Protein–RNA interactions for Protein: P25940

COL5A3, Collagen alpha-3(V) chain, humanhuman

Predicted RBP Predictions only

Length 1,745 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL5A3P25940 PDP1-208ENST00000520728 2554 ntAPPRIS P3 TSL 1 (best) BASIC22.48■■□□□ 1.19
COL5A3P25940 TECR-201ENST00000215567 1171 ntAPPRIS P1 TSL 1 (best) BASIC22.48■■□□□ 1.19
COL5A3P25940 ZNF81-201ENST00000334937 610 ntTSL 1 (best) BASIC22.48■■□□□ 1.19
COL5A3P25940 ICOSLG-201ENST00000344330 1009 ntAPPRIS ALT2 TSL 1 (best) BASIC22.48■■□□□ 1.19
COL5A3P25940 RPS9-203ENST00000391752 772 ntAPPRIS P1 TSL 2 BASIC22.48■■□□□ 1.19
COL5A3P25940 THAP7-202ENST00000399133 1144 ntAPPRIS P1 TSL 2 BASIC22.48■■□□□ 1.19
COL5A3P25940 SWI5-205ENST00000495313 466 ntAPPRIS ALT2 TSL 3 BASIC22.48■■□□□ 1.19
COL5A3P25940 INHA-201ENST00000243786 1468 ntAPPRIS P1 TSL 1 (best) BASIC22.48■■□□□ 1.19
COL5A3P25940 POLD3-203ENST00000527458 2122 ntTSL 1 (best) BASIC22.48■■□□□ 1.19
COL5A3P25940 SLC12A9-202ENST00000415287 1912 ntTSL 1 (best) BASIC22.48■■□□□ 1.19
COL5A3P25940 TMEM225B-202ENST00000431679 1314 ntAPPRIS P1 TSL 5 BASIC22.48■■□□□ 1.19
COL5A3P25940 KLK5-203ENST00000593428 1365 ntAPPRIS P1 TSL 1 (best) BASIC22.47■■□□□ 1.19
COL5A3P25940 CCDC88C-203ENST00000389856 1641 ntTSL 1 (best) BASIC22.47■■□□□ 1.19
COL5A3P25940 GHRHR-205ENST00000409904 1613 ntTSL 1 (best) BASIC22.47■■□□□ 1.19
COL5A3P25940 USP21-203ENST00000368002 2342 ntAPPRIS P1 TSL 1 (best) BASIC22.47■■□□□ 1.19
COL5A3P25940 PCDHA4-201ENST00000378125 2328 ntTSL 5 BASIC22.47■■□□□ 1.19
COL5A3P25940 RASGRP2-211ENST00000394432 2304 ntAPPRIS P2 TSL 1 (best) BASIC22.47■■□□□ 1.19
COL5A3P25940 AC055811.2-201ENST00000427497 1693 ntAPPRIS P1 TSL 1 (best) BASIC22.47■■□□□ 1.19
COL5A3P25940 XYLT2-203ENST00000507602 2107 ntTSL 2 BASIC22.47■■□□□ 1.19
COL5A3P25940 AC018445.3-201ENST00000624177 1945 ntBASIC22.47■■□□□ 1.19
COL5A3P25940 SGF29-201ENST00000317058 1153 ntAPPRIS P1 TSL 1 (best) BASIC22.47■■□□□ 1.19
COL5A3P25940 NDUFA4L2-201ENST00000393825 1186 ntAPPRIS P1 TSL 1 (best) BASIC22.47■■□□□ 1.19
COL5A3P25940 AL645939.2-201ENST00000427340 991 ntBASIC22.47■■□□□ 1.19
COL5A3P25940 PRSS29P-201ENST00000440800 595 ntBASIC22.47■■□□□ 1.19
COL5A3P25940 VN2R19P-201ENST00000442399 1052 ntBASIC22.47■■□□□ 1.19
COL5A3P25940 SNHG9-202ENST00000564014 471 ntBASIC22.47■■□□□ 1.19
COL5A3P25940 AP002472.1-201ENST00000577490 586 ntBASIC22.47■■□□□ 1.19
COL5A3P25940 OR5AH1P-202ENST00000597822 431 ntTSL 3 BASIC22.47■■□□□ 1.19
COL5A3P25940 GABRB2-206ENST00000520240 2030 ntAPPRIS P1 TSL 1 (best) BASIC22.47■■□□□ 1.19
COL5A3P25940 LRRC36-201ENST00000329956 2395 ntAPPRIS P1 TSL 1 (best) BASIC22.47■■□□□ 1.19
COL5A3P25940 MCU-201ENST00000357157 2874 ntTSL 1 (best) BASIC22.47■■□□□ 1.19
COL5A3P25940 SHROOM1-202ENST00000378676 2352 ntAPPRIS ALT2 TSL 5 BASIC22.47■■□□□ 1.19
