Protein–RNA interactions for Protein: O75533

SF3B1, Splicing factor 3B subunit 1, humanhuman

Known RBP eCLIP

Length 1,304 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SF3B1O75533 DAZAP2-201ENST00000412716 2598 ntAPPRIS P1 TSL 1 (best) BASIC21.27■■□□□ 11e-6■■■■■ 123.5
SF3B1O75533 ST3GAL3-239ENST00000545417 1667 ntTSL 5 BASIC21.01■□□□□ 0.952e-6■■■■■ 123.5
SF3B1O75533 ST3GAL3-225ENST00000489897 998 ntTSL 520.94■□□□□ 0.942e-6■■■■■ 123.5
SF3B1O75533 ST3GAL3-205ENST00000347631 1324 ntTSL 5 BASIC20.78■□□□□ 0.922e-6■■■■■ 123.5
SF3B1O75533 ST3GAL3-219ENST00000372374 2170 ntTSL 5 BASIC20.38■□□□□ 0.852e-6■■■■■ 123.5
SF3B1O75533 ST3GAL3-204ENST00000335430 1805 ntTSL 5 BASIC20.28■□□□□ 0.842e-6■■■■■ 123.5
SF3B1O75533 ST3GAL3-230ENST00000530154 1670 ntTSL 219.7■□□□□ 0.742e-6■■■■■ 123.5
SF3B1O75533 ST3GAL3-206ENST00000351035 2377 ntTSL 5 BASIC19.51■□□□□ 0.712e-6■■■■■ 123.5
SF3B1O75533 ST3GAL3-201ENST00000262915 2470 ntTSL 5 BASIC19.21■□□□□ 0.672e-6■■■■■ 123.5
SF3B1O75533 SLK-202ENST00000369755 7766 ntAPPRIS P1 TSL 1 (best) BASIC17.06■□□□□ 0.322e-10■■■■■ 123.5
SF3B1O75533 SLK-201ENST00000335753 7673 ntTSL 1 (best) BASIC16.47■□□□□ 0.232e-10■■■■■ 123.5
SF3B1O75533 ST3GAL3-209ENST00000361400 2195 ntTSL 1 (best) BASIC15.73■□□□□ 0.112e-6■■■■■ 123.5
SF3B1O75533 ST3GAL3-208ENST00000361392 2243 ntAPPRIS P1 TSL 1 (best) BASIC15.42■□□□□ 0.062e-6■■■■■ 123.5
SF3B1O75533 ST3GAL3-202ENST00000330208 1479 ntTSL 5 BASIC13.89□□□□□ -0.192e-6■■■■■ 123.5
SF3B1O75533 DAZAP2-215ENST00000604900 1045 ntTSL 3 BASIC12.2□□□□□ -0.461e-6■■■■■ 123.5
SF3B1O75533 DAZAP2-203ENST00000436900 1811 ntTSL 512.19□□□□□ -0.461e-6■■■■■ 123.5
SF3B1O75533 DAZAP2-205ENST00000449723 2098 ntTSL 5 BASIC11.85□□□□□ -0.511e-6■■■■■ 123.5
SF3B1O75533 ST3GAL3-210ENST00000361746 1335 ntTSL 1 (best) BASIC11.69□□□□□ -0.542e-6■■■■■ 123.5
SF3B1O75533 ST3GAL3-217ENST00000372369 1038 ntTSL 1 (best) BASIC11.45□□□□□ -0.582e-6■■■■■ 123.5
SF3B1O75533 ST3GAL3-215ENST00000372367 644 ntTSL 1 (best) BASIC11.17□□□□□ -0.622e-6■■■■■ 123.5
SF3B1O75533 ST3GAL3-229ENST00000528371 599 ntTSL 1 (best) BASIC11.17□□□□□ -0.622e-6■■■■■ 123.5
SF3B1O75533 DAZAP2-214ENST00000552459 3664 ntTSL 211.15□□□□□ -0.621e-6■■■■■ 123.5
SF3B1O75533 ST3GAL3-231ENST00000530581 893 ntTSL 1 (best)10.88□□□□□ -0.672e-6■■■■■ 123.5
