Protein–RNA interactions for Protein: A6NMZ7

COL6A6, Collagen alpha-6(VI) chain, humanhuman

Predictions only

Length 2,263 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL6A6A6NMZ7 TSSC4-202ENST00000380992 992 ntAPPRIS ALT2 TSL 5 BASIC16.1■□□□□ 0.17
COL6A6A6NMZ7 HDAC11-202ENST00000402259 1000 ntTSL 3 BASIC16.1■□□□□ 0.17
COL6A6A6NMZ7 KLF4P1-201ENST00000412782 1185 ntBASIC16.1■□□□□ 0.17
COL6A6A6NMZ7 FAM72B-205ENST00000471903 676 ntTSL 5 BASIC16.1■□□□□ 0.17
COL6A6A6NMZ7 AC011944.1-201ENST00000316148 1900 ntTSL 2 BASIC16.1■□□□□ 0.17
COL6A6A6NMZ7 PRR22-202ENST00000419421 1392 ntAPPRIS P1 TSL 2 BASIC16.09■□□□□ 0.17
COL6A6A6NMZ7 SUDS3-204ENST00000543473 4897 ntAPPRIS P1 TSL 1 (best) BASIC16.09■□□□□ 0.17
COL6A6A6NMZ7 BTG3-201ENST00000339775 1485 ntTSL 1 (best) BASIC16.09■□□□□ 0.17
COL6A6A6NMZ7 AC009041.2-206ENST00000563863 1728 ntTSL 2 BASIC16.09■□□□□ 0.17
COL6A6A6NMZ7 DIO1-201ENST00000322679 1658 ntTSL 1 (best) BASIC16.09■□□□□ 0.17
COL6A6A6NMZ7 DIO1-217ENST00000617230 1656 ntTSL 5 BASIC16.09■□□□□ 0.17
COL6A6A6NMZ7 CDK5R2-201ENST00000302625 2508 ntAPPRIS P1 BASIC16.09■□□□□ 0.17
COL6A6A6NMZ7 HGH1-201ENST00000347708 2531 ntAPPRIS P1 TSL 1 (best) BASIC16.09■□□□□ 0.17
COL6A6A6NMZ7 ALG9-214ENST00000614444 2028 ntAPPRIS P1 TSL 1 (best) BASIC16.09■□□□□ 0.17
COL6A6A6NMZ7 HSD17B6-203ENST00000554150 1547 ntAPPRIS P1 TSL 5 BASIC16.09■□□□□ 0.17
COL6A6A6NMZ7 AC096633.1-201ENST00000422446 749 ntBASIC16.09■□□□□ 0.17
COL6A6A6NMZ7 AL732437.1-201ENST00000442008 595 ntTSL 4 BASIC16.09■□□□□ 0.17
COL6A6A6NMZ7 PTGES3-204ENST00000448157 1017 ntTSL 2 BASIC16.09■□□□□ 0.17
COL6A6A6NMZ7 AC027307.3-201ENST00000594262 1100 ntBASIC16.09■□□□□ 0.17
COL6A6A6NMZ7 AC010522.1-205ENST00000598031 606 ntAPPRIS P1 TSL 3 BASIC16.09■□□□□ 0.17
COL6A6A6NMZ7 AC008667.4-201ENST00000607370 168 ntBASIC16.09■□□□□ 0.17
COL6A6A6NMZ7 DNAJC28-204ENST00000617313 2237 ntAPPRIS P1 TSL 5 BASIC16.09■□□□□ 0.17
COL6A6A6NMZ7 DHRS2-201ENST00000250383 1705 ntAPPRIS P3 TSL 1 (best) BASIC16.09■□□□□ 0.17
COL6A6A6NMZ7 ZBTB22-208ENST00000431845 2651 ntAPPRIS P1 TSL 1 (best) BASIC16.09■□□□□ 0.17