COL5A3P25940 DMRT2-205ENST00000382255 2367 ntTSL 1 (best) BASIC22.47■■□□□ 1.19
COL5A3P25940 SULT1A1-204ENST00000395609 1871 ntAPPRIS P1 TSL 1 (best) BASIC22.47■■□□□ 1.19
COL5A3P25940 TPSAB1-202ENST00000461509 1357 ntAPPRIS ALT2 TSL 1 (best) BASIC22.47■■□□□ 1.19
COL5A3P25940 YTHDC2-207ENST00000515883 2629 ntTSL 1 (best) BASIC22.47■■□□□ 1.19
COL5A3P25940 BIN1-202ENST00000316724 2693 ntAPPRIS P4 TSL 1 (best) BASIC22.47■■□□□ 1.19
COL5A3P25940 LYRM9-203ENST00000460380 2196 ntTSL 2 BASIC22.47■■□□□ 1.19
COL5A3P25940 AP3S1-201ENST00000316788 1730 ntAPPRIS P1 TSL 1 (best) BASIC22.46■■□□□ 1.19
COL5A3P25940 PSRC1-203ENST00000369907 1717 ntAPPRIS P3 TSL 1 (best) BASIC22.46■■□□□ 1.19
COL5A3P25940 PSRC1-206ENST00000409267 1730 ntAPPRIS P3 TSL 5 BASIC22.46■■□□□ 1.19
COL5A3P25940 MID1IP1-201ENST00000336949 2536 ntAPPRIS P1 TSL 1 (best) BASIC22.46■■□□□ 1.19
COL5A3P25940 UBE2G1-204ENST00000572484 1514 ntTSL 5 BASIC22.46■■□□□ 1.19
COL5A3P25940 FAM72B-202ENST00000369390 2396 ntAPPRIS P1 TSL 1 (best) BASIC22.46■■□□□ 1.19
COL5A3P25940 LINC01786-201ENST00000434139 268 ntTSL 5 BASIC22.46■■□□□ 1.19
COL5A3P25940 AL390729.1-201ENST00000456651 587 ntTSL 2 BASIC22.46■■□□□ 1.19
COL5A3P25940 ZIC4-214ENST00000491672 925 ntTSL 4 BASIC22.46■■□□□ 1.19
COL5A3P25940 AC026191.1-201ENST00000491930 829 ntTSL 3 BASIC22.46■■□□□ 1.19
COL5A3P25940 DHRS4-205ENST00000558263 1089 ntTSL 5 BASIC22.46■■□□□ 1.19
COL5A3P25940 DHRS4L2-207ENST00000558753 556 ntTSL 2 BASIC22.46■■□□□ 1.19
COL5A3P25940 AC020558.1-201ENST00000583662 425 ntTSL 3 BASIC22.46■■□□□ 1.19
COL5A3P25940 AC068137.2-201ENST00000605408 478 ntBASIC22.46■■□□□ 1.19
COL5A3P25940 FSTL3-207ENST00000605925 748 ntTSL 4 BASIC22.46■■□□□ 1.19
COL5A3P25940 ZEB1-AS1-206ENST00000606250 573 ntTSL 5 BASIC22.46■■□□□ 1.19
COL5A3P25940 THOP1-205ENST00000586677 1872 ntTSL 2 BASIC22.46■■□□□ 1.19
COL5A3P25940 HSD3B7-202ENST00000297679 2172 ntAPPRIS P1 TSL 1 (best) BASIC22.46■■□□□ 1.19
COL5A3P25940 MOXD1-203ENST00000392401 2191 ntTSL 4 BASIC22.46■■□□□ 1.19
COL5A3P25940 NSUN5-201ENST00000252594 1672 ntAPPRIS ALT2 TSL 1 (best) BASIC22.46■■□□□ 1.19
COL5A3P25940 TUBA4B-203ENST00000490341 1380 ntAPPRIS P1 TSL 2 BASIC22.46■■□□□ 1.19
COL5A3P25940 PAQR4-201ENST00000293978 2644 ntTSL 2 BASIC22.46■■□□□ 1.19
COL5A3P25940 SHF-201ENST00000290894 2500 ntAPPRIS P3 TSL 2 BASIC22.46■■□□□ 1.19
COL5A3P25940 CDCA4-201ENST00000336219 2513 ntAPPRIS P1 TSL 1 (best) BASIC22.46■■□□□ 1.19
COL5A3P25940 TCTN1-204ENST00000397659 1885 ntAPPRIS P4 TSL 1 (best) BASIC22.46■■□□□ 1.19
COL5A3P25940 CASC2-205ENST00000454781 2216 ntTSL 1 (best) BASIC22.46■■□□□ 1.19
COL5A3P25940 TSPAN17-202ENST00000310032 2550 ntTSL 5 BASIC22.46■■□□□ 1.19
COL5A3P25940 AC009336.1-201ENST00000608941 1553 ntBASIC22.46■■□□□ 1.19
