Protein–RNA interactions for Protein: Q99626

CDX2, Homeobox protein CDX-2, humanhuman

Predicted RBP Predictions only

Length 313 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CDX2Q99626 PCID2-202ENST00000337344 1898 ntAPPRIS P1 TSL 2 BASIC18.68■□□□□ 0.58
CDX2Q99626 AC105285.1-202ENST00000499322 1866 ntTSL 1 (best) BASIC18.68■□□□□ 0.58
CDX2Q99626 MSANTD1-203ENST00000507492 2289 ntAPPRIS ALT2 TSL 1 (best) BASIC18.68■□□□□ 0.58
CDX2Q99626 SLCO3A1-202ENST00000424469 2705 ntTSL 1 (best) BASIC18.68■□□□□ 0.58
CDX2Q99626 TCF3P1-201ENST00000423021 1937 ntBASIC18.68■□□□□ 0.58
CDX2Q99626 LINC02415-201ENST00000508505 1315 ntTSL 1 (best) BASIC18.68■□□□□ 0.58
CDX2Q99626 BMP2K-204ENST00000502871 3195 ntAPPRIS P3 TSL 1 (best) BASIC18.68■□□□□ 0.58
CDX2Q99626 VSX1-202ENST00000376709 2192 ntAPPRIS P1 TSL 1 (best) BASIC18.68■□□□□ 0.58
CDX2Q99626 TCAIM-203ENST00000396078 2178 ntTSL 1 (best) BASIC18.68■□□□□ 0.58
CDX2Q99626 MVK-201ENST00000228510 1956 ntAPPRIS P1 TSL 1 (best) BASIC18.68■□□□□ 0.58
CDX2Q99626 PLSCR3-212ENST00000576201 1965 ntAPPRIS P1 TSL 1 (best) BASIC18.68■□□□□ 0.58
CDX2Q99626 SOX8-201ENST00000293894 3049 ntAPPRIS P1 TSL 1 (best) BASIC18.68■□□□□ 0.58
CDX2Q99626 NTN1-201ENST00000173229 5954 ntAPPRIS P1 TSL 1 (best) BASIC18.68■□□□□ 0.58
CDX2Q99626 LINC00271-201ENST00000421378 1580 ntTSL 1 (best) BASIC18.68■□□□□ 0.58
CDX2Q99626 ADK-206ENST00000541550 2222 ntTSL 2 BASIC18.68■□□□□ 0.58
CDX2Q99626 ST7-201ENST00000265437 2899 ntTSL 1 (best) BASIC18.67■□□□□ 0.58
CDX2Q99626 GNA14-201ENST00000341700 2482 ntAPPRIS P1 TSL 1 (best) BASIC18.67■□□□□ 0.58
CDX2Q99626 GRB10-206ENST00000402497 2289 ntTSL 5 BASIC18.67■□□□□ 0.58
CDX2Q99626 MRGPRF-203ENST00000441623 2282 ntAPPRIS P1 TSL 2 BASIC18.67■□□□□ 0.58
CDX2Q99626 PRR23B-201ENST00000329447 1896 ntAPPRIS P1 BASIC18.67■□□□□ 0.58
CDX2Q99626 VEGFA-206ENST00000372077 2834 ntTSL 1 (best) BASIC18.67■□□□□ 0.58
CDX2Q99626 MOK-201ENST00000361847 1940 ntAPPRIS P3 TSL 1 (best) BASIC18.67■□□□□ 0.58
CDX2Q99626 BIN1-203ENST00000346226 2401 ntAPPRIS ALT2 TSL 1 (best) BASIC18.67■□□□□ 0.58
CDX2Q99626 TOMM5-201ENST00000321301 751 ntAPPRIS P1 TSL 1 (best) BASIC18.67■□□□□ 0.58
CDX2Q99626 LINC01116-202ENST00000339037 838 ntTSL 3 BASIC18.67■□□□□ 0.58
CDX2Q99626 SELENOH-201ENST00000388857 833 ntAPPRIS P2 TSL 1 (best) BASIC18.67■□□□□ 0.58
CDX2Q99626 RPL30-202ENST00000396070 440 ntTSL 2 BASIC18.67■□□□□ 0.58
CDX2Q99626 AC096633.1-201ENST00000422446 749 ntBASIC18.67■□□□□ 0.58
CDX2Q99626 AC026202.2-201ENST00000439325 672 ntTSL 2 BASIC18.67■□□□□ 0.58
CDX2Q99626 SERBP1P5-201ENST00000510079 1181 ntBASIC18.67■□□□□ 0.58
CDX2Q99626 IL18BP-211ENST00000531053 853 ntAPPRIS ALT2 TSL 2 BASIC18.67■□□□□ 0.58
CDX2Q99626 COX5A-203ENST00000564811 568 ntAPPRIS P1 TSL 1 (best) BASIC18.67■□□□□ 0.58
