Protein–RNA interactions for Protein: P55317

FOXA1, Hepatocyte nuclear factor 3-alpha, humanhuman

Predictions only

Length 472 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
FOXA1P55317 AC090340.1-201ENST00000620778 4980 ntBASIC17.38■□□□□ 0.37
FOXA1P55317 SLC9A1-203ENST00000374086 2183 ntTSL 1 (best) BASIC17.38■□□□□ 0.37
FOXA1P55317 WDSUB1-203ENST00000392796 1812 ntAPPRIS P1 TSL 2 BASIC17.37■□□□□ 0.37
FOXA1P55317 AC009949.1-201ENST00000623048 1830 ntBASIC17.37■□□□□ 0.37
FOXA1P55317 MAGED2-213ENST00000627068 1811 ntAPPRIS ALT2 TSL 5 BASIC17.37■□□□□ 0.37
FOXA1P55317 DGKI-203ENST00000446122 4070 ntAPPRIS ALT2 TSL 5 BASIC17.37■□□□□ 0.37
FOXA1P55317 ZSCAN10-207ENST00000575108 2247 ntTSL 2 BASIC17.37■□□□□ 0.37
FOXA1P55317 LUC7L-204ENST00000397783 1504 ntTSL 2 BASIC17.37■□□□□ 0.37
FOXA1P55317 GGT5-201ENST00000263112 2334 ntAPPRIS ALT2 TSL 1 (best) BASIC17.37■□□□□ 0.37
FOXA1P55317 PITPNC1-201ENST00000299954 6359 ntAPPRIS ALT2 TSL 5 BASIC17.37■□□□□ 0.37
FOXA1P55317 BFSP1-205ENST00000536626 2075 ntTSL 2 BASIC17.37■□□□□ 0.37
FOXA1P55317 MPC2-201ENST00000271373 798 ntAPPRIS P1 TSL 1 (best) BASIC17.37■□□□□ 0.37
FOXA1P55317 UNC5B-AS1-201ENST00000447119 647 ntTSL 2 BASIC17.37■□□□□ 0.37
FOXA1P55317 KRT8P12-201ENST00000468527 998 ntTSL 2 BASIC17.37■□□□□ 0.37
FOXA1P55317 AL442663.3-201ENST00000554737 1000 ntTSL 3 BASIC17.37■□□□□ 0.37
FOXA1P55317 GCSHP2-201ENST00000560971 527 ntBASIC17.37■□□□□ 0.37
FOXA1P55317 ABCB9-207ENST00000442833 2587 ntTSL 1 (best) BASIC17.37■□□□□ 0.37
FOXA1P55317 PYCR1-217ENST00000629768 1740 ntTSL 5 BASIC17.37■□□□□ 0.37
FOXA1P55317 CHRNA4-207ENST00000615287 5643 ntTSL 5 BASIC17.37■□□□□ 0.37
FOXA1P55317 RAB11FIP2-201ENST00000355624 6061 ntAPPRIS P1 TSL 1 (best) BASIC17.37■□□□□ 0.37
FOXA1P55317 SLC22A18-203ENST00000380574 1755 ntAPPRIS P1 TSL 1 (best) BASIC17.37■□□□□ 0.37
FOXA1P55317 WASF1-205ENST00000392587 2675 ntAPPRIS P1 TSL 1 (best) BASIC17.37■□□□□ 0.37
FOXA1P55317 EDEM1-204ENST00000445686 1363 ntTSL 2 BASIC17.37■□□□□ 0.37
FOXA1P55317 STXBP2-202ENST00000414284 1859 ntAPPRIS ALT1 TSL 1 (best) BASIC17.37■□□□□ 0.37
FOXA1P55317 CD209-210ENST00000601951 1439 ntAPPRIS ALT2 TSL 1 (best) BASIC17.37■□□□□ 0.37
FOXA1P55317 MOB3A-201ENST00000357066 3391 ntAPPRIS P1 TSL 1 (best) BASIC17.37■□□□□ 0.37
FOXA1P55317 ZNF211-201ENST00000240731 2440 ntAPPRIS P4 TSL 2 BASIC17.37■□□□□ 0.37
FOXA1P55317 CD24-204ENST00000619133 2513 ntAPPRIS P3 TSL 2 BASIC17.37■□□□□ 0.37
FOXA1P55317 CYHR1-204ENST00000438911 2020 ntAPPRIS P1 TSL 2 BASIC17.37■□□□□ 0.37
FOXA1P55317 PDE4A-201ENST00000293683 2583 ntAPPRIS ALT2 TSL 1 (best) BASIC17.36■□□□□ 0.37
FOXA1P55317 WDR13-201ENST00000218056 2124 ntAPPRIS P1 TSL 1 (best) BASIC17.36■□□□□ 0.37
FOXA1P55317 CCDC112-205ENST00000506442 2145 ntAPPRIS ALT2 TSL 2 BASIC17.36■□□□□ 0.37