SF3B1O75533 ST3GAL3-203ENST00000332628 1035 ntTSL 1 (best) BASIC10.81□□□□□ -0.682e-6■■■■■ 123.5
SF3B1O75533 ST3GAL3-216ENST00000372368 1290 ntTSL 1 (best) BASIC10.42□□□□□ -0.742e-6■■■■■ 123.5
SF3B1O75533 ST3GAL3-234ENST00000531993 786 ntTSL 1 (best) BASIC10.35□□□□□ -0.752e-6■■■■■ 123.5
SF3B1O75533 ST3GAL3-214ENST00000372366 670 ntTSL 1 (best) BASIC10.2□□□□□ -0.782e-6■■■■■ 123.5
SF3B1O75533 ST3GAL3-218ENST00000372372 1242 ntTSL 1 (best) BASIC10.07□□□□□ -0.82e-6■■■■■ 123.5
SF3B1O75533 ST3GAL3-238ENST00000533997 1007 ntTSL 1 (best)10.07□□□□□ -0.82e-6■■■■■ 123.5
SF3B1O75533 ST3GAL3-236ENST00000533212 781 ntTSL 1 (best)10□□□□□ -0.812e-6■■■■■ 123.5
SF3B1O75533 ST3GAL3-222ENST00000469715 1160 ntTSL 1 (best)10□□□□□ -0.812e-6■■■■■ 123.5
SF3B1O75533 ST3GAL3-227ENST00000490541 976 ntTSL 1 (best)10□□□□□ -0.812e-6■■■■■ 123.5
SF3B1O75533 ST3GAL3-211ENST00000361812 513 ntTSL 1 (best) BASIC9.87□□□□□ -0.832e-6■■■■■ 123.5
SF3B1O75533 BAIAP2L1-204ENST00000479789 521 ntTSL 39.43□□□□□ -0.92e-6■■■■■ 123.5
SF3B1O75533 ST3GAL3-237ENST00000533933 834 ntTSL 1 (best) BASIC9.03□□□□□ -0.962e-6■■■■■ 123.5
SF3B1O75533 ST3GAL3-213ENST00000372365 673 ntTSL 1 (best) BASIC8.59□□□□□ -1.032e-6■■■■■ 123.5
SF3B1O75533 DAZAP2-202ENST00000425012 1117 ntTSL 2 BASIC8.26□□□□□ -1.091e-6■■■■■ 123.5
SF3B1O75533 ST3GAL3-232ENST00000531451 420 ntTSL 1 (best) BASIC7.45□□□□□ -1.222e-6■■■■■ 123.5
SF3B1O75533 ST3GAL3-212ENST00000372362 468 ntTSL 1 (best) BASIC7.45□□□□□ -1.222e-6■■■■■ 123.5
SF3B1O75533 ST3GAL3-233ENST00000531816 344 ntTSL 1 (best) BASIC6.12□□□□□ -1.432e-6■■■■■ 123.5
SF3B1O75533 TK1-206ENST00000592126 631 ntTSL 320.97■□□□□ 0.951e-6■■■■■ 123.5
SF3B1O75533 TK1-205ENST00000590862 642 ntTSL 3 BASIC19.71■□□□□ 0.751e-6■■■■■ 123.5
SF3B1O75533 TK1-202ENST00000586613 631 ntTSL 318.75■□□□□ 0.591e-6■■■■■ 123.5
SF3B1O75533 TK1-204ENST00000590430 683 ntTSL 3 BASIC18.46■□□□□ 0.551e-6■■■■■ 123.5
SF3B1O75533 TK1-203ENST00000588734 1681 ntTSL 2 BASIC16.74■□□□□ 0.271e-6■■■■■ 123.5
SF3B1O75533 TK1-201ENST00000301634 1628 ntAPPRIS P1 TSL 1 (best) BASIC16.16■□□□□ 0.181e-6■■■■■ 123.5
SF3B1O75533 UMAD1-204ENST00000482067 569 ntTSL 5 BASIC2.53□□□□□ -22e-7■■■■■ 123.4
SF3B1O75533 IDH3G-202ENST00000370092 1712 ntTSL 5 BASIC19.55■□□□□ 0.722e-8■■■■■ 123.3
