Protein–RNA interactions for Protein: A8TX70

COL6A5, Collagen alpha-5(VI) chain, humanhuman

Predictions only

Length 2,615 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL6A5A8TX70 PLSCR3-212ENST00000576201 1965 ntAPPRIS P1 TSL 1 (best) BASIC13.83□□□□□ -0.2
COL6A5A8TX70 TRH-202ENST00000507066 1580 ntAPPRIS ALT1 TSL 5 BASIC13.82□□□□□ -0.2
COL6A5A8TX70 SUFU-201ENST00000369899 1839 ntTSL 1 (best) BASIC13.82□□□□□ -0.2
COL6A5A8TX70 NFYC-AS1-201ENST00000606277 1687 ntBASIC13.82□□□□□ -0.2
COL6A5A8TX70 TMEM44-201ENST00000330115 1278 ntTSL 1 (best) BASIC13.82□□□□□ -0.2
COL6A5A8TX70 ICOSLG-201ENST00000344330 1009 ntAPPRIS ALT2 TSL 1 (best) BASIC13.82□□□□□ -0.2
COL6A5A8TX70 WFDC3-204ENST00000372632 704 ntTSL 3 BASIC13.82□□□□□ -0.2
COL6A5A8TX70 AC124944.1-201ENST00000448113 625 ntTSL 2 BASIC13.82□□□□□ -0.2
COL6A5A8TX70 RIIAD1-201ENST00000326413 1772 ntTSL 2 BASIC13.82□□□□□ -0.2
COL6A5A8TX70 SLBP-201ENST00000318386 1635 ntAPPRIS ALT1 TSL 3 BASIC13.82□□□□□ -0.2
COL6A5A8TX70 SUSD1-202ENST00000374263 2973 ntAPPRIS ALT2 TSL 2 BASIC13.82□□□□□ -0.2
COL6A5A8TX70 GGN-201ENST00000334928 2239 ntAPPRIS P1 TSL 1 (best) BASIC13.82□□□□□ -0.2
COL6A5A8TX70 CSNK1D-204ENST00000398519 1580 ntTSL 5 BASIC13.82□□□□□ -0.2
COL6A5A8TX70 AC006116.8-202ENST00000587620 1550 ntBASIC13.82□□□□□ -0.2
COL6A5A8TX70 SDC1-203ENST00000403076 1523 ntTSL 1 (best) BASIC13.82□□□□□ -0.2
COL6A5A8TX70 HHIPL1-202ENST00000357223 2241 ntTSL 1 (best) BASIC13.82□□□□□ -0.2
COL6A5A8TX70 PRDX5-202ENST00000347941 463 ntTSL 1 (best) BASIC13.82□□□□□ -0.2
COL6A5A8TX70 CKLF-204ENST00000362093 412 ntAPPRIS ALT2 TSL 1 (best) BASIC13.82□□□□□ -0.2
COL6A5A8TX70 KRT17P7-201ENST00000451704 1104 ntBASIC13.82□□□□□ -0.2
COL6A5A8TX70 AL512638.1-201ENST00000457493 794 ntBASIC13.82□□□□□ -0.2
COL6A5A8TX70 RPS15P9-201ENST00000494093 319 ntBASIC13.82□□□□□ -0.2
COL6A5A8TX70 MIR4538-201ENST00000581377 78 ntBASIC13.82□□□□□ -0.2
COL6A5A8TX70 IRF8-203ENST00000563180 1394 ntTSL 1 (best) BASIC13.82□□□□□ -0.2
COL6A5A8TX70 ACY1-201ENST00000404366 1473 ntAPPRIS P1 TSL 1 (best) BASIC13.82□□□□□ -0.2
COL6A5A8TX70 TH-206ENST00000381178 1910 ntTSL 1 (best) BASIC13.82□□□□□ -0.2
COL6A5A8TX70 ATP6V1G2-205ENST00000303892 1588 ntAPPRIS P1 TSL 1 (best) BASIC13.82□□□□□ -0.2
COL6A5A8TX70 NDUFA10-203ENST00000404554 1557 ntTSL 5 BASIC13.82□□□□□ -0.2
COL6A5A8TX70 SDHAP2-201ENST00000455183 2001 ntBASIC13.82□□□□□ -0.2
COL6A5A8TX70 NR2C1-219ENST00000622476 1561 ntTSL 5 BASIC13.82□□□□□ -0.2
COL6A5A8TX70 HFE2-202ENST00000357836 2123 ntTSL 1 (best) BASIC13.82□□□□□ -0.2
COL6A5A8TX70 PLEKHG2-202ENST00000409797 2205 ntAPPRIS ALT2 TSL 2 BASIC13.82□□□□□ -0.2
COL6A5A8TX70 P3H4-202ENST00000393928 2601 ntAPPRIS P2 TSL 1 (best) BASIC13.82□□□□□ -0.2