FOXA1P55317 ADCY3-201ENST00000260600 5050 ntAPPRIS P3 TSL 1 (best) BASIC17.36■□□□□ 0.37
FOXA1P55317 CLCN2-205ENST00000457512 2820 ntAPPRIS ALT2 TSL 2 BASIC17.36■□□□□ 0.37
FOXA1P55317 ZNF280B-203ENST00000626650 5721 ntAPPRIS P1 TSL 2 BASIC17.36■□□□□ 0.37
FOXA1P55317 WWP1-202ENST00000517970 4686 ntAPPRIS P1 TSL 1 (best) BASIC17.36■□□□□ 0.37
FOXA1P55317 CCDC177-201ENST00000599174 4131 ntAPPRIS P1 TSL 3 BASIC17.36■□□□□ 0.37
FOXA1P55317 NEIL1-221ENST00000569035 1797 ntAPPRIS P1 TSL 1 (best) BASIC17.36■□□□□ 0.37
FOXA1P55317 CHRNA5-201ENST00000299565 3623 ntAPPRIS P1 TSL 1 (best) BASIC17.36■□□□□ 0.37
FOXA1P55317 ATXN7-210ENST00000487717 3683 ntAPPRIS P3 TSL 5 BASIC17.36■□□□□ 0.37
FOXA1P55317 LRFN3-201ENST00000246529 2513 ntAPPRIS P1 TSL 1 (best) BASIC17.36■□□□□ 0.37
FOXA1P55317 PLPP7-201ENST00000372261 972 ntTSL 2 BASIC17.36■□□□□ 0.37
FOXA1P55317 RABL2A-202ENST00000393165 1118 ntAPPRIS ALT2 TSL 1 (best) BASIC17.36■□□□□ 0.37
FOXA1P55317 AL596275.1-201ENST00000423464 877 ntBASIC17.36■□□□□ 0.37
FOXA1P55317 ZNF534-203ENST00000432303 956 ntTSL 2 BASIC17.36■□□□□ 0.37
FOXA1P55317 TMA16-209ENST00000513272 803 ntTSL 2 BASIC17.36■□□□□ 0.37
FOXA1P55317 GPX4-207ENST00000589115 812 ntTSL 2 BASIC17.36■□□□□ 0.37
FOXA1P55317 TK1-205ENST00000590862 642 ntTSL 3 BASIC17.36■□□□□ 0.37
FOXA1P55317 ZNF534-205ENST00000617900 1085 ntTSL 2 BASIC17.36■□□□□ 0.37
FOXA1P55317 AC141257.4-201ENST00000634557 245 ntBASIC17.36■□□□□ 0.37
FOXA1P55317 AC136944.6-201ENST00000634818 245 ntBASIC17.36■□□□□ 0.37
FOXA1P55317 REXO1L11P-201ENST00000620964 1927 ntBASIC17.36■□□□□ 0.37
FOXA1P55317 RASA2-202ENST00000452898 2562 ntAPPRIS ALT2 TSL 5 BASIC17.36■□□□□ 0.37
FOXA1P55317 ZNF853-201ENST00000457543 3857 ntAPPRIS P1 TSL 3 BASIC17.36■□□□□ 0.37
FOXA1P55317 AC022898.2-201ENST00000616822 1312 ntBASIC17.36■□□□□ 0.37
FOXA1P55317 ARF1-214ENST00000541182 2006 ntAPPRIS P1 TSL 2 BASIC17.36■□□□□ 0.37
FOXA1P55317 PRSS36-207ENST00000569305 2723 ntAPPRIS ALT2 TSL 1 (best) BASIC17.36■□□□□ 0.37
FOXA1P55317 NOL3-201ENST00000268605 1394 ntAPPRIS P3 TSL 3 BASIC17.36■□□□□ 0.37
FOXA1P55317 NOL3-211ENST00000568146 1351 ntAPPRIS ALT2 TSL 1 (best) BASIC17.36■□□□□ 0.37
FOXA1P55317 FASTK-202ENST00000353841 1402 ntTSL 1 (best) BASIC17.36■□□□□ 0.37
FOXA1P55317 KIF25-AS1-201ENST00000414364 1420 ntTSL 2 BASIC17.36■□□□□ 0.37
FOXA1P55317 ACBD3-201ENST00000366812 3573 ntAPPRIS P1 TSL 1 (best) BASIC17.36■□□□□ 0.37
FOXA1P55317 TFAP2E-201ENST00000373235 2189 ntAPPRIS P1 TSL 1 (best) BASIC17.36■□□□□ 0.37
FOXA1P55317 ARL5A-201ENST00000295087 5326 ntAPPRIS P1 TSL 1 (best) BASIC17.36■□□□□ 0.37
FOXA1P55317 SDC1-203ENST00000403076 1523 ntTSL 1 (best) BASIC17.36■□□□□ 0.37
FOXA1P55317 SRP9-203ENST00000366839 1596 ntTSL 1 (best) BASIC17.36■□□□□ 0.37
