Protein–RNA interactions for Protein: Q6ZMZ3

SYNE3, Nesprin-3, humanhuman

Predictions only

Length 975 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE3Q6ZMZ3 MID1IP1-201ENST00000336949 2536 ntAPPRIS P1 TSL 1 (best) BASIC21.17■□□□□ 0.98
SYNE3Q6ZMZ3 NUP153-202ENST00000537253 6030 ntAPPRIS ALT2 TSL 2 BASIC21.16■□□□□ 0.98
SYNE3Q6ZMZ3 LENG8-202ENST00000376514 5146 ntAPPRIS ALT2 TSL 5 BASIC21.16■□□□□ 0.98
SYNE3Q6ZMZ3 C18orf63-201ENST00000579455 5127 ntAPPRIS P1 TSL 1 (best) BASIC21.16■□□□□ 0.98
SYNE3Q6ZMZ3 LYSMD4-201ENST00000332728 2847 ntTSL 4 BASIC21.16■□□□□ 0.98
SYNE3Q6ZMZ3 PCBP3-205ENST00000400310 2168 ntTSL 2 BASIC21.16■□□□□ 0.98
SYNE3Q6ZMZ3 CCDC7-203ENST00000362006 2133 ntAPPRIS P2 TSL 1 (best) BASIC21.16■□□□□ 0.98
SYNE3Q6ZMZ3 STK4-201ENST00000372801 2038 ntTSL 2 BASIC21.16■□□□□ 0.98
SYNE3Q6ZMZ3 PMAIP1-202ENST00000316660 1948 ntAPPRIS P1 TSL 1 (best) BASIC21.16■□□□□ 0.98
SYNE3Q6ZMZ3 MAGEA6-201ENST00000329342 1740 ntAPPRIS P1 TSL 1 (best) BASIC21.16■□□□□ 0.98
SYNE3Q6ZMZ3 MAGEA3-201ENST00000370278 1724 ntAPPRIS P1 TSL 1 (best) BASIC21.16■□□□□ 0.98
SYNE3Q6ZMZ3 STK25-201ENST00000316586 4619 ntAPPRIS P1 TSL 1 (best) BASIC21.16■□□□□ 0.98
SYNE3Q6ZMZ3 FASTK-202ENST00000353841 1402 ntTSL 1 (best) BASIC21.16■□□□□ 0.98
SYNE3Q6ZMZ3 LINC00167-201ENST00000530583 1419 ntBASIC21.16■□□□□ 0.98
SYNE3Q6ZMZ3 SYNE4-201ENST00000324444 1354 ntAPPRIS P3 TSL 5 BASIC21.16■□□□□ 0.98
SYNE3Q6ZMZ3 GSTM4-201ENST00000326729 1321 ntTSL 1 (best) BASIC21.16■□□□□ 0.98
SYNE3Q6ZMZ3 TBPL1-203ENST00000367871 808 ntTSL 2 BASIC21.16■□□□□ 0.98
SYNE3Q6ZMZ3 CD1E-210ENST00000368165 1003 ntAPPRIS ALT2 TSL 1 (best) BASIC21.16■□□□□ 0.98
SYNE3Q6ZMZ3 DUSP15-203ENST00000375966 1077 ntTSL 3 BASIC21.16■□□□□ 0.98
SYNE3Q6ZMZ3 DUSP15-204ENST00000398083 1212 ntTSL 5 BASIC21.16■□□□□ 0.98
SYNE3Q6ZMZ3 PLPP5-202ENST00000422581 853 ntTSL 1 (best) BASIC21.16■□□□□ 0.98
SYNE3Q6ZMZ3 AC092159.3-201ENST00000439196 571 ntTSL 4 BASIC21.16■□□□□ 0.98
SYNE3Q6ZMZ3 CD1E-214ENST00000452291 745 ntTSL 1 (best) BASIC21.16■□□□□ 0.98