COL6A6A6NMZ7 MARK2-211ENST00000513765 2671 ntAPPRIS ALT2 TSL 1 (best) BASIC16.09■□□□□ 0.17
COL6A6A6NMZ7 GNS-207ENST00000542058 2020 ntAPPRIS ALT2 TSL 2 BASIC16.09■□□□□ 0.17
COL6A6A6NMZ7 GPATCH3-201ENST00000361720 2123 ntAPPRIS P1 TSL 1 (best) BASIC16.09■□□□□ 0.17
COL6A6A6NMZ7 PAXIP1-202ENST00000404141 3827 ntAPPRIS P1 TSL 5 BASIC16.09■□□□□ 0.17
COL6A6A6NMZ7 DPH1-201ENST00000263083 2221 ntAPPRIS P2 TSL 1 (best) BASIC16.09■□□□□ 0.17
COL6A6A6NMZ7 CYBA-210ENST00000569359 1415 ntTSL 1 (best) BASIC16.09■□□□□ 0.17
COL6A6A6NMZ7 RHNO1-204ENST00000489288 1870 ntAPPRIS P3 TSL 1 (best) BASIC16.09■□□□□ 0.17
COL6A6A6NMZ7 CHST2-201ENST00000309575 4582 ntAPPRIS P1 TSL 1 (best) BASIC16.09■□□□□ 0.17
COL6A6A6NMZ7 FXR2-201ENST00000250113 2957 ntAPPRIS P1 TSL 1 (best) BASIC16.09■□□□□ 0.17
COL6A6A6NMZ7 PRICKLE4-204ENST00000458694 1646 ntAPPRIS P2 TSL 5 BASIC16.09■□□□□ 0.17
COL6A6A6NMZ7 AC007249.2-201ENST00000553181 1737 ntTSL 5 BASIC16.08■□□□□ 0.17
COL6A6A6NMZ7 FNDC11-202ENST00000370098 1112 ntAPPRIS P1 TSL 1 (best) BASIC16.08■□□□□ 0.17
COL6A6A6NMZ7 PIGZ-204ENST00000443835 675 ntTSL 4 BASIC16.08■□□□□ 0.17
COL6A6A6NMZ7 IGHV3-65-201ENST00000523210 341 ntBASIC16.08■□□□□ 0.17
COL6A6A6NMZ7 AC091053.1-201ENST00000529883 744 ntTSL 3 BASIC16.08■□□□□ 0.17
COL6A6A6NMZ7 FXYD1-208ENST00000589209 428 ntAPPRIS P1 TSL 5 BASIC16.08■□□□□ 0.17
COL6A6A6NMZ7 ZEB1-AS1-209ENST00000607455 559 ntTSL 4 BASIC16.08■□□□□ 0.17
COL6A6A6NMZ7 FXYD1-211ENST00000612146 690 ntAPPRIS P1 TSL 3 BASIC16.08■□□□□ 0.17
COL6A6A6NMZ7 LCE1E-203ENST00000619588 267 ntAPPRIS ALT2 TSL 5 BASIC16.08■□□□□ 0.17
COL6A6A6NMZ7 AC009093.7-201ENST00000623853 1223 ntBASIC16.08■□□□□ 0.17
COL6A6A6NMZ7 FER1L4-211ENST00000616283 1818 ntTSL 1 (best) BASIC16.08■□□□□ 0.17
COL6A6A6NMZ7 EPN1-201ENST00000085079 2355 ntTSL 1 (best) BASIC16.08■□□□□ 0.17
COL6A6A6NMZ7 STX11-201ENST00000367568 1926 ntAPPRIS P1 TSL 1 (best) BASIC16.08■□□□□ 0.17
COL6A6A6NMZ7 TMED9-201ENST00000332598 1473 ntAPPRIS P1 TSL 1 (best) BASIC16.08■□□□□ 0.17
COL6A6A6NMZ7 HGNC:18790-211ENST00000621129 1483 ntAPPRIS P1 TSL 1 (best) BASIC16.08■□□□□ 0.17
