Protein–RNA interactions for Protein: Q96RU2

USP28, Ubiquitin carboxyl-terminal hydrolase 28, humanhuman

Predictions only

Length 1,077 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
USP28Q96RU2 MIR3936HG-202ENST00000457998 733 ntTSL 2 BASIC20.55■□□□□ 0.88
USP28Q96RU2 CBLN1-202ENST00000536749 718 ntAPPRIS P1 TSL 5 BASIC20.55■□□□□ 0.88
USP28Q96RU2 MRPL46-202ENST00000558531 1002 ntTSL 2 BASIC20.55■□□□□ 0.88
USP28Q96RU2 ST20-MTHFS-203ENST00000615374 679 ntAPPRIS P1 TSL 3 BASIC20.55■□□□□ 0.88
USP28Q96RU2 AGAP6-201ENST00000374056 2703 ntAPPRIS ALT2 TSL 1 (best) BASIC20.55■□□□□ 0.88
USP28Q96RU2 SKOR1-202ENST00000380035 3675 ntAPPRIS ALT2 TSL 5 BASIC20.55■□□□□ 0.88
USP28Q96RU2 ODF2-204ENST00000372814 2249 ntTSL 2 BASIC20.55■□□□□ 0.88
USP28Q96RU2 JMJD4-201ENST00000366758 2595 ntTSL 1 (best) BASIC20.55■□□□□ 0.88
USP28Q96RU2 CHRNB4-202ENST00000412074 1355 ntTSL 1 (best) BASIC20.55■□□□□ 0.88
USP28Q96RU2 AATK-203ENST00000417379 5081 ntAPPRIS ALT2 TSL 1 (best) BASIC20.55■□□□□ 0.88
USP28Q96RU2 WIPF2-210ENST00000585043 2693 ntAPPRIS P2 TSL 1 (best) BASIC20.55■□□□□ 0.88
USP28Q96RU2 WT1-201ENST00000332351 3122 ntAPPRIS ALT2 TSL 1 (best) BASIC20.55■□□□□ 0.88
USP28Q96RU2 BOC-212ENST00000485230 2173 ntTSL 2 BASIC20.55■□□□□ 0.88
USP28Q96RU2 FAM66C-209ENST00000544214 2623 ntTSL 1 (best) BASIC20.55■□□□□ 0.88
USP28Q96RU2 RUBCNL-203ENST00000378787 2731 ntTSL 2 BASIC20.55■□□□□ 0.88
USP28Q96RU2 PRPF31-202ENST00000391755 1767 ntTSL 5 BASIC20.54■□□□□ 0.88
USP28Q96RU2 ATPAF1-214ENST00000576409 4158 ntAPPRIS P1 TSL 1 (best) BASIC20.54■□□□□ 0.88
USP28Q96RU2 WDR45-205ENST00000376358 1432 ntTSL 2 BASIC20.54■□□□□ 0.88
USP28Q96RU2 CDKN1B-201ENST00000228872 2657 ntAPPRIS P1 TSL 1 (best) BASIC20.54■□□□□ 0.88
USP28Q96RU2 C8orf33-201ENST00000331434 2677 ntAPPRIS P1 TSL 1 (best) BASIC20.54■□□□□ 0.88
USP28Q96RU2 ZBTB46-203ENST00000395104 5198 ntAPPRIS P1 TSL 2 BASIC20.54■□□□□ 0.88
USP28Q96RU2 LINC00304-203ENST00000565008 1864 ntBASIC20.54■□□□□ 0.88
USP28Q96RU2 LUC7L-204ENST00000397783 1504 ntTSL 2 BASIC20.54■□□□□ 0.88
USP28Q96RU2 BPTF-201ENST00000306378 9688 ntAPPRIS P2 TSL 1 (best) BASIC20.54■□□□□ 0.88
USP28Q96RU2 CYP2D6-204ENST00000389970 1714 ntTSL 5 BASIC20.54■□□□□ 0.88
USP28Q96RU2 DICER1-AS1-204ENST00000554631 1709 ntTSL 2 BASIC20.54■□□□□ 0.88
USP28Q96RU2 ADCYAP1-202ENST00000450565 918 ntAPPRIS P1 TSL 1 (best) BASIC20.54■□□□□ 0.88
USP28Q96RU2 AL136307.1-201ENST00000454882 411 ntTSL 2 BASIC20.54■□□□□ 0.88
USP28Q96RU2 RASA4DP-201ENST00000460726 1199 ntBASIC20.54■□□□□ 0.88
USP28Q96RU2 MYD88-211ENST00000495303 976 ntTSL 1 (best) BASIC20.54■□□□□ 0.88
USP28Q96RU2 AC091133.2-201ENST00000505903 428 ntTSL 3 BASIC20.54■□□□□ 0.88
USP28Q96RU2 CNTD2-203ENST00000513948 787 ntAPPRIS ALT2 TSL 2 BASIC20.54■□□□□ 0.88