SYNE3Q6ZMZ3 GFOD2-207ENST00000602855 819 ntTSL 3 BASIC21.16■□□□□ 0.98
SYNE3Q6ZMZ3 ZDHHC20-202ENST00000382466 5338 ntAPPRIS P3 TSL 1 (best) BASIC21.16■□□□□ 0.98
SYNE3Q6ZMZ3 CCDC157-201ENST00000338306 3001 ntAPPRIS P3 TSL 5 BASIC21.16■□□□□ 0.98
SYNE3Q6ZMZ3 LGI4-201ENST00000310123 2814 ntAPPRIS P1 TSL 1 (best) BASIC21.16■□□□□ 0.98
SYNE3Q6ZMZ3 AC005332.8-201ENST00000622750 2735 ntBASIC21.16■□□□□ 0.98
SYNE3Q6ZMZ3 RHOBTB1-201ENST00000337910 4473 ntAPPRIS P1 TSL 1 (best) BASIC21.16■□□□□ 0.98
SYNE3Q6ZMZ3 GBGT1-203ENST00000372040 1980 ntAPPRIS P1 TSL 1 (best) BASIC21.16■□□□□ 0.98
SYNE3Q6ZMZ3 TPRA1-204ENST00000450633 1865 ntAPPRIS P1 TSL 1 (best) BASIC21.15■□□□□ 0.98
SYNE3Q6ZMZ3 ACP5-201ENST00000218758 1630 ntAPPRIS P1 TSL 1 (best) BASIC21.15■□□□□ 0.98
SYNE3Q6ZMZ3 APOLD1-202ENST00000356591 4646 ntAPPRIS P1 TSL 1 (best) BASIC21.15■□□□□ 0.98
SYNE3Q6ZMZ3 NIPAL2-201ENST00000341166 4581 ntTSL 2 BASIC21.15■□□□□ 0.98
SYNE3Q6ZMZ3 TADA3-201ENST00000301964 2355 ntAPPRIS P1 TSL 1 (best) BASIC21.15■□□□□ 0.98
SYNE3Q6ZMZ3 RALGPS1-208ENST00000424082 2362 ntTSL 2 BASIC21.15■□□□□ 0.98
SYNE3Q6ZMZ3 AL353692.3-201ENST00000407031 1396 ntBASIC21.15■□□□□ 0.98
SYNE3Q6ZMZ3 SUSD4-203ENST00000344029 1056 ntTSL 1 (best) BASIC21.15■□□□□ 0.98
SYNE3Q6ZMZ3 LCN8-201ENST00000371688 867 ntAPPRIS P2 TSL 1 (best) BASIC21.15■□□□□ 0.98
SYNE3Q6ZMZ3 AANAT-202ENST00000392492 1005 ntAPPRIS P1 TSL 1 (best) BASIC21.15■□□□□ 0.98
SYNE3Q6ZMZ3 SNCB-202ENST00000393693 1234 ntAPPRIS P1 TSL 1 (best) BASIC21.15■□□□□ 0.98
SYNE3Q6ZMZ3 TSPY12P-201ENST00000421279 868 ntBASIC21.15■□□□□ 0.98
SYNE3Q6ZMZ3 MAGI2-AS3-203ENST00000424477 520 ntTSL 4 BASIC21.15■□□□□ 0.98
SYNE3Q6ZMZ3 AP001625.2-201ENST00000442605 575 ntTSL 2 BASIC21.15■□□□□ 0.98
SYNE3Q6ZMZ3 LINC02106-201ENST00000506534 606 ntTSL 2 BASIC21.15■□□□□ 0.98
SYNE3Q6ZMZ3 DUTP2-201ENST00000519164 463 ntBASIC21.15■□□□□ 0.98
SYNE3Q6ZMZ3 AC079031.1-201ENST00000542627 1035 ntTSL 3 BASIC21.15■□□□□ 0.98
SYNE3Q6ZMZ3 AC092118.1-202ENST00000568697 718 ntTSL 3 BASIC21.15■□□□□ 0.98
SYNE3Q6ZMZ3 AC010331.1-201ENST00000611423 582 ntBASIC21.15■□□□□ 0.98