SF3B1O75533 IDH3G-201ENST00000217901 1485 ntAPPRIS P1 TSL 1 (best) BASIC19.35■□□□□ 0.692e-8■■■■■ 123.3
SF3B1O75533 IDH3G-206ENST00000444450 888 ntTSL 518.68■□□□□ 0.582e-8■■■■■ 123.3
SF3B1O75533 IDH3G-208ENST00000461215 757 ntTSL 517.27■□□□□ 0.362e-8■■■■■ 123.3
SF3B1O75533 IDH3G-212ENST00000619865 1339 ntTSL 5 BASIC17.24■□□□□ 0.352e-8■■■■■ 123.3
SF3B1O75533 IDH3G-204ENST00000427365 1526 ntTSL 5 BASIC17.2■□□□□ 0.342e-8■■■■■ 123.3
SF3B1O75533 IDH3G-211ENST00000497043 851 ntTSL 517.16■□□□□ 0.342e-8■■■■■ 123.3
SF3B1O75533 IDH3G-203ENST00000370093 1662 ntTSL 2 BASIC16.99■□□□□ 0.312e-8■■■■■ 123.3
SF3B1O75533 IDH3G-210ENST00000495356 756 ntTSL 216.66■□□□□ 0.262e-8■■■■■ 123.3
SF3B1O75533 BAHCC1-206ENST00000584436 10801 ntAPPRIS P2 TSL 5 BASIC12.03□□□□□ -0.481e-6■■■■■ 123.3
SF3B1O75533 RNF121-208ENST00000526903 578 ntTSL 513.33□□□□□ -0.282e-7■■■■■ 123.3
SF3B1O75533 MROH1-208ENST00000532255 3905 ntTSL 211.62□□□□□ -0.554e-6■■■■■ 123.2
SF3B1O75533 TXNRD2-214ENST00000491939 2238 ntTSL 1 (best) BASIC16.94■□□□□ 0.32e-6■■■■■ 123.1
SF3B1O75533 SOCS2-AS1-202ENST00000500986 1655 ntTSL 2 BASIC18.33■□□□□ 0.532e-6■■■■■ 123.1
SF3B1O75533 TPP1-203ENST00000436873 560 ntTSL 416.66■□□□□ 0.262e-6■■■■■ 123.1
SF3B1O75533 TPP1-202ENST00000428886 841 ntTSL 213.66□□□□□ -0.222e-6■■■■■ 123.1
SF3B1O75533 WWP2-218ENST00000569620 738 ntTSL 512.83□□□□□ -0.362e-6■■■■■ 123.1
SF3B1O75533 SOCS2-AS1-201ENST00000499137 3325 ntTSL 1 (best) BASIC12.81□□□□□ -0.362e-6■■■■■ 123.1
SF3B1O75533 TPP1-216ENST00000534644 636 ntTSL 410.84□□□□□ -0.672e-6■■■■■ 123.1
SF3B1O75533 TPP1-201ENST00000299427 3536 ntAPPRIS P1 TSL 1 (best) BASIC10.43□□□□□ -0.742e-6■■■■■ 123.1
SF3B1O75533 TPP1-215ENST00000533371 3536 ntTSL 1 (best) BASIC10.37□□□□□ -0.752e-6■■■■■ 123.1
SF3B1O75533 TPP1-208ENST00000528571 561 ntTSL 48.25□□□□□ -1.092e-6■■■■■ 123.1
SF3B1O75533 U2SURP-209ENST00000480029 2855 ntTSL 22.59□□□□□ -1.993e-6■■■■■ 123.1
SF3B1O75533 CHD2-205ENST00000625662 5127 ntTSL 512.38□□□□□ -0.435e-7■■■■■ 123
SF3B1O75533 FLJ46284-201ENST00000504861 3421 ntTSL 2 BASIC4.43□□□□□ -1.75e-8■■■■■ 122.9
SF3B1O75533 PKMYT1-211ENST00000573944 1891 ntAPPRIS P1 TSL 5 BASIC24.78■■□□□ 1.561e-6■■■■■ 122.9
SF3B1O75533 PKMYT1-213ENST00000574385 1892 ntAPPRIS P1 TSL 2 BASIC21.67■■□□□ 1.061e-6■■■■■ 122.9
SF3B1O75533 PKMYT1-216ENST00000574730 1806 ntTSL 2 BASIC21.67■■□□□ 1.061e-6■■■■■ 122.9