USP28Q96RU2 MRPL52-210ENST00000555345 895 ntTSL 2 BASIC20.54■□□□□ 0.88
USP28Q96RU2 AL441883.1-201ENST00000566170 1045 ntBASIC20.54■□□□□ 0.88
USP28Q96RU2 C6orf48-210ENST00000614363 748 ntAPPRIS P1 TSL 5 BASIC20.54■□□□□ 0.88
USP28Q96RU2 AC009949.1-201ENST00000623048 1830 ntBASIC20.54■□□□□ 0.88
USP28Q96RU2 DOCK7-203ENST00000404627 2678 ntTSL 2 BASIC20.54■□□□□ 0.88
USP28Q96RU2 PRKRIP1-208ENST00000496391 3430 ntAPPRIS P1 TSL 2 BASIC20.54■□□□□ 0.88
USP28Q96RU2 THOP1-201ENST00000307741 4804 ntAPPRIS P1 TSL 1 (best) BASIC20.54■□□□□ 0.88
USP28Q96RU2 AC133963.1-201ENST00000504166 1679 ntBASIC20.54■□□□□ 0.88
USP28Q96RU2 PCDH1-201ENST00000287008 4793 ntAPPRIS P3 TSL 5 BASIC20.54■□□□□ 0.88
USP28Q96RU2 RUSC2-202ENST00000455600 5636 ntAPPRIS P1 TSL 1 (best) BASIC20.54■□□□□ 0.88
USP28Q96RU2 AL138828.1-202ENST00000576956 1881 ntTSL 5 BASIC20.54■□□□□ 0.88
USP28Q96RU2 SNAP91-201ENST00000195649 4434 ntAPPRIS ALT2 TSL 5 BASIC20.54■□□□□ 0.88
USP28Q96RU2 SNAP91-204ENST00000369694 4449 ntAPPRIS P2 TSL 5 BASIC20.54■□□□□ 0.88
USP28Q96RU2 PPM1M-202ENST00000323588 2193 ntAPPRIS P1 TSL 1 (best) BASIC20.53■□□□□ 0.88
USP28Q96RU2 ARFIP2-204ENST00000445086 1300 ntTSL 2 BASIC20.53■□□□□ 0.88
USP28Q96RU2 UBE2Q2-201ENST00000267938 3130 ntAPPRIS P1 TSL 1 (best) BASIC20.53■□□□□ 0.88
USP28Q96RU2 STXBP3-201ENST00000370008 2478 ntAPPRIS P1 TSL 1 (best) BASIC20.53■□□□□ 0.88
USP28Q96RU2 FMR1-205ENST00000370475 4308 ntAPPRIS P3 TSL 1 (best) BASIC20.53■□□□□ 0.88
USP28Q96RU2 CGB7-202ENST00000596965 1949 ntAPPRIS P1 TSL 2 BASIC20.53■□□□□ 0.88
USP28Q96RU2 MIB2-201ENST00000355826 3290 ntAPPRIS ALT2 TSL 1 (best) BASIC20.53■□□□□ 0.88
USP28Q96RU2 LOXL3-205ENST00000409986 2005 ntTSL 2 BASIC20.53■□□□□ 0.88
USP28Q96RU2 ACVR1C-201ENST00000243349 8994 ntAPPRIS P1 TSL 1 (best) BASIC20.53■□□□□ 0.88
USP28Q96RU2 SNX2-213ENST00000514949 2119 ntTSL 2 BASIC20.53■□□□□ 0.88
USP28Q96RU2 CTTN-203ENST00000376561 2247 ntTSL 1 (best) BASIC20.53■□□□□ 0.88
USP28Q96RU2 MAPK11-201ENST00000330651 2431 ntAPPRIS P1 TSL 1 (best) BASIC20.53■□□□□ 0.88
USP28Q96RU2 FAM19A3-201ENST00000361886 1056 ntAPPRIS P1 TSL 1 (best) BASIC20.53■□□□□ 0.88
USP28Q96RU2 AP003396.1-201ENST00000501918 507 ntTSL 5 BASIC20.53■□□□□ 0.88
USP28Q96RU2 AC021739.3-201ENST00000557908 855 ntTSL 2 BASIC20.53■□□□□ 0.88
USP28Q96RU2 C16orf74-203ENST00000602675 744 ntAPPRIS ALT2 TSL 1 (best) BASIC20.53■□□□□ 0.88
USP28Q96RU2 CADM1-222ENST00000616271 1246 ntTSL 5 BASIC20.53■□□□□ 0.88
USP28Q96RU2 ZNF655-203ENST00000357864 1370 ntTSL 2 BASIC20.53■□□□□ 0.88
USP28Q96RU2 CRYL1-202ENST00000382812 1581 ntTSL 1 (best) BASIC20.53■□□□□ 0.88
USP28Q96RU2 MAPK9-207ENST00000452135 4815 ntAPPRIS P5 TSL 5 BASIC20.53■□□□□ 0.88
USP28Q96RU2 DAP3-214ENST00000471642 1671 ntTSL 5 BASIC20.53■□□□□ 0.88
