Protein–RNA interactions for Protein: P48230

TM4SF4, Transmembrane 4 L6 family member 4, humanhuman

Predictions only

Length 202 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TM4SF4P48230 KLF9-201ENST00000377126 5175 ntAPPRIS P1 TSL 1 (best) BASIC20.32■□□□□ 0.84
TM4SF4P48230 TMEM109-201ENST00000227525 2413 ntAPPRIS P1 TSL 1 (best) BASIC20.32■□□□□ 0.84
TM4SF4P48230 COBL-210ENST00000632460 1941 ntTSL 5 BASIC20.32■□□□□ 0.84
TM4SF4P48230 CTNNBL1-204ENST00000405275 2076 ntTSL 5 BASIC20.32■□□□□ 0.84
TM4SF4P48230 ADH5P3-201ENST00000433842 1137 ntBASIC20.32■□□□□ 0.84
TM4SF4P48230 AC016735.2-201ENST00000438736 569 ntTSL 4 BASIC20.32■□□□□ 0.84
TM4SF4P48230 TSPY16P-201ENST00000449843 468 ntBASIC20.32■□□□□ 0.84
TM4SF4P48230 GATB-205ENST00000508611 605 ntTSL 2 BASIC20.32■□□□□ 0.84
TM4SF4P48230 AKR1E2-212ENST00000532248 844 ntTSL 1 (best) BASIC20.32■□□□□ 0.84
TM4SF4P48230 AC243562.3-201ENST00000559866 1212 ntTSL 1 (best) BASIC20.32■□□□□ 0.84
TM4SF4P48230 RCAN3-211ENST00000630217 658 ntTSL 1 (best) BASIC20.32■□□□□ 0.84
TM4SF4P48230 AMDHD2-203ENST00000413459 2049 ntTSL 2 BASIC20.32■□□□□ 0.84
TM4SF4P48230 PIGF-201ENST00000281382 1372 ntAPPRIS P1 TSL 1 (best) BASIC20.32■□□□□ 0.84
TM4SF4P48230 SIRT6-203ENST00000594279 1507 ntTSL 3 BASIC20.32■□□□□ 0.84
TM4SF4P48230 AL445238.1-203ENST00000606050 1525 ntTSL 2 BASIC20.32■□□□□ 0.84
TM4SF4P48230 NUDC-201ENST00000321265 1800 ntAPPRIS P1 TSL 1 (best) BASIC20.32■□□□□ 0.84
TM4SF4P48230 DALRD3-201ENST00000313778 1968 ntTSL 2 BASIC20.32■□□□□ 0.84
TM4SF4P48230 MYEOV-202ENST00000441339 1996 ntAPPRIS P3 TSL 2 BASIC20.32■□□□□ 0.84
TM4SF4P48230 RELA-201ENST00000308639 2681 ntAPPRIS ALT1 TSL 1 (best) BASIC20.31■□□□□ 0.84
TM4SF4P48230 GTF2IRD2-207ENST00000625377 1910 ntTSL 5 BASIC20.31■□□□□ 0.84
TM4SF4P48230 MAGEA3-203ENST00000598245 1762 ntAPPRIS P1 TSL 2 BASIC20.31■□□□□ 0.84
TM4SF4P48230 MAGEA6-204ENST00000616035 1762 ntAPPRIS P1 TSL 5 BASIC20.31■□□□□ 0.84
TM4SF4P48230 PSMC5-202ENST00000375812 1494 ntTSL 2 BASIC20.31■□□□□ 0.84
TM4SF4P48230 NYAP1-202ENST00000454988 2777 ntTSL 5 BASIC20.31■□□□□ 0.84
TM4SF4P48230 PDZD3-203ENST00000525131 1882 ntTSL 2 BASIC20.31■□□□□ 0.84
TM4SF4P48230 DNAJB5-203ENST00000453597 2589 ntTSL 2 BASIC20.31■□□□□ 0.84
TM4SF4P48230 NKAIN4-202ENST00000370313 1421 ntTSL 3 BASIC20.31■□□□□ 0.84
TM4SF4P48230 METTL26-202ENST00000338401 544 ntTSL 1 (best) BASIC20.31■□□□□ 0.84
TM4SF4P48230 NABP1-203ENST00000409510 843 ntTSL 5 BASIC20.31■□□□□ 0.84
TM4SF4P48230 BASP1P1-201ENST00000430708 665 ntBASIC20.31■□□□□ 0.84
TM4SF4P48230 IGLL5-201ENST00000526893 1050 ntAPPRIS P2 TSL 1 (best) BASIC20.31■□□□□ 0.84
TM4SF4P48230 IGLL5-202ENST00000531372 882 ntTSL 1 (best) BASIC20.31■□□□□ 0.84
TM4SF4P48230 GABARAP-205ENST00000573928 476 ntTSL 1 (best) BASIC20.31■□□□□ 0.84
