Protein–RNA interactions for Protein: P12109

COL6A1, Collagen alpha-1(VI) chain, humanhuman

Predictions only

Length 1,028 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL6A1P12109 THAP7-202ENST00000399133 1144 ntAPPRIS P1 TSL 2 BASIC19.68■□□□□ 0.74
COL6A1P12109 AL020989.1-201ENST00000422979 469 ntBASIC19.68■□□□□ 0.74
COL6A1P12109 ARHGAP11B-201ENST00000428041 1017 ntAPPRIS P1 TSL 1 (best) BASIC19.68■□□□□ 0.74
COL6A1P12109 PNPO-202ENST00000434554 1196 ntTSL 2 BASIC19.68■□□□□ 0.74
COL6A1P12109 WDR25-203ENST00000542471 1214 ntTSL 1 (best) BASIC19.68■□□□□ 0.74
COL6A1P12109 KRT19P2-202ENST00000557173 1012 ntBASIC19.68■□□□□ 0.74
COL6A1P12109 AC096734.2-201ENST00000562054 433 ntBASIC19.68■□□□□ 0.74
COL6A1P12109 RAMP2-205ENST00000589683 858 ntTSL 3 BASIC19.68■□□□□ 0.74
COL6A1P12109 AC005498.2-205ENST00000593218 784 ntBASIC19.68■□□□□ 0.74
COL6A1P12109 AQP6-205ENST00000618286 829 ntTSL 5 BASIC19.68■□□□□ 0.74
COL6A1P12109 CITED2-204ENST00000618718 901 ntTSL 2 BASIC19.68■□□□□ 0.74
COL6A1P12109 MRM2-203ENST00000440306 1570 ntAPPRIS P1 TSL 5 BASIC19.68■□□□□ 0.74
COL6A1P12109 SHOX2-203ENST00000441443 3038 ntAPPRIS ALT2 TSL 5 BASIC19.68■□□□□ 0.74
COL6A1P12109 GNB1-201ENST00000378609 3132 ntAPPRIS P1 TSL 1 (best) BASIC19.68■□□□□ 0.74
COL6A1P12109 KRT85-202ENST00000544265 1387 ntTSL 2 BASIC19.68■□□□□ 0.74
COL6A1P12109 RBM6-204ENST00000422955 2324 ntTSL 2 BASIC19.68■□□□□ 0.74
COL6A1P12109 ABI3-202ENST00000419580 1718 ntAPPRIS P1 TSL 5 BASIC19.68■□□□□ 0.74
COL6A1P12109 NABP2-201ENST00000267023 1417 ntAPPRIS P1 TSL 1 (best) BASIC19.68■□□□□ 0.74
COL6A1P12109 AP003717.1-202ENST00000537019 1412 ntTSL 5 BASIC19.68■□□□□ 0.74
COL6A1P12109 PLEKHA2-206ENST00000521746 2127 ntTSL 5 BASIC19.67■□□□□ 0.74
COL6A1P12109 SUSD1-204ENST00000374270 3124 ntAPPRIS P3 TSL 1 (best) BASIC19.67■□□□□ 0.74
COL6A1P12109 MID1IP1-202ENST00000378474 1889 ntAPPRIS P1 TSL 1 (best) BASIC19.67■□□□□ 0.74
COL6A1P12109 ARSE-201ENST00000381134 1853 ntAPPRIS P1 TSL 1 (best) BASIC19.67■□□□□ 0.74
COL6A1P12109 SH3BP5-203ENST00000408919 1880 ntTSL 1 (best) BASIC19.67■□□□□ 0.74
COL6A1P12109 AL049812.1-201ENST00000432563 2267 ntBASIC19.67■□□□□ 0.74
COL6A1P12109 TEKT5-201ENST00000283025 1612 ntAPPRIS P1 TSL 1 (best) BASIC19.67■□□□□ 0.74
COL6A1P12109 HIC1-207ENST00000619757 6711 ntTSL 1 (best) BASIC19.67■□□□□ 0.74
COL6A1P12109 C22orf39-201ENST00000333059 1221 ntAPPRIS P1 TSL 1 (best) BASIC19.67■□□□□ 0.74
COL6A1P12109 SIVA1-202ENST00000347067 550 ntTSL 1 (best) BASIC19.67■□□□□ 0.74
COL6A1P12109 PRUNE2-202ENST00000376713 1069 ntTSL 5 BASIC19.67■□□□□ 0.74
COL6A1P12109 AP1S3-203ENST00000396654 830 ntAPPRIS P2 TSL 2 BASIC19.67■□□□□ 0.74
COL6A1P12109 AC103564.2-201ENST00000432853 1299 ntBASIC19.67■□□□□ 0.74