COL6A6A6NMZ7 CYB561-213ENST00000581573 2344 ntAPPRIS P1 TSL 1 (best) BASIC16.08■□□□□ 0.17
COL6A6A6NMZ7 FAM53C-202ENST00000434981 1686 ntAPPRIS P1 TSL 1 (best) BASIC16.08■□□□□ 0.17
COL6A6A6NMZ7 MVK-201ENST00000228510 1956 ntAPPRIS P1 TSL 1 (best) BASIC16.08■□□□□ 0.17
COL6A6A6NMZ7 ACTL6B-201ENST00000160382 1537 ntAPPRIS P1 TSL 1 (best) BASIC16.08■□□□□ 0.16
COL6A6A6NMZ7 NRN1-201ENST00000244766 1624 ntAPPRIS P1 TSL 1 (best) BASIC16.08■□□□□ 0.16
COL6A6A6NMZ7 DMKN-213ENST00000447113 1611 ntAPPRIS ALT2 TSL 1 (best) BASIC16.08■□□□□ 0.16
COL6A6A6NMZ7 GRM6-201ENST00000231188 6143 ntAPPRIS P1 TSL 2 BASIC16.08■□□□□ 0.16
COL6A6A6NMZ7 C7orf49-202ENST00000424142 1738 ntTSL 2 BASIC16.08■□□□□ 0.16
COL6A6A6NMZ7 DYNC1LI2-201ENST00000258198 4515 ntAPPRIS P1 TSL 1 (best) BASIC16.08■□□□□ 0.16
COL6A6A6NMZ7 SHOX2-203ENST00000441443 3038 ntAPPRIS ALT2 TSL 5 BASIC16.08■□□□□ 0.16
COL6A6A6NMZ7 VMO1-202ENST00000354194 651 ntTSL 1 (best) BASIC16.08■□□□□ 0.16
COL6A6A6NMZ7 IGLL3P-201ENST00000412472 434 ntBASIC16.08■□□□□ 0.16
COL6A6A6NMZ7 FBXO4-206ENST00000509134 1284 ntTSL 5 BASIC16.08■□□□□ 0.16
COL6A6A6NMZ7 AP005018.1-201ENST00000525475 301 ntBASIC16.08■□□□□ 0.16
COL6A6A6NMZ7 TMEM106C-214ENST00000550161 976 ntTSL 3 BASIC16.08■□□□□ 0.16
COL6A6A6NMZ7 GIPC1-213ENST00000591349 1068 ntTSL 2 BASIC16.08■□□□□ 0.16
COL6A6A6NMZ7 AP001059.3-201ENST00000619053 235 ntBASIC16.08■□□□□ 0.16
COL6A6A6NMZ7 HFE2-206ENST00000634927 506 ntTSL 4 BASIC16.08■□□□□ 0.16
COL6A6A6NMZ7 CHEK2-202ENST00000348295 1771 ntTSL 5 BASIC16.08■□□□□ 0.16
COL6A6A6NMZ7 KIRREL2-201ENST00000262625 1969 ntAPPRIS ALT2 TSL 1 (best) BASIC16.08■□□□□ 0.16
COL6A6A6NMZ7 FBLN7-205ENST00000409903 1989 ntTSL 5 BASIC16.08■□□□□ 0.16
COL6A6A6NMZ7 DUSP5-201ENST00000369583 2557 ntAPPRIS P1 TSL 1 (best) BASIC16.08■□□□□ 0.16
COL6A6A6NMZ7 HOMEZ-201ENST00000357460 4971 ntAPPRIS P2 TSL 1 (best) BASIC16.08■□□□□ 0.16
COL6A6A6NMZ7 CDV3-201ENST00000264993 3307 ntAPPRIS P1 TSL 1 (best) BASIC16.08■□□□□ 0.16
COL6A6A6NMZ7 PLBD1-201ENST00000240617 2426 ntAPPRIS P1 TSL 1 (best) BASIC16.08■□□□□ 0.16
