Protein–RNA interactions for Protein: P22415

USF1, Upstream stimulatory factor 1, humanhuman

Predicted RBP Predictions only

Length 310 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
USF1P22415 RHOV-201ENST00000220507 1705 ntAPPRIS P1 TSL 1 (best) BASIC15.22■□□□□ 0.03
USF1P22415 TMEM128-201ENST00000254742 1737 ntTSL 1 (best) BASIC15.22■□□□□ 0.03
USF1P22415 TH-205ENST00000381175 1898 ntTSL 1 (best) BASIC15.22■□□□□ 0.03
USF1P22415 ENOPH1-201ENST00000273920 2025 ntAPPRIS P1 TSL 1 (best) BASIC15.22■□□□□ 0.03
USF1P22415 SORBS3-221ENST00000523965 2028 ntTSL 1 (best) BASIC15.22■□□□□ 0.03
USF1P22415 GRB10-205ENST00000401949 2627 ntAPPRIS P1 TSL 1 (best) BASIC15.22■□□□□ 0.03
USF1P22415 UBE3A-201ENST00000232165 5051 ntAPPRIS P3 TSL 5 BASIC15.22■□□□□ 0.03
USF1P22415 TICAM1-202ENST00000621756 1650 ntTSL 5 BASIC15.22■□□□□ 0.03
USF1P22415 P2RX5-203ENST00000547178 1998 ntAPPRIS ALT2 TSL 1 (best) BASIC15.22■□□□□ 0.03
USF1P22415 EVPL-202ENST00000586740 6223 ntTSL 1 (best) BASIC15.22■□□□□ 0.03
USF1P22415 AIRE-201ENST00000291582 2257 ntAPPRIS P1 TSL 1 (best) BASIC15.22■□□□□ 0.03
USF1P22415 ENPP1-201ENST00000360971 7442 ntAPPRIS P1 TSL 1 (best) BASIC15.22■□□□□ 0.03
USF1P22415 OR6D1P-202ENST00000641007 5290 ntBASIC15.22■□□□□ 0.03
USF1P22415 FER1L4-210ENST00000615531 5998 ntBASIC15.21■□□□□ 0.03
USF1P22415 PPP2R5A-201ENST00000261461 3128 ntAPPRIS P1 TSL 1 (best) BASIC15.21■□□□□ 0.03
USF1P22415 MTSS1L-204ENST00000616026 2241 ntAPPRIS ALT2 TSL 5 BASIC15.21■□□□□ 0.03
USF1P22415 ZNF655-202ENST00000320583 1601 ntTSL 1 (best) BASIC15.21■□□□□ 0.03
USF1P22415 HLA-A-201ENST00000376802 1334 ntBASIC15.21■□□□□ 0.03
USF1P22415 ZNF623-203ENST00000526926 2612 ntAPPRIS ALT2 TSL 2 BASIC15.21■□□□□ 0.03
USF1P22415 PODXL2-201ENST00000342480 2186 ntAPPRIS P1 TSL 1 (best) BASIC15.21■□□□□ 0.03
USF1P22415 TSC2-201ENST00000219476 6156 ntAPPRIS P3 TSL 5 BASIC15.21■□□□□ 0.03
USF1P22415 KMT5B-205ENST00000402789 1599 ntTSL 5 BASIC15.21■□□□□ 0.03
USF1P22415 RCAN3-205ENST00000436717 2574 ntTSL 3 BASIC15.21■□□□□ 0.03
USF1P22415 MCCC1-214ENST00000610757 2410 ntTSL 5 BASIC15.21■□□□□ 0.03
USF1P22415 CORO6-212ENST00000584969 1416 ntAPPRIS ALT1 TSL 5 BASIC15.21■□□□□ 0.03
USF1P22415 TEPSIN-201ENST00000300714 2287 ntAPPRIS P2 TSL 1 (best) BASIC15.21■□□□□ 0.03
USF1P22415 PALM3-201ENST00000340790 2262 ntAPPRIS P2 TSL 5 BASIC15.21■□□□□ 0.03
USF1P22415 RSPH14-201ENST00000216036 1291 ntAPPRIS P1 TSL 1 (best) BASIC15.21■□□□□ 0.03
USF1P22415 RWDD3-202ENST00000370202 1235 ntAPPRIS P1 TSL 3 BASIC15.21■□□□□ 0.03
USF1P22415 AL590627.1-203ENST00000421194 1026 ntBASIC15.21■□□□□ 0.03
USF1P22415 AC091607.1-201ENST00000490318 1060 ntBASIC15.21■□□□□ 0.03
USF1P22415 FAM220A-205ENST00000578372 207 ntAPPRIS P1 TSL 1 (best) BASIC15.21■□□□□ 0.03