COL6A1P12109 FAM58CP-201ENST00000435741 640 ntBASIC19.67■□□□□ 0.74
COL6A1P12109 NDUFAF5-203ENST00000463598 991 ntTSL 1 (best) BASIC19.67■□□□□ 0.74
COL6A1P12109 TAF8-206ENST00000472818 719 ntTSL 2 BASIC19.67■□□□□ 0.74
COL6A1P12109 LINC01481-203ENST00000549651 883 ntTSL 2 BASIC19.67■□□□□ 0.74
COL6A1P12109 AC004835.2-201ENST00000603762 682 ntBASIC19.67■□□□□ 0.74
COL6A1P12109 AC010654.1-201ENST00000615722 808 ntBASIC19.67■□□□□ 0.74
COL6A1P12109 AL359644.1-202ENST00000637541 571 ntTSL 3 BASIC19.67■□□□□ 0.74
COL6A1P12109 PPP1R12C-202ENST00000435544 2363 ntTSL 2 BASIC19.67■□□□□ 0.74
COL6A1P12109 ESM1-201ENST00000381403 1326 ntTSL 1 (best) BASIC19.67■□□□□ 0.74
COL6A1P12109 BICD1-205ENST00000550207 1328 ntTSL 3 BASIC19.67■□□□□ 0.74
COL6A1P12109 IDH3G-202ENST00000370092 1712 ntTSL 5 BASIC19.67■□□□□ 0.74
COL6A1P12109 PYCR1-217ENST00000629768 1740 ntTSL 5 BASIC19.67■□□□□ 0.74
COL6A1P12109 TUBA4B-203ENST00000490341 1380 ntAPPRIS P1 TSL 2 BASIC19.67■□□□□ 0.74
COL6A1P12109 KLK5-203ENST00000593428 1365 ntAPPRIS P1 TSL 1 (best) BASIC19.67■□□□□ 0.74
COL6A1P12109 AMHR2-202ENST00000379791 1437 ntTSL 1 (best) BASIC19.67■□□□□ 0.74
COL6A1P12109 NCF1C-201ENST00000438382 1427 ntBASIC19.67■□□□□ 0.74
COL6A1P12109 LINC01105-206ENST00000456327 1434 ntTSL 5 BASIC19.67■□□□□ 0.74
COL6A1P12109 INHA-201ENST00000243786 1468 ntAPPRIS P1 TSL 1 (best) BASIC19.67■□□□□ 0.74
COL6A1P12109 PC-214ENST00000628663 1470 ntTSL 5 BASIC19.67■□□□□ 0.74
COL6A1P12109 COBL-210ENST00000632460 1941 ntTSL 5 BASIC19.66■□□□□ 0.74
COL6A1P12109 TSEN34-202ENST00000396383 1548 ntAPPRIS P1 TSL 1 (best) BASIC19.66■□□□□ 0.74
COL6A1P12109 RAI14-201ENST00000265109 5092 ntAPPRIS P1 TSL 1 (best) BASIC19.66■□□□□ 0.74
COL6A1P12109 EGR3-204ENST00000522910 1553 ntAPPRIS ALT1 TSL 2 BASIC19.66■□□□□ 0.74
COL6A1P12109 MON1A-202ENST00000417270 2527 ntAPPRIS ALT2 TSL 5 BASIC19.66■□□□□ 0.74
COL6A1P12109 BDKRB2-201ENST00000539359 1600 ntTSL 2 BASIC19.66■□□□□ 0.74
COL6A1P12109 SLC31A2-201ENST00000259392 1785 ntAPPRIS P1 TSL 1 (best) BASIC19.66■□□□□ 0.74
COL6A1P12109 CHEK2-202ENST00000348295 1771 ntTSL 5 BASIC19.66■□□□□ 0.74
COL6A1P12109 TRAPPC3-203ENST00000373163 951 ntTSL 3 BASIC19.66■□□□□ 0.74
COL6A1P12109 LYPLA2-204ENST00000374505 907 ntTSL 3 BASIC19.66■□□□□ 0.74
COL6A1P12109 NFKBIB-202ENST00000392079 991 ntTSL 5 BASIC19.66■□□□□ 0.74
COL6A1P12109 AC109309.1-201ENST00000418995 435 ntTSL 3 BASIC19.66■□□□□ 0.74
COL6A1P12109 RHOQP3-201ENST00000437982 621 ntBASIC19.66■□□□□ 0.74
COL6A1P12109 POLD4-207ENST00000531239 584 ntTSL 2 BASIC19.66■□□□□ 0.74
COL6A1P12109 RIN3-211ENST00000557762 517 ntTSL 3 BASIC19.66■□□□□ 0.74
COL6A1P12109 AC004449.1-201ENST00000564240 433 ntBASIC19.66■□□□□ 0.74