SYNE3Q6ZMZ3 GXYLT1P4-201ENST00000613576 1192 ntBASIC21.15■□□□□ 0.98
SYNE3Q6ZMZ3 SIGLEC6-203ENST00000359982 1811 ntAPPRIS ALT2 TSL 2 BASIC21.15■□□□□ 0.98
SYNE3Q6ZMZ3 WDR59-202ENST00000536050 1752 ntTSL 2 BASIC21.15■□□□□ 0.98
SYNE3Q6ZMZ3 PAK4-209ENST00000599470 1715 ntTSL 1 (best) BASIC21.15■□□□□ 0.98
SYNE3Q6ZMZ3 WIPI2-201ENST00000288828 4476 ntTSL 1 (best) BASIC21.15■□□□□ 0.98
SYNE3Q6ZMZ3 SLC44A3-201ENST00000271227 2388 ntAPPRIS P1 TSL 1 (best) BASIC21.15■□□□□ 0.98
SYNE3Q6ZMZ3 AC090206.1-201ENST00000615734 1678 ntTSL 5 BASIC21.15■□□□□ 0.98
SYNE3Q6ZMZ3 AC132938.6-201ENST00000623828 1655 ntBASIC21.15■□□□□ 0.98
SYNE3Q6ZMZ3 AC068880.1-201ENST00000507289 2297 ntBASIC21.15■□□□□ 0.98
SYNE3Q6ZMZ3 BEGAIN-211ENST00000637646 2911 ntTSL 5 BASIC21.15■□□□□ 0.98
SYNE3Q6ZMZ3 TMEM222-201ENST00000374076 1599 ntAPPRIS P2 TSL 1 (best) BASIC21.14■□□□□ 0.98
SYNE3Q6ZMZ3 RAB4A-205ENST00000618010 2799 ntTSL 3 BASIC21.14■□□□□ 0.98
SYNE3Q6ZMZ3 ADAMTS16-203ENST00000511368 2682 ntTSL 1 (best) BASIC21.14■□□□□ 0.98
SYNE3Q6ZMZ3 NDRG2-208ENST00000397851 2022 ntAPPRIS P4 TSL 2 BASIC21.14■□□□□ 0.98
SYNE3Q6ZMZ3 ZIC3-202ENST00000370606 1968 ntTSL 5 BASIC21.14■□□□□ 0.98
SYNE3Q6ZMZ3 TOP1MT-218ENST00000523676 1982 ntTSL 5 BASIC21.14■□□□□ 0.98
SYNE3Q6ZMZ3 ZZZ3-201ENST00000370798 2468 ntTSL 1 (best) BASIC21.14■□□□□ 0.98
SYNE3Q6ZMZ3 AKR1A1-214ENST00000621846 1360 ntAPPRIS P1 TSL 5 BASIC21.14■□□□□ 0.98
SYNE3Q6ZMZ3 STXBP2-201ENST00000221283 1876 ntAPPRIS P3 TSL 1 (best) BASIC21.14■□□□□ 0.97
SYNE3Q6ZMZ3 RPRD1A-201ENST00000357384 1850 ntAPPRIS P1 TSL 5 BASIC21.14■□□□□ 0.97
SYNE3Q6ZMZ3 SMIM24-201ENST00000215531 1329 ntAPPRIS P2 TSL 1 (best) BASIC21.14■□□□□ 0.97
SYNE3Q6ZMZ3 EXOSC5-201ENST00000221233 1118 ntAPPRIS P1 TSL 1 (best) BASIC21.14■□□□□ 0.97
SYNE3Q6ZMZ3 BAALC-202ENST00000306391 243 ntTSL 5 BASIC21.14■□□□□ 0.97
SYNE3Q6ZMZ3 ZNF575-201ENST00000314228 1298 ntAPPRIS P1 TSL 2 BASIC21.14■□□□□ 0.97
SYNE3Q6ZMZ3 BAALC-204ENST00000330955 222 ntTSL 5 BASIC21.14■□□□□ 0.97