USF1P22415 AC120114.3-201ENST00000611923 658 ntBASIC15.21■□□□□ 0.03
USF1P22415 BX640515.1-201ENST00000617215 977 ntBASIC15.21■□□□□ 0.03
USF1P22415 AC023511.2-201ENST00000618803 211 ntBASIC15.21■□□□□ 0.03
USF1P22415 AC005258.1-201ENST00000621615 1268 ntAPPRIS P1 TSL 2 BASIC15.21■□□□□ 0.03
USF1P22415 ANKRD20A8P-203ENST00000641373 517 ntBASIC15.21■□□□□ 0.03
USF1P22415 HEXDC-203ENST00000577944 1820 ntTSL 5 BASIC15.21■□□□□ 0.03
USF1P22415 LRRC61-201ENST00000323078 1684 ntAPPRIS P1 TSL 1 (best) BASIC15.21■□□□□ 0.03
USF1P22415 INF2-204ENST00000398337 1689 ntTSL 1 (best) BASIC15.21■□□□□ 0.03
USF1P22415 ZNF787-202ENST00000587279 1657 ntTSL 2 BASIC15.21■□□□□ 0.03
USF1P22415 RAB4A-205ENST00000618010 2799 ntTSL 3 BASIC15.21■□□□□ 0.03
USF1P22415 GDF10-201ENST00000580279 2458 ntAPPRIS P1 TSL 1 (best) BASIC15.21■□□□□ 0.02
USF1P22415 PIEZO1-201ENST00000301015 8072 ntAPPRIS P1 TSL 1 (best) BASIC15.21■□□□□ 0.02
USF1P22415 DCLK2-207ENST00000635524 2153 ntAPPRIS ALT2 TSL 5 BASIC15.21■□□□□ 0.02
USF1P22415 UBE2Q2-208ENST00000569423 2969 ntTSL 2 BASIC15.21■□□□□ 0.02
USF1P22415 OCSTAMP-201ENST00000279028 2043 ntAPPRIS P1 TSL 5 BASIC15.21■□□□□ 0.02
USF1P22415 YY1AP1-213ENST00000405763 2011 ntAPPRIS ALT2 TSL 1 (best) BASIC15.21■□□□□ 0.02
USF1P22415 TTLL10-203ENST00000379290 2283 ntAPPRIS P1 TSL 1 (best) BASIC15.2■□□□□ 0.02
USF1P22415 PLEKHB2-204ENST00000409158 2277 ntTSL 2 BASIC15.2■□□□□ 0.02
USF1P22415 RNF114-201ENST00000244061 2503 ntAPPRIS P1 TSL 1 (best) BASIC15.2■□□□□ 0.02
USF1P22415 EGLN2-201ENST00000303961 2102 ntAPPRIS P1 TSL 1 (best) BASIC15.2■□□□□ 0.02
USF1P22415 UNG-202ENST00000336865 2130 ntAPPRIS ALT2 TSL 1 (best) BASIC15.2■□□□□ 0.02
USF1P22415 ELMOD1-202ENST00000443271 1990 ntAPPRIS P1 TSL 2 BASIC15.2■□□□□ 0.02
USF1P22415 NDRG2-227ENST00000554143 1980 ntAPPRIS ALT1 TSL 2 BASIC15.2■□□□□ 0.02
USF1P22415 OGG1-203ENST00000302036 2220 ntTSL 1 (best) BASIC15.2■□□□□ 0.02
USF1P22415 PPP1R18-201ENST00000274853 4599 ntAPPRIS P1 TSL 1 (best) BASIC15.2■□□□□ 0.02
USF1P22415 PPP1R18-205ENST00000615527 4597 ntAPPRIS P1 TSL 1 (best) BASIC15.2■□□□□ 0.02
USF1P22415 BCL11B-202ENST00000357195 7559 ntAPPRIS P4 TSL 1 (best) BASIC15.2■□□□□ 0.02
USF1P22415 EDC3-214ENST00000568176 1825 ntAPPRIS P1 TSL 1 (best) BASIC15.2■□□□□ 0.02
USF1P22415 SNAI3-AS1-202ENST00000563475 2081 ntTSL 1 (best) BASIC15.2■□□□□ 0.02
USF1P22415 CRTC3-208ENST00000560098 1421 ntTSL 1 (best) BASIC15.2■□□□□ 0.02
USF1P22415 USP7-201ENST00000344836 5412 ntAPPRIS P1 TSL 1 (best) BASIC15.2■□□□□ 0.02
USF1P22415 DIO1-201ENST00000322679 1658 ntTSL 1 (best) BASIC15.2■□□□□ 0.02
USF1P22415 DIO1-217ENST00000617230 1656 ntTSL 5 BASIC15.2■□□□□ 0.02
USF1P22415 AF238378.1-201ENST00000526806 358 ntBASIC15.2■□□□□ 0.02