COL6A5A8TX70 LYPLA2-205ENST00000374514 1810 ntAPPRIS P1 TSL 1 (best) BASIC13.81□□□□□ -0.2
COL6A5A8TX70 AC020907.5-201ENST00000624372 1936 ntBASIC13.81□□□□□ -0.2
COL6A5A8TX70 FIBP-201ENST00000338369 1261 ntTSL 1 (best) BASIC13.81□□□□□ -0.2
COL6A5A8TX70 CENPM-203ENST00000402338 1002 ntTSL 2 BASIC13.81□□□□□ -0.2
COL6A5A8TX70 GPS2P2-201ENST00000430745 888 ntBASIC13.81□□□□□ -0.2
COL6A5A8TX70 FAM185BP-201ENST00000443595 716 ntBASIC13.81□□□□□ -0.2
COL6A5A8TX70 AC092658.1-201ENST00000505836 891 ntBASIC13.81□□□□□ -0.2
COL6A5A8TX70 MRPS23-202ENST00000578444 580 ntTSL 2 BASIC13.81□□□□□ -0.2
COL6A5A8TX70 Z84492.1-201ENST00000606589 408 ntAPPRIS P1 TSL 3 BASIC13.81□□□□□ -0.2
COL6A5A8TX70 AC009118.2-201ENST00000613275 655 ntBASIC13.81□□□□□ -0.2
COL6A5A8TX70 MIR6787-201ENST00000616675 61 ntBASIC13.81□□□□□ -0.2
COL6A5A8TX70 CGREF1-205ENST00000404694 1376 ntAPPRIS ALT2 TSL 2 BASIC13.81□□□□□ -0.2
COL6A5A8TX70 INHA-201ENST00000243786 1468 ntAPPRIS P1 TSL 1 (best) BASIC13.81□□□□□ -0.2
COL6A5A8TX70 AQP5-201ENST00000293599 1450 ntAPPRIS P1 TSL 1 (best) BASIC13.81□□□□□ -0.2
COL6A5A8TX70 AC005920.1-201ENST00000501718 2054 ntTSL 2 BASIC13.81□□□□□ -0.2
COL6A5A8TX70 BID-215ENST00000622694 2199 ntAPPRIS P1 TSL 1 (best) BASIC13.81□□□□□ -0.2
COL6A5A8TX70 STEAP2-204ENST00000394626 2456 ntTSL 2 BASIC13.81□□□□□ -0.2
COL6A5A8TX70 MRGPRG-AS1-201ENST00000420873 1818 ntTSL 2 BASIC13.81□□□□□ -0.2
COL6A5A8TX70 OCSTAMP-201ENST00000279028 2043 ntAPPRIS P1 TSL 5 BASIC13.81□□□□□ -0.2
COL6A5A8TX70 MARC2-202ENST00000366913 2134 ntAPPRIS P1 TSL 1 (best) BASIC13.81□□□□□ -0.2
COL6A5A8TX70 EEF1D-204ENST00000423316 2378 ntAPPRIS P4 TSL 5 BASIC13.81□□□□□ -0.2
COL6A5A8TX70 CIC-201ENST00000160740 6111 ntAPPRIS ALT1 TSL 5 BASIC13.81□□□□□ -0.2
COL6A5A8TX70 CHEK2-202ENST00000348295 1771 ntTSL 5 BASIC13.81□□□□□ -0.2
COL6A5A8TX70 ZNF843-203ENST00000618063 1765 ntAPPRIS P2 TSL 1 (best) BASIC13.81□□□□□ -0.2
COL6A5A8TX70 B9D1-209ENST00000477478 1353 ntTSL 3 BASIC13.81□□□□□ -0.2
COL6A5A8TX70 USE1-201ENST00000263897 843 ntAPPRIS P2 TSL 1 (best) BASIC13.81□□□□□ -0.2
COL6A5A8TX70 LRRC37A5P-201ENST00000374304 1103 ntTSL 1 (best) BASIC13.81□□□□□ -0.2
COL6A5A8TX70 MIR149-201ENST00000384879 89 ntBASIC13.81□□□□□ -0.2
COL6A5A8TX70 SPDYE11-202ENST00000450699 704 ntBASIC13.81□□□□□ -0.2
COL6A5A8TX70 SPDYE9P-201ENST00000570642 692 ntBASIC13.81□□□□□ -0.2
COL6A5A8TX70 TRAPPC6A-204ENST00000588062 695 ntTSL 2 BASIC13.81□□□□□ -0.2
COL6A5A8TX70 SPDYE10P-202ENST00000612005 668 ntBASIC13.81□□□□□ -0.2
COL6A5A8TX70 SPDYE8P-202ENST00000612377 668 ntBASIC13.81□□□□□ -0.2
COL6A5A8TX70 TPCN2-205ENST00000542467 2000 ntTSL 2 BASIC13.81□□□□□ -0.2