SYNE3Q6ZMZ3 GPX4-201ENST00000354171 919 ntAPPRIS P2 TSL 1 (best) BASIC21.14■□□□□ 0.97
SYNE3Q6ZMZ3 ZNF32-201ENST00000374433 1137 ntAPPRIS P1 TSL 1 (best) BASIC21.14■□□□□ 0.97
SYNE3Q6ZMZ3 DDT-202ENST00000398344 713 ntAPPRIS P1 TSL 1 (best) BASIC21.14■□□□□ 0.97
SYNE3Q6ZMZ3 DDT-203ENST00000403754 569 ntTSL 3 BASIC21.14■□□□□ 0.97
SYNE3Q6ZMZ3 DDT-206ENST00000430101 573 ntTSL 2 BASIC21.14■□□□□ 0.97
SYNE3Q6ZMZ3 AC005091.1-201ENST00000441955 1190 ntTSL 3 BASIC21.14■□□□□ 0.97
SYNE3Q6ZMZ3 AP006284.1-202ENST00000527113 527 ntTSL 4 BASIC21.14■□□□□ 0.97
SYNE3Q6ZMZ3 C12orf76-204ENST00000547573 607 ntTSL 3 BASIC21.14■□□□□ 0.97
SYNE3Q6ZMZ3 MRPL52-215ENST00000556840 398 ntTSL 2 BASIC21.14■□□□□ 0.97
SYNE3Q6ZMZ3 MNT-208ENST00000575394 606 ntTSL 4 BASIC21.14■□□□□ 0.97
SYNE3Q6ZMZ3 SLC22A18-203ENST00000380574 1755 ntAPPRIS P1 TSL 1 (best) BASIC21.14■□□□□ 0.97
SYNE3Q6ZMZ3 ZNF131-206ENST00000505606 3209 ntAPPRIS P1 TSL 5 BASIC21.14■□□□□ 0.97
SYNE3Q6ZMZ3 HPS3-202ENST00000460120 2745 ntTSL 2 BASIC21.14■□□□□ 0.97
SYNE3Q6ZMZ3 ISY1-201ENST00000273541 1704 ntTSL 1 (best) BASIC21.14■□□□□ 0.97
SYNE3Q6ZMZ3 MEN1-203ENST00000337652 3162 ntAPPRIS P3 TSL 5 BASIC21.14■□□□□ 0.97
SYNE3Q6ZMZ3 TBC1D4-202ENST00000377636 6364 ntAPPRIS P3 TSL 2 BASIC21.14■□□□□ 0.97
SYNE3Q6ZMZ3 AC026471.1-201ENST00000564629 3026 ntBASIC21.14■□□□□ 0.97
SYNE3Q6ZMZ3 ARHGEF2-204ENST00000368315 1645 ntTSL 5 BASIC21.14■□□□□ 0.97
SYNE3Q6ZMZ3 MRPL10-203ENST00000414011 1622 ntTSL 3 BASIC21.14■□□□□ 0.97
SYNE3Q6ZMZ3 Z83836.1-201ENST00000624605 1642 ntBASIC21.14■□□□□ 0.97
SYNE3Q6ZMZ3 SMPD3-211ENST00000568373 2073 ntTSL 1 (best) BASIC21.14■□□□□ 0.97
SYNE3Q6ZMZ3 NPEPL1-204ENST00000525967 1917 ntTSL 1 (best) BASIC21.14■□□□□ 0.97
SYNE3Q6ZMZ3 AP000997.3-201ENST00000623333 2250 ntBASIC21.13■□□□□ 0.97
SYNE3Q6ZMZ3 ACOT7-202ENST00000377842 1813 ntAPPRIS ALT2 TSL 1 (best) BASIC21.13■□□□□ 0.97
SYNE3Q6ZMZ3 TMPRSS9-205ENST00000613480 2568 ntTSL 1 (best) BASIC21.13■□□□□ 0.97
SYNE3Q6ZMZ3 PCGF3-201ENST00000362003 5685 ntAPPRIS P1 TSL 5 BASIC21.13■□□□□ 0.97
Retrieved 100 of 98,524 protein–RNA pairs in 40.7 ms