TM4SF4P48230 PPP1R14A-203ENST00000587515 607 ntTSL 2 BASIC20.31■□□□□ 0.84
TM4SF4P48230 YTHDF3-AS1-201ENST00000603538 718 ntBASIC20.31■□□□□ 0.84
TM4SF4P48230 LAG3-201ENST00000203629 1974 ntAPPRIS P2 TSL 1 (best) BASIC20.31■□□□□ 0.84
TM4SF4P48230 CRIM1-201ENST00000280527 5912 ntAPPRIS P1 TSL 1 (best) BASIC20.31■□□□□ 0.84
TM4SF4P48230 VPS53-201ENST00000291074 2656 ntTSL 1 (best) BASIC20.31■□□□□ 0.84
TM4SF4P48230 AKIRIN2-201ENST00000257787 1662 ntAPPRIS P1 TSL 1 (best) BASIC20.31■□□□□ 0.84
TM4SF4P48230 LYPD5-203ENST00000594013 1519 ntAPPRIS P3 TSL 2 BASIC20.31■□□□□ 0.84
TM4SF4P48230 PLXNB2-214ENST00000614805 1387 ntTSL 5 BASIC20.31■□□□□ 0.84
TM4SF4P48230 POMGNT1-201ENST00000371984 2728 ntAPPRIS P1 TSL 1 (best) BASIC20.31■□□□□ 0.84
TM4SF4P48230 BYSL-201ENST00000230340 2029 ntAPPRIS P1 TSL 1 (best) BASIC20.31■□□□□ 0.84
TM4SF4P48230 MATN4-202ENST00000360607 2127 ntTSL 1 (best) BASIC20.3■□□□□ 0.84
TM4SF4P48230 PTCHD3-202ENST00000622555 1720 ntTSL 1 (best) BASIC20.3■□□□□ 0.84
TM4SF4P48230 ENTPD6-203ENST00000376652 2750 ntAPPRIS P3 TSL 1 (best) BASIC20.3■□□□□ 0.84
TM4SF4P48230 GULP1-209ENST00000410051 1595 ntTSL 1 (best) BASIC20.3■□□□□ 0.84
TM4SF4P48230 UBXN6-202ENST00000394765 1809 ntTSL 1 (best) BASIC20.3■□□□□ 0.84
TM4SF4P48230 PARD3-202ENST00000346874 5894 ntAPPRIS ALT2 TSL 1 (best) BASIC20.3■□□□□ 0.84
TM4SF4P48230 PARD3-203ENST00000350537 5867 ntAPPRIS ALT2 TSL 1 (best) BASIC20.3■□□□□ 0.84
TM4SF4P48230 EIF5A-201ENST00000336452 1256 ntTSL 1 (best) BASIC20.3■□□□□ 0.84
TM4SF4P48230 MIR661-201ENST00000384842 89 ntBASIC20.3■□□□□ 0.84
TM4SF4P48230 TFAMP1-201ENST00000412727 736 ntBASIC20.3■□□□□ 0.84
TM4SF4P48230 ZDHHC20-IT1-201ENST00000417513 440 ntTSL 3 BASIC20.3■□□□□ 0.84
TM4SF4P48230 LINC00404-201ENST00000418660 428 ntTSL 2 BASIC20.3■□□□□ 0.84
TM4SF4P48230 TTC31-205ENST00000442235 958 ntTSL 1 (best) BASIC20.3■□□□□ 0.84
TM4SF4P48230 IL18BP-211ENST00000531053 853 ntAPPRIS ALT2 TSL 2 BASIC20.3■□□□□ 0.84
TM4SF4P48230 AC015712.4-202ENST00000558641 1007 ntTSL 4 BASIC20.3■□□□□ 0.84
TM4SF4P48230 AC051619.7-201ENST00000568314 623 ntBASIC20.3■□□□□ 0.84
TM4SF4P48230 IGHV3OR16-6-201ENST00000568775 360 ntBASIC20.3■□□□□ 0.84
TM4SF4P48230 KLK6-204ENST00000594641 842 ntAPPRIS P1 TSL 1 (best) BASIC20.3■□□□□ 0.84
TM4SF4P48230 AC005759.1-201ENST00000594805 855 ntTSL 3 BASIC20.3■□□□□ 0.84
TM4SF4P48230 WNT1-202ENST00000613114 1278 ntTSL 5 BASIC20.3■□□□□ 0.84
TM4SF4P48230 HIST1H2AK-201ENST00000618958 393 ntAPPRIS P1 BASIC20.3■□□□□ 0.84
TM4SF4P48230 CBR3-AS1-216ENST00000624883 564 ntTSL 3 BASIC20.3■□□□□ 0.84
TM4SF4P48230 PGLYRP1-201ENST00000008938 720 ntAPPRIS P1 TSL 1 (best) BASIC20.3■□□□□ 0.84
TM4SF4P48230 KCNJ10-208ENST00000639408 1546 ntTSL 5 BASIC20.3■□□□□ 0.84
