM174B-201ENST00000327355 2792 ntAPPRIS P2 TSL 1 (best) BASIC15.77■□□□□ 0.11
SOX2P48431 PHRF1-201ENST00000264555 5523 ntAPPRIS ALT2 TSL 1 (best) BASIC15.77■□□□□ 0.11
SOX2P48431 PNKP-224ENST00000631020 1545 ntTSL 5 BASIC15.77■□□□□ 0.11
SOX2P48431 NEIL1-221ENST00000569035 1797 ntAPPRIS P1 TSL 1 (best) BASIC15.77■□□□□ 0.11
SOX2P48431 BHLHE41-201ENST00000242728 3837 ntAPPRIS P1 TSL 1 (best) BASIC15.77■□□□□ 0.11
SOX2P48431 MAST3-201ENST00000262811 5896 ntAPPRIS P1 TSL 1 (best) BASIC15.77■□□□□ 0.11
SOX2P48431 AC008969.1-201ENST00000550135 6438 ntTSL 2 BASIC15.77■□□□□ 0.11
SOX2P48431 PRRT2-216ENST00000637403 2033 ntTSL 5 BASIC15.77■□□□□ 0.11
SOX2P48431 PSRC1-204ENST00000369909 1742 ntAPPRIS P3 TSL 1 (best) BASIC15.77■□□□□ 0.11
SOX2P48431 SAMD11-202ENST00000342066 2551 ntAPPRIS P2 TSL 5 BASIC15.77■□□□□ 0.11
SOX2P48431 SAMD11-217ENST00000622503 2557 ntAPPRIS ALT2 TSL 5 BASIC15.77■□□□□ 0.11
SOX2P48431 AL445686.2-201ENST00000577528 1445 ntTSL 3 BASIC15.77■□□□□ 0.11
SOX2P48431 EIF4E1B-201ENST00000318682 1974 ntAPPRIS P1 TSL 5 BASIC15.76■□□□□ 0.11
SOX2P48431 TMEM216-203ENST00000515837 1958 ntAPPRIS P2 TSL 2 BASIC15.76■□□□□ 0.11
SOX2P48431 LRFN3-201ENST00000246529 2513 ntAPPRIS P1 TSL 1 (best) BASIC15.76■□□□□ 0.11
Retrieved 100 of 98,524 protein–RNA pairs in 25 ms