COL5A3P25940 SLC38A11-202ENST00000409058 1647 ntAPPRIS ALT2 TSL 5 BASIC22.46■■□□□ 1.19
COL5A3P25940 TMEM259-202ENST00000356663 2748 ntAPPRIS ALT2 TSL 1 (best) BASIC22.45■■□□□ 1.19
COL5A3P25940 ANP32E-201ENST00000369114 1048 ntTSL 3 BASIC22.45■■□□□ 1.19
COL5A3P25940 COX5BP2-201ENST00000392354 334 ntBASIC22.45■■□□□ 1.19
COL5A3P25940 CBR1-202ENST00000399191 838 ntTSL 3 BASIC22.45■■□□□ 1.19
COL5A3P25940 AP000695.1-201ENST00000429588 893 ntTSL 3 BASIC22.45■■□□□ 1.19
COL5A3P25940 OR7E47P-204ENST00000575924 449 ntBASIC22.45■■□□□ 1.19
COL5A3P25940 TBX18-206ENST00000606784 1230 ntTSL 1 (best) BASIC22.45■■□□□ 1.19
COL5A3P25940 SBDS-205ENST00000617799 953 ntAPPRIS ALT1 TSL 5 BASIC22.45■■□□□ 1.19
COL5A3P25940 STMN3-202ENST00000540534 2351 ntTSL 2 BASIC22.45■■□□□ 1.19
COL5A3P25940 CD1E-205ENST00000368160 1727 ntAPPRIS ALT2 TSL 1 (best) BASIC22.45■■□□□ 1.18
COL5A3P25940 PSTK-201ENST00000368887 1705 ntAPPRIS P2 TSL 1 (best) BASIC22.45■■□□□ 1.18
COL5A3P25940 AOC3-204ENST00000591562 2522 ntTSL 2 BASIC22.45■■□□□ 1.18
COL5A3P25940 ANAPC11-211ENST00000575195 1361 ntAPPRIS P1 TSL 2 BASIC22.45■■□□□ 1.18
COL5A3P25940 FAM43B-201ENST00000332947 2572 ntAPPRIS P1 BASIC22.45■■□□□ 1.18
COL5A3P25940 TNFRSF14-AS1-205ENST00000449660 1629 ntTSL 2 BASIC22.45■■□□□ 1.18
COL5A3P25940 TMED4-201ENST00000289577 2203 ntTSL 2 BASIC22.45■■□□□ 1.18
COL5A3P25940 TMEM145-201ENST00000301204 1768 ntAPPRIS P2 TSL 2 BASIC22.45■■□□□ 1.18
COL5A3P25940 ARMC12-201ENST00000288065 1169 ntTSL 1 (best) BASIC22.45■■□□□ 1.18
COL5A3P25940 FBXO44-205ENST00000376768 959 ntTSL 2 BASIC22.45■■□□□ 1.18
COL5A3P25940 EXOSC8-202ENST00000389704 1198 ntAPPRIS P1 TSL 1 (best) BASIC22.45■■□□□ 1.18
COL5A3P25940 AP002414.1-201ENST00000391405 1147 ntBASIC22.45■■□□□ 1.18
COL5A3P25940 AL035633.1-201ENST00000406139 838 ntBASIC22.45■■□□□ 1.18
COL5A3P25940 AL049612.1-201ENST00000427017 694 ntTSL 5 BASIC22.45■■□□□ 1.18
COL5A3P25940 HELT-204ENST00000515777 841 ntAPPRIS P4 TSL 1 (best) BASIC22.45■■□□□ 1.18
COL5A3P25940 AC109462.3-201ENST00000573934 613 ntBASIC22.45■■□□□ 1.18
COL5A3P25940 AC010615.2-202ENST00000597444 832 ntTSL 3 BASIC22.45■■□□□ 1.18
COL5A3P25940 AC091812.2-201ENST00000619081 385 ntBASIC22.45■■□□□ 1.18
COL5A3P25940 CLINT1-207ENST00000523908 2346 ntAPPRIS ALT1 TSL 1 (best) BASIC22.45■■□□□ 1.18
COL5A3P25940 CPQ-201ENST00000220763 1947 ntAPPRIS P1 TSL 1 (best) BASIC22.45■■□□□ 1.18
COL5A3P25940 KCNK9-203ENST00000520439 1441 ntAPPRIS P1 TSL 1 (best) BASIC22.45■■□□□ 1.18
COL5A3P25940 PEX13-204ENST00000444100 1533 ntTSL 1 (best) BASIC22.44■■□□□ 1.18
COL5A3P25940 RAB7A-203ENST00000482525 1589 ntTSL 1 (best) BASIC22.44■■□□□ 1.18
COL5A3P25940 FAM129C-201ENST00000332386 2222 ntAPPRIS ALT2 TSL 1 (best) BASIC22.44■■□□□ 1.18
Retrieved 100 of 98,524 protein–RNA pairs in 44.2 ms