USP28Q96RU2 ETFBKMT-202ENST00000395763 2055 ntAPPRIS P1 TSL 1 (best) BASIC20.53■□□□□ 0.88
USP28Q96RU2 PILRB-208ENST00000452089 2099 ntAPPRIS P2 TSL 2 BASIC20.53■□□□□ 0.88
USP28Q96RU2 ARHGAP22-205ENST00000417912 2352 ntTSL 1 (best) BASIC20.53■□□□□ 0.88
USP28Q96RU2 TLE2-219ENST00000591529 2483 ntTSL 1 (best) BASIC20.53■□□□□ 0.88
USP28Q96RU2 TRAF3IP1-201ENST00000373327 4279 ntAPPRIS P3 TSL 1 (best) BASIC20.53■□□□□ 0.88
USP28Q96RU2 MAN2A1-201ENST00000261483 4667 ntAPPRIS P1 TSL 1 (best) BASIC20.53■□□□□ 0.88
USP28Q96RU2 A4GALT-202ENST00000381278 1935 ntAPPRIS P1 TSL 5 BASIC20.53■□□□□ 0.88
USP28Q96RU2 ACOT7-202ENST00000377842 1813 ntAPPRIS ALT2 TSL 1 (best) BASIC20.53■□□□□ 0.88
USP28Q96RU2 GBX2-203ENST00000551105 1307 ntTSL 1 (best) BASIC20.53■□□□□ 0.88
USP28Q96RU2 WDR37-206ENST00000620998 1303 ntTSL 5 BASIC20.53■□□□□ 0.88
USP28Q96RU2 AL391807.1-203ENST00000604392 2365 ntBASIC20.52■□□□□ 0.88
USP28Q96RU2 DIABLO-206ENST00000443649 2250 ntAPPRIS P1 TSL 2 BASIC20.52■□□□□ 0.88
USP28Q96RU2 SHTN1-203ENST00000392901 2190 ntAPPRIS ALT2 TSL 2 BASIC20.52■□□□□ 0.88
USP28Q96RU2 GCDH-201ENST00000222214 1956 ntAPPRIS P1 TSL 1 (best) BASIC20.52■□□□□ 0.88
USP28Q96RU2 FAM157B-201ENST00000446912 1795 ntTSL 2 BASIC20.52■□□□□ 0.88
USP28Q96RU2 ZBED3-AS1-208ENST00000512001 1668 ntTSL 3 BASIC20.52■□□□□ 0.88
USP28Q96RU2 RAB40C-205ENST00000539661 2609 ntAPPRIS P1 TSL 3 BASIC20.52■□□□□ 0.88
USP28Q96RU2 AC004832.3-202ENST00000439838 1470 ntAPPRIS P1 TSL 2 BASIC20.52■□□□□ 0.88
USP28Q96RU2 ZFC3H1-211ENST00000552037 1484 ntTSL 1 (best) BASIC20.52■□□□□ 0.88
USP28Q96RU2 KRT8P47-201ENST00000604727 1398 ntBASIC20.52■□□□□ 0.88
USP28Q96RU2 EXOC3L2-201ENST00000252482 1230 ntTSL 1 (best) BASIC20.52■□□□□ 0.88
USP28Q96RU2 SNCB-202ENST00000393693 1234 ntAPPRIS P1 TSL 1 (best) BASIC20.52■□□□□ 0.88
USP28Q96RU2 SPDYE15P-201ENST00000424157 909 ntBASIC20.52■□□□□ 0.88
USP28Q96RU2 LINC02199-203ENST00000510229 496 ntTSL 3 BASIC20.52■□□□□ 0.88
USP28Q96RU2 RPS20-210ENST00000523936 899 ntTSL 2 BASIC20.52■□□□□ 0.88
USP28Q96RU2 VASH1-204ENST00000554743 1096 ntTSL 3 BASIC20.52■□□□□ 0.88
USP28Q96RU2 SLC39A11-207ENST00000579732 1004 ntTSL 2 BASIC20.52■□□□□ 0.88
USP28Q96RU2 TXNL4A-211ENST00000592837 611 ntTSL 2 BASIC20.52■□□□□ 0.88
USP28Q96RU2 AC004076.1-201ENST00000596831 664 ntAPPRIS P1 TSL 2 BASIC20.52■□□□□ 0.88
USP28Q96RU2 AC024563.2-201ENST00000603282 481 ntBASIC20.52■□□□□ 0.88
USP28Q96RU2 PARP6-220ENST00000569795 2855 ntAPPRIS P1 TSL 5 BASIC20.52■□□□□ 0.88
USP28Q96RU2 CADPS2-208ENST00000615869 6066 ntAPPRIS ALT1 TSL 5 BASIC20.52■□□□□ 0.88
USP28Q96RU2 RDH8-203ENST00000591589 1715 ntAPPRIS P1 TSL 1 (best) BASIC20.52■□□□□ 0.88
USP28Q96RU2 PHLDA1-202ENST00000602540 5741 ntAPPRIS ALT2 TSL 1 (best) BASIC20.52■□□□□ 0.88
Retrieved 100 of 98,524 protein–RNA pairs in 32.3 ms