USF1P22415 ERCC5-207ENST00000535557 1125 ntTSL 5 BASIC15.2■□□□□ 0.02
USF1P22415 TSFM-208ENST00000543727 651 ntTSL 1 (best) BASIC15.2■□□□□ 0.02
USF1P22415 SCN5A-214ENST00000612060 714 ntTSL 5 BASIC15.2■□□□□ 0.02
USF1P22415 MCRIP2-211ENST00000629534 341 ntTSL 2 BASIC15.2■□□□□ 0.02
USF1P22415 NOL3-201ENST00000268605 1394 ntAPPRIS P3 TSL 3 BASIC15.2■□□□□ 0.02
USF1P22415 SPSB1-201ENST00000328089 3120 ntAPPRIS P1 TSL 1 (best) BASIC15.2■□□□□ 0.02
USF1P22415 CASC2-205ENST00000454781 2216 ntTSL 1 (best) BASIC15.2■□□□□ 0.02
USF1P22415 SLC16A13-201ENST00000308027 1748 ntAPPRIS P1 TSL 1 (best) BASIC15.2■□□□□ 0.02
USF1P22415 SPAG1-206ENST00000520643 1723 ntTSL 2 BASIC15.2■□□□□ 0.02
USF1P22415 SYT17-207ENST00000568115 1721 ntTSL 5 BASIC15.2■□□□□ 0.02
USF1P22415 BTG3-201ENST00000339775 1485 ntTSL 1 (best) BASIC15.2■□□□□ 0.02
USF1P22415 ENDOV-225ENST00000522751 1475 ntTSL 5 BASIC15.2■□□□□ 0.02
USF1P22415 MRGPRF-AS1-201ENST00000538407 1490 ntTSL 1 (best) BASIC15.2■□□□□ 0.02
USF1P22415 RIPK2-201ENST00000220751 2584 ntAPPRIS P1 TSL 1 (best) BASIC15.2■□□□□ 0.02
USF1P22415 CPSF3-201ENST00000238112 2345 ntAPPRIS P1 TSL 1 (best) BASIC15.2■□□□□ 0.02
USF1P22415 GRM2-204ENST00000442933 2064 ntTSL 5 BASIC15.2■□□□□ 0.02
USF1P22415 VASH1-201ENST00000167106 5728 ntAPPRIS P1 TSL 1 (best) BASIC15.2■□□□□ 0.02
USF1P22415 PDIA2-202ENST00000404312 1575 ntAPPRIS ALT2 TSL 5 BASIC15.19■□□□□ 0.02
USF1P22415 CHPF-201ENST00000243776 3013 ntAPPRIS P1 TSL 1 (best) BASIC15.19■□□□□ 0.02
USF1P22415 PSMD3-201ENST00000264639 2158 ntAPPRIS P1 TSL 1 (best) BASIC15.19■□□□□ 0.02
USF1P22415 SLC6A9-201ENST00000357730 2168 ntTSL 1 (best) BASIC15.19■□□□□ 0.02
USF1P22415 LYPD3-201ENST00000244333 1694 ntAPPRIS P1 TSL 1 (best) BASIC15.19■□□□□ 0.02
USF1P22415 PRSS33-201ENST00000293851 1694 ntAPPRIS P1 TSL 1 (best) BASIC15.19■□□□□ 0.02
USF1P22415 TWIST2-202ENST00000612363 1404 ntAPPRIS P1 TSL 1 (best) BASIC15.19■□□□□ 0.02
USF1P22415 NPEPL1-203ENST00000525817 1780 ntTSL 2 BASIC15.19■□□□□ 0.02
USF1P22415 GLCCI1-201ENST00000223145 4743 ntAPPRIS P2 TSL 1 (best) BASIC15.19■□□□□ 0.02
USF1P22415 TEX30-205ENST00000376029 959 ntTSL 2 BASIC15.19■□□□□ 0.02
USF1P22415 DNASE1L2-202ENST00000382437 1222 ntAPPRIS P1 TSL 1 (best) BASIC15.19■□□□□ 0.02
USF1P22415 C1QB-203ENST00000509305 1254 ntAPPRIS P1 TSL 1 (best) BASIC15.19■□□□□ 0.02
USF1P22415 GOLGA7-203ENST00000518270 808 ntAPPRIS P1 TSL 5 BASIC15.19■□□□□ 0.02
USF1P22415 NCAM1-AS1-202ENST00000533638 618 ntTSL 4 BASIC15.19■□□□□ 0.02
USF1P22415 ATP5G2-204ENST00000549164 745 ntAPPRIS P1 TSL 3 BASIC15.19■□□□□ 0.02
USF1P22415 IRF8-202ENST00000562492 946 ntTSL 3 BASIC15.19■□□□□ 0.02
USF1P22415 AP001005.1-201ENST00000571755 1248 ntBASIC15.19■□□□□ 0.02
Retrieved 100 of 98,524 protein–RNA pairs in 46.8 ms