FOXA1P55317 GAL3ST1-201ENST00000338911 1782 ntAPPRIS P1 TSL 1 (best) BASIC17.35■□□□□ 0.37
FOXA1P55317 ZSCAN18-201ENST00000240727 2779 ntAPPRIS P3 TSL 1 (best) BASIC17.35■□□□□ 0.37
FOXA1P55317 CCDC63-202ENST00000545036 1887 ntAPPRIS ALT2 TSL 2 BASIC17.35■□□□□ 0.37
FOXA1P55317 UQCRC1-201ENST00000203407 1985 ntAPPRIS P1 TSL 1 (best) BASIC17.35■□□□□ 0.37
FOXA1P55317 TBXAS1-210ENST00000458722 2057 ntTSL 2 BASIC17.35■□□□□ 0.37
FOXA1P55317 ABHD14B-206ENST00000483233 2056 ntAPPRIS P1 TSL 1 (best) BASIC17.35■□□□□ 0.37
FOXA1P55317 PDE2A-226ENST00000544570 3119 ntTSL 5 BASIC17.35■□□□□ 0.37
FOXA1P55317 AR-209ENST00000613054 3532 ntTSL 1 (best) BASIC17.35■□□□□ 0.37
FOXA1P55317 EXOSC5-201ENST00000221233 1118 ntAPPRIS P1 TSL 1 (best) BASIC17.35■□□□□ 0.37
FOXA1P55317 CXADR-204ENST00000400166 1080 ntTSL 1 (best) BASIC17.35■□□□□ 0.37
FOXA1P55317 AC234772.2-201ENST00000456532 375 ntTSL 3 BASIC17.35■□□□□ 0.37
FOXA1P55317 GCFC2-207ENST00000470503 1066 ntTSL 1 (best) BASIC17.35■□□□□ 0.37
FOXA1P55317 AC091133.2-201ENST00000505903 428 ntTSL 3 BASIC17.35■□□□□ 0.37
FOXA1P55317 LINC00599-204ENST00000521242 716 ntTSL 3 BASIC17.35■□□□□ 0.37
FOXA1P55317 ASF1B-205ENST00000592798 769 ntTSL 2 BASIC17.35■□□□□ 0.37
FOXA1P55317 CENPS-CORT-205ENST00000602787 571 ntAPPRIS P1 TSL 3 BASIC17.35■□□□□ 0.37
FOXA1P55317 AL138966.2-201ENST00000621997 464 ntBASIC17.35■□□□□ 0.37
FOXA1P55317 NF2-208ENST00000403435 2568 ntTSL 5 BASIC17.35■□□□□ 0.37
FOXA1P55317 FAM50A-202ENST00000393600 1352 ntAPPRIS P1 TSL 1 (best) BASIC17.35■□□□□ 0.37
FOXA1P55317 RAB29-205ENST00000446390 1441 ntTSL 2 BASIC17.35■□□□□ 0.37
FOXA1P55317 NDUFA10-214ENST00000620965 1489 ntAPPRIS ALT1 TSL 5 BASIC17.35■□□□□ 0.37
FOXA1P55317 PARD3B-206ENST00000462231 2968 ntTSL 1 (best) BASIC17.35■□□□□ 0.37
FOXA1P55317 AL138688.1-201ENST00000624851 1594 ntBASIC17.35■□□□□ 0.37
FOXA1P55317 DICER1-AS1-204ENST00000554631 1709 ntTSL 2 BASIC17.35■□□□□ 0.37
FOXA1P55317 DNM2-201ENST00000355667 3541 ntTSL 1 (best) BASIC17.35■□□□□ 0.37
FOXA1P55317 CAMK2G-205ENST00000372765 1822 ntTSL 5 BASIC17.35■□□□□ 0.37
FOXA1P55317 FAM9B-202ENST00000362066 2047 ntTSL 2 BASIC17.35■□□□□ 0.37
FOXA1P55317 SLC5A10-204ENST00000395647 2140 ntTSL 2 BASIC17.35■□□□□ 0.37
FOXA1P55317 HADHB-208ENST00000537713 2142 ntTSL 2 BASIC17.35■□□□□ 0.37
FOXA1P55317 ZGLP1-202ENST00000403903 2303 ntAPPRIS P2 TSL 1 (best) BASIC17.35■□□□□ 0.37
FOXA1P55317 GALNT9-201ENST00000328957 2410 ntAPPRIS P1 TSL 1 (best) BASIC17.35■□□□□ 0.37
FOXA1P55317 QSOX1-201ENST00000367600 2519 ntAPPRIS ALT2 TSL 1 (best) BASIC17.35■□□□□ 0.37
FOXA1P55317 CADM3-201ENST00000368124 2546 ntAPPRIS P3 TSL 1 (best) BASIC17.35■□□□□ 0.37
FOXA1P55317 ISM1-201ENST00000262487 2593 ntAPPRIS P1 TSL 5 BASIC17.35■□□□□ 0.37
Retrieved 100 of 98,524 protein–RNA pairs in 49.3 ms