COL6A6A6NMZ7 CPT2-203ENST00000635862 2319 ntTSL 5 BASIC16.08■□□□□ 0.16
COL6A6A6NMZ7 AZU1-202ENST00000592205 1713 ntTSL 2 BASIC16.08■□□□□ 0.16
COL6A6A6NMZ7 AL121761.2-201ENST00000598007 1648 ntBASIC16.08■□□□□ 0.16
COL6A6A6NMZ7 BSG-215ENST00000618006 1329 ntTSL 2 BASIC16.08■□□□□ 0.16
COL6A6A6NMZ7 CCDC50-202ENST00000392456 2454 ntAPPRIS P4 TSL 1 (best) BASIC16.08■□□□□ 0.16
COL6A6A6NMZ7 SAMD11-213ENST00000618181 2179 ntAPPRIS ALT2 TSL 5 BASIC16.08■□□□□ 0.16
COL6A6A6NMZ7 TICAM1-202ENST00000621756 1650 ntTSL 5 BASIC16.07■□□□□ 0.16
COL6A6A6NMZ7 DHRS4L2-203ENST00000534993 1450 ntTSL 3 BASIC16.07■□□□□ 0.16
COL6A6A6NMZ7 TATDN3-214ENST00000532324 1381 ntTSL 2 BASIC16.07■□□□□ 0.16
COL6A6A6NMZ7 ZNF276-208ENST00000568064 2203 ntTSL 5 BASIC16.07■□□□□ 0.16
COL6A6A6NMZ7 PQLC2L-201ENST00000312275 1201 ntAPPRIS ALT2 TSL 1 (best) BASIC16.07■□□□□ 0.16
COL6A6A6NMZ7 TCEAL3-202ENST00000372627 1113 ntAPPRIS P1 TSL 1 (best) BASIC16.07■□□□□ 0.16
COL6A6A6NMZ7 MACROD2-AS1-201ENST00000439451 1230 ntTSL 1 (best) BASIC16.07■□□□□ 0.16
COL6A6A6NMZ7 FBXL21-206ENST00000495672 589 ntTSL 4 BASIC16.07■□□□□ 0.16
COL6A6A6NMZ7 NAA50-208ENST00000497255 789 ntTSL 5 BASIC16.07■□□□□ 0.16
COL6A6A6NMZ7 AC112698.1-201ENST00000510299 916 ntBASIC16.07■□□□□ 0.16
COL6A6A6NMZ7 AL132711.1-201ENST00000557546 722 ntTSL 3 BASIC16.07■□□□□ 0.16
COL6A6A6NMZ7 AC010336.2-201ENST00000564226 506 ntBASIC16.07■□□□□ 0.16
COL6A6A6NMZ7 AC025048.6-201ENST00000634326 1161 ntBASIC16.07■□□□□ 0.16
COL6A6A6NMZ7 SDHAP2-201ENST00000455183 2001 ntBASIC16.07■□□□□ 0.16
COL6A6A6NMZ7 GMPPA-202ENST00000341142 1524 ntAPPRIS P1 TSL 5 BASIC16.07■□□□□ 0.16
COL6A6A6NMZ7 SDC1-203ENST00000403076 1523 ntTSL 1 (best) BASIC16.07■□□□□ 0.16
COL6A6A6NMZ7 TTYH3-201ENST00000258796 4840 ntAPPRIS P1 TSL 1 (best) BASIC16.07■□□□□ 0.16
COL6A6A6NMZ7 BRSK1-201ENST00000309383 3079 ntAPPRIS P1 TSL 1 (best) BASIC16.07■□□□□ 0.16
COL6A6A6NMZ7 ZNF707-222ENST00000532158 2218 ntAPPRIS P1 TSL 1 (best) BASIC16.07■□□□□ 0.16
COL6A6A6NMZ7 AC007952.6-201ENST00000573168 2673 ntBASIC16.07■□□□□ 0.16
Retrieved 100 of 98,524 protein–RNA pairs in 29.9 ms