TM4SF4P48230 IGFALS-201ENST00000215539 2116 ntAPPRIS P1 TSL 1 (best) BASIC20.3■□□□□ 0.84
TM4SF4P48230 SMIM3-201ENST00000526627 2332 ntAPPRIS P1 TSL 1 (best) BASIC20.3■□□□□ 0.84
TM4SF4P48230 GMCL1P1-201ENST00000463439 1581 ntBASIC20.29■□□□□ 0.84
TM4SF4P48230 AC068888.1-203ENST00000546566 1650 ntTSL 2 BASIC20.29■□□□□ 0.84
TM4SF4P48230 ZNF771-201ENST00000319296 2371 ntAPPRIS P1 TSL 1 (best) BASIC20.29■□□□□ 0.84
TM4SF4P48230 SNTG2-202ENST00000407292 1436 ntTSL 1 (best) BASIC20.29■□□□□ 0.84
TM4SF4P48230 DPM2-201ENST00000314392 1542 ntAPPRIS P1 TSL 1 (best) BASIC20.29■□□□□ 0.84
TM4SF4P48230 MTURN-201ENST00000324453 5937 ntAPPRIS P1 TSL 1 (best) BASIC20.29■□□□□ 0.84
TM4SF4P48230 DYNLL1-201ENST00000242577 720 ntAPPRIS P1 TSL 1 (best) BASIC20.29■□□□□ 0.84
TM4SF4P48230 EDF1-203ENST00000371649 790 ntTSL 2 BASIC20.29■□□□□ 0.84
TM4SF4P48230 ZSCAN2-205ENST00000379358 906 ntTSL 1 (best) BASIC20.29■□□□□ 0.84
TM4SF4P48230 AC112191.1-201ENST00000523689 701 ntBASIC20.29■□□□□ 0.84
TM4SF4P48230 AC091053.1-201ENST00000529883 744 ntTSL 3 BASIC20.29■□□□□ 0.84
TM4SF4P48230 VPS29-207ENST00000549970 818 ntTSL 3 BASIC20.29■□□□□ 0.84
TM4SF4P48230 MARVELD3-206ENST00000567566 850 ntAPPRIS ALT2 TSL 1 (best) BASIC20.29■□□□□ 0.84
TM4SF4P48230 NAA60-208ENST00000570819 833 ntTSL 2 BASIC20.29■□□□□ 0.84
TM4SF4P48230 AC067852.1-201ENST00000585572 594 ntTSL 4 BASIC20.29■□□□□ 0.84
TM4SF4P48230 TMEM178A-206ENST00000618232 1286 ntTSL 5 BASIC20.29■□□□□ 0.84
TM4SF4P48230 OLFM1-204ENST00000371793 2444 ntAPPRIS P1 TSL 3 BASIC20.29■□□□□ 0.84
TM4SF4P48230 SRPX-202ENST00000432886 1725 ntTSL 2 BASIC20.29■□□□□ 0.84
TM4SF4P48230 TTC12-202ENST00000393020 2541 ntTSL 5 BASIC20.29■□□□□ 0.84
TM4SF4P48230 USP39-202ENST00000409025 1946 ntTSL 5 BASIC20.29■□□□□ 0.84
TM4SF4P48230 CMTM7-201ENST00000334983 2038 ntAPPRIS P1 TSL 1 (best) BASIC20.29■□□□□ 0.84
TM4SF4P48230 AC006116.8-202ENST00000587620 1550 ntBASIC20.29■□□□□ 0.84
TM4SF4P48230 USP12-201ENST00000282344 4511 ntAPPRIS P1 TSL 1 (best) BASIC20.28■□□□□ 0.84
TM4SF4P48230 PI4KB-213ENST00000529142 2603 ntTSL 2 BASIC20.28■□□□□ 0.84
TM4SF4P48230 PPP4R2-201ENST00000356692 4984 ntAPPRIS P1 TSL 1 (best) BASIC20.28■□□□□ 0.84
TM4SF4P48230 SERPINE2-206ENST00000447280 1716 ntTSL 2 BASIC20.28■□□□□ 0.84
TM4SF4P48230 TAF5L-201ENST00000258281 3112 ntAPPRIS P1 TSL 5 BASIC20.28■□□□□ 0.84
TM4SF4P48230 TRIB3-201ENST00000217233 2499 ntAPPRIS P3 TSL 1 (best) BASIC20.28■□□□□ 0.84
TM4SF4P48230 HEY2-201ENST00000368364 2678 ntAPPRIS P1 TSL 1 (best) BASIC20.28■□□□□ 0.84
TM4SF4P48230 MRPL43-201ENST00000299179 747 ntTSL 1 (best) BASIC20.28■□□□□ 0.84
TM4SF4P48230 CIZ1-204ENST00000372938 2984 ntAPPRIS P3 TSL 1 (best) BASIC20.28■□□□□ 0.84
Retrieved 100 of 98,524 protein–RNA pairs in 19.3 ms