COL6A5A8TX70 OGG1-217ENST00000449570 1948 ntTSL 5 BASIC13.81□□□□□ -0.2
COL6A5A8TX70 FASTK-202ENST00000353841 1402 ntTSL 1 (best) BASIC13.81□□□□□ -0.2
COL6A5A8TX70 SPOCK3-217ENST00000511269 1768 ntAPPRIS P3 TSL 2 BASIC13.81□□□□□ -0.2
COL6A5A8TX70 TNNT3-204ENST00000381558 1258 ntAPPRIS ALT2 TSL 5 BASIC13.8□□□□□ -0.2
COL6A5A8TX70 MIR658-201ENST00000385210 100 ntBASIC13.8□□□□□ -0.2
COL6A5A8TX70 NFKBIB-202ENST00000392079 991 ntTSL 5 BASIC13.8□□□□□ -0.2
COL6A5A8TX70 AC124057.1-201ENST00000433035 404 ntTSL 5 BASIC13.8□□□□□ -0.2
COL6A5A8TX70 PSEN2-206ENST00000472139 1163 ntTSL 5 BASIC13.8□□□□□ -0.2
COL6A5A8TX70 KRT8P48-201ENST00000515599 1220 ntBASIC13.8□□□□□ -0.2
COL6A5A8TX70 AC092552.1-201ENST00000547243 906 ntBASIC13.8□□□□□ -0.2
COL6A5A8TX70 AC009093.8-202ENST00000562902 677 ntTSL 2 BASIC13.8□□□□□ -0.2
COL6A5A8TX70 TP53TG3HP-202ENST00000569755 579 ntBASIC13.8□□□□□ -0.2
COL6A5A8TX70 GPR182-203ENST00000622922 591 ntBASIC13.8□□□□□ -0.2
COL6A5A8TX70 ACD-201ENST00000219251 2052 ntAPPRIS P3 TSL 2 BASIC13.8□□□□□ -0.2
COL6A5A8TX70 DBNL-217ENST00000468694 2068 ntAPPRIS ALT2 TSL 2 BASIC13.8□□□□□ -0.2
COL6A5A8TX70 IRX4-201ENST00000231357 2221 ntAPPRIS P1 TSL 1 (best) BASIC13.8□□□□□ -0.2
COL6A5A8TX70 TTC9-201ENST00000256367 5217 ntAPPRIS P1 TSL 1 (best) BASIC13.8□□□□□ -0.2
COL6A5A8TX70 IL25-201ENST00000329715 1315 ntAPPRIS P3 TSL 1 (best) BASIC13.8□□□□□ -0.2
COL6A5A8TX70 PSMD8-207ENST00000592035 1581 ntTSL 1 (best) BASIC13.8□□□□□ -0.2
COL6A5A8TX70 TPGS2-219ENST00000593035 1727 ntAPPRIS ALT2 TSL 2 BASIC13.8□□□□□ -0.2
COL6A5A8TX70 AL390879.2-201ENST00000424306 2222 ntTSL 2 BASIC13.8□□□□□ -0.2
COL6A5A8TX70 CGB3-201ENST00000357383 877 ntAPPRIS P1 TSL 1 (best) BASIC13.8□□□□□ -0.2
COL6A5A8TX70 CGB2-201ENST00000359342 627 ntAPPRIS P1 TSL 1 (best) BASIC13.8□□□□□ -0.2
COL6A5A8TX70 FAM162A-202ENST00000469967 1015 ntTSL 2 BASIC13.8□□□□□ -0.2
COL6A5A8TX70 AC004890.2-204ENST00000481968 304 ntBASIC13.8□□□□□ -0.2
COL6A5A8TX70 AC009908.1-201ENST00000523030 412 ntTSL 3 BASIC13.8□□□□□ -0.2
COL6A5A8TX70 KRTAP5-9-201ENST00000528743 1136 ntAPPRIS P1 BASIC13.8□□□□□ -0.2
COL6A5A8TX70 BSG-214ENST00000614867 960 ntTSL 3 BASIC13.8□□□□□ -0.2
COL6A5A8TX70 SBDS-205ENST00000617799 953 ntAPPRIS ALT1 TSL 5 BASIC13.8□□□□□ -0.2
COL6A5A8TX70 CYP1B1-207ENST00000614273 2174 ntAPPRIS P1 TSL 5 BASIC13.8□□□□□ -0.2
COL6A5A8TX70 ACTR5-201ENST00000243903 2565 ntAPPRIS P1 TSL 1 (best) BASIC13.8□□□□□ -0.2
COL6A5A8TX70 TDRD10-202ENST00000368482 2331 ntAPPRIS P3 TSL 1 (best) BASIC13.8□□□□□ -0.2
COL6A5A8TX70 NOTCH2NL-201ENST00000362074 1874 ntAPPRIS P2 TSL 1 (best) BASIC13.8□□□□□ -0.2
COL6A5A8TX70 HLA-A-203ENST00000376809 1611 ntAPPRIS P1 BASIC13.8□□□□□ -0.2
Retrieved 100 of 98,524 protein–RNA pairs in 49.4 ms