SF3B1O75533 PKMYT1-204ENST00000440027 2061 ntTSL 2 BASIC21.29■■□□□ 11e-6■■■■■ 122.9
SF3B1O75533 PKMYT1-201ENST00000262300 2171 ntTSL 1 (best) BASIC20.91■□□□□ 0.941e-6■■■■■ 122.9
SF3B1O75533 CMIP-203ENST00000539778 3937 ntTSL 1 (best) BASIC12.51□□□□□ -0.413e-6■■■■■ 122.9
SF3B1O75533 N4BP2L2-212ENST00000505213 2343 ntTSL 510.61□□□□□ -0.713e-6■■■■■ 122.8
SF3B1O75533 N4BP2L2-204ENST00000399396 2872 ntTSL 5 BASIC6.03□□□□□ -1.443e-6■■■■■ 122.8
SF3B1O75533 N4BP2L2-206ENST00000473025 273 ntTSL 45.57□□□□□ -1.523e-6■■■■■ 122.8
SF3B1O75533 N4BP2L2-213ENST00000509076 3060 ntTSL 55.38□□□□□ -1.553e-6■■■■■ 122.8
SF3B1O75533 N4BP2L2-202ENST00000357505 2917 ntTSL 2 BASIC4.45□□□□□ -1.73e-6■■■■■ 122.8
SF3B1O75533 N4BP2L2-211ENST00000504114 2513 ntTSL 5 BASIC2.78□□□□□ -1.963e-6■■■■■ 122.8
SF3B1O75533 N4BP2L2-205ENST00000446957 2071 ntTSL 5 BASIC2.5□□□□□ -2.013e-6■■■■■ 122.8
SF3B1O75533 RAP1GAP-211ENST00000495204 2489 ntAPPRIS ALT2 TSL 1 (best) BASIC14.77□□□□□ -0.052e-6■■■■■ 122.8
SF3B1O75533 RAP1GAP-209ENST00000471600 3238 ntTSL 511.93□□□□□ -0.52e-6■■■■■ 122.8
SF3B1O75533 ABCA2-221ENST00000492260 2062 ntTSL 519.7■□□□□ 0.743e-7■■■■■ 122.8
SF3B1O75533 ATG4D-211ENST00000589753 931 ntTSL 1 (best)16.29■□□□□ 0.22e-6■■■■■ 122.8
SF3B1O75533 ATG4D-207ENST00000587256 607 ntTSL 516.19■□□□□ 0.182e-6■■■■■ 122.8
SF3B1O75533 ATG4D-206ENST00000586863 529 ntTSL 415.46■□□□□ 0.072e-6■■■■■ 122.8
SF3B1O75533 GRAP2-201ENST00000344138 3893 ntAPPRIS P1 TSL 1 (best) BASIC11.11□□□□□ -0.632e-9■■■■■ 122.8
SF3B1O75533 ZNF37BP-202ENST00000452075 8637 ntTSL 2 BASIC10.57□□□□□ -0.726e-7■■■■■ 122.8
SF3B1O75533 ST6GAL1-214ENST00000455441 596 ntTSL 422.48■■□□□ 1.193e-6■■■■■ 122.8
SF3B1O75533 ST6GAL1-205ENST00000427315 544 ntTSL 422.31■■□□□ 1.163e-6■■■■■ 122.8
SF3B1O75533 ST6GAL1-201ENST00000169298 4645 ntAPPRIS P1 TSL 1 (best) BASIC14.13□□□□□ -0.153e-6■■■■■ 122.8
SF3B1O75533 ST6GAL1-215ENST00000457772 3947 ntTSL 5 BASIC12.46□□□□□ -0.423e-6■■■■■ 122.8
SF3B1O75533 TBCD-214ENST00000574801 586 ntTSL 414.48□□□□□ -0.094e-6■■■■■ 122.7
SF3B1O75533 FER-209ENST00000618353 1420 ntTSL 1 (best) BASIC8.64□□□□□ -1.034e-6■■■■■ 122.7
SF3B1O75533 LIX1-AS1-201ENST00000504578 1793 ntTSL 5 BASIC5.73□□□□□ -1.492e-6■■■■■ 122.7
Retrieved 100 of 46,956 protein–RNA pairs in 1378.3 ms