COL6A1P12109 OPCML-202ENST00000374778 1302 ntTSL 1 (best) BASIC19.66■□□□□ 0.74
COL6A1P12109 C2orf27B-201ENST00000623129 1325 ntTSL 1 (best) BASIC19.66■□□□□ 0.74
COL6A1P12109 ESPN-205ENST00000461727 1869 ntTSL 1 (best) BASIC19.66■□□□□ 0.74
COL6A1P12109 CWH43-201ENST00000226432 2472 ntAPPRIS P1 TSL 1 (best) BASIC19.66■□□□□ 0.74
COL6A1P12109 UQCC3-201ENST00000377953 1947 ntAPPRIS P1 TSL 1 (best) BASIC19.66■□□□□ 0.74
COL6A1P12109 TRMT2A-203ENST00000404751 2498 ntAPPRIS ALT2 TSL 2 BASIC19.66■□□□□ 0.74
COL6A1P12109 C16orf59-210ENST00000569496 1911 ntAPPRIS ALT2 TSL 5 BASIC19.66■□□□□ 0.74
COL6A1P12109 FAR2P2-204ENST00000424873 2070 ntTSL 2 BASIC19.66■□□□□ 0.74
COL6A1P12109 SAMD11-213ENST00000618181 2179 ntAPPRIS ALT2 TSL 5 BASIC19.66■□□□□ 0.74
COL6A1P12109 AC242426.3-201ENST00000440377 1571 ntTSL 2 BASIC19.66■□□□□ 0.74
COL6A1P12109 PAX4-204ENST00000463946 1613 ntTSL 1 (best) BASIC19.65■□□□□ 0.74
COL6A1P12109 C18orf25-204ENST00000615553 2329 ntTSL 5 BASIC19.65■□□□□ 0.74
COL6A1P12109 DMRT2-205ENST00000382255 2367 ntTSL 1 (best) BASIC19.65■□□□□ 0.74
COL6A1P12109 NRXN2-201ENST00000265459 6621 ntAPPRIS P3 TSL 5 BASIC19.65■□□□□ 0.74
COL6A1P12109 MPZL1-201ENST00000359523 5010 ntAPPRIS P1 TSL 1 (best) BASIC19.65■□□□□ 0.74
COL6A1P12109 PAIP1-201ENST00000306846 2782 ntTSL 1 (best) BASIC19.65■□□□□ 0.74
COL6A1P12109 METTL21C-201ENST00000267273 1088 ntAPPRIS P1 TSL 1 (best) BASIC19.65■□□□□ 0.74
COL6A1P12109 LCN2-203ENST00000373017 848 ntAPPRIS P2 TSL 5 BASIC19.65■□□□□ 0.74
COL6A1P12109 TIMM17B-202ENST00000396779 1099 ntTSL 5 BASIC19.65■□□□□ 0.74
COL6A1P12109 PIK3CD-AS2-201ENST00000415330 939 ntTSL 5 BASIC19.65■□□□□ 0.74
COL6A1P12109 HLA-J-202ENST00000469281 1241 ntBASIC19.65■□□□□ 0.74
COL6A1P12109 TMEM161B-AS1-202ENST00000501715 1101 ntTSL 1 (best) BASIC19.65■□□□□ 0.74
COL6A1P12109 SMN2-210ENST00000511812 867 ntTSL 2 BASIC19.65■□□□□ 0.74
COL6A1P12109 AC064807.1-203ENST00000520357 575 ntTSL 5 BASIC19.65■□□□□ 0.74
COL6A1P12109 NDUFS7-216ENST00000546283 1060 ntTSL 2 BASIC19.65■□□□□ 0.74
COL6A1P12109 CD63-210ENST00000550776 870 ntTSL 5 BASIC19.65■□□□□ 0.74
COL6A1P12109 MIR4745-201ENST00000577608 62 ntBASIC19.65■□□□□ 0.74
COL6A1P12109 AC004408.1-201ENST00000579256 573 ntTSL 4 BASIC19.65■□□□□ 0.74
COL6A1P12109 LCN8-205ENST00000612714 638 ntAPPRIS ALT2 TSL 1 (best) BASIC19.65■□□□□ 0.74
COL6A1P12109 BCAR1-209ENST00000546196 1340 ntBASIC19.65■□□□□ 0.74
COL6A1P12109 C14orf79-202ENST00000547315 2370 ntAPPRIS P2 TSL 1 (best) BASIC19.65■□□□□ 0.74
COL6A1P12109 EFHD2-201ENST00000375980 2419 ntAPPRIS P1 TSL 1 (best) BASIC19.65■□□□□ 0.74
COL6A1P12109 RAB7A-203ENST00000482525 1589 ntTSL 1 (best) BASIC19.65■□□□□ 0.74
Retrieved 100 of 98,524 protein–RNA pairs in 24.3 ms