CDX2Q99626 MARVELD3-206ENST00000567566 850 ntAPPRIS ALT2 TSL 1 (best) BASIC18.67■□□□□ 0.58
CDX2Q99626 PGLYRP1-201ENST00000008938 720 ntAPPRIS P1 TSL 1 (best) BASIC18.67■□□□□ 0.58
CDX2Q99626 DBNDD2-204ENST00000372712 1537 ntAPPRIS P1 TSL 5 BASIC18.67■□□□□ 0.58
CDX2Q99626 VGLL3-201ENST00000383698 2475 ntAPPRIS ALT2 TSL 1 (best) BASIC18.67■□□□□ 0.58
CDX2Q99626 SNX17-201ENST00000233575 2044 ntAPPRIS P1 TSL 1 (best) BASIC18.67■□□□□ 0.58
CDX2Q99626 GID4-202ENST00000376345 1391 ntTSL 3 BASIC18.67■□□□□ 0.58
CDX2Q99626 MRM1-204ENST00000614766 1857 ntAPPRIS P1 TSL 1 (best) BASIC18.67■□□□□ 0.58
CDX2Q99626 TMPRSS12-201ENST00000398458 1450 ntAPPRIS P1 TSL 1 (best) BASIC18.66■□□□□ 0.58
CDX2Q99626 PPP1R13B-201ENST00000202556 4958 ntAPPRIS P1 TSL 1 (best) BASIC18.66■□□□□ 0.58
CDX2Q99626 FAM57A-201ENST00000301324 2013 ntTSL 1 (best) BASIC18.66■□□□□ 0.58
CDX2Q99626 RAB1B-201ENST00000311481 2007 ntAPPRIS P1 TSL 1 (best) BASIC18.66■□□□□ 0.58
CDX2Q99626 CBWD1-201ENST00000314367 1771 ntTSL 1 (best) BASIC18.66■□□□□ 0.58
CDX2Q99626 MSANTD2-202ENST00000374979 2349 ntAPPRIS P1 TSL 1 (best) BASIC18.66■□□□□ 0.58
CDX2Q99626 IQCE-204ENST00000404984 2086 ntAPPRIS ALT2 TSL 5 BASIC18.66■□□□□ 0.58
CDX2Q99626 DBNL-217ENST00000468694 2068 ntAPPRIS ALT2 TSL 2 BASIC18.66■□□□□ 0.58
CDX2Q99626 CD40-207ENST00000620709 1522 ntTSL 1 (best) BASIC18.66■□□□□ 0.58
CDX2Q99626 PNKD-201ENST00000248451 758 ntTSL 1 (best) BASIC18.66■□□□□ 0.58
CDX2Q99626 TTC31-205ENST00000442235 958 ntTSL 1 (best) BASIC18.66■□□□□ 0.58
CDX2Q99626 AL592309.1-201ENST00000443127 649 ntBASIC18.66■□□□□ 0.58
CDX2Q99626 GPR53P-205ENST00000457298 1084 ntBASIC18.66■□□□□ 0.58
CDX2Q99626 S100A2-206ENST00000497140 697 ntTSL 2 BASIC18.66■□□□□ 0.58
CDX2Q99626 VASH2-211ENST00000517399 1068 ntAPPRIS ALT1 TSL 1 (best) BASIC18.66■□□□□ 0.58
CDX2Q99626 TMSB15B-204ENST00000540220 665 ntAPPRIS P1 TSL 1 (best) BASIC18.66■□□□□ 0.58
CDX2Q99626 BLOC1S6-202ENST00000562384 494 ntTSL 4 BASIC18.66■□□□□ 0.58
CDX2Q99626 TMSB15B-205ENST00000563257 590 ntTSL 4 BASIC18.66■□□□□ 0.58
CDX2Q99626 COQ9-214ENST00000567933 882 ntTSL 3 BASIC18.66■□□□□ 0.58
CDX2Q99626 AC138474.1-201ENST00000586630 523 ntTSL 3 BASIC18.66■□□□□ 0.58
CDX2Q99626 DBI-211ENST00000627093 554 ntTSL 1 (best) BASIC18.66■□□□□ 0.58
CDX2Q99626 ZDHHC14-204ENST00000414563 3134 ntTSL 1 (best) BASIC18.66■□□□□ 0.58
CDX2Q99626 ACAP3-201ENST00000353662 2280 ntTSL 1 (best) BASIC18.66■□□□□ 0.58
CDX2Q99626 HDHD5-201ENST00000155674 1735 ntAPPRIS P3 TSL 1 (best) BASIC18.66■□□□□ 0.58
CDX2Q99626 SKIDA1-201ENST00000444772 2667 ntAPPRIS ALT2 TSL 5 BASIC18.66■□□□□ 0.58
CDX2Q99626 BSCL2-210ENST00000421906 1440 ntAPPRIS P3 TSL 5 BASIC18.66■□□□□ 0.58
CDX2Q99626 VWA8-AS1-201ENST00000611103 2079 ntTSL 2 BASIC18.65■□□□□ 0.58
CDX2Q99626 ENTPD8-201ENST00000344119 2111 ntTSL 1 (best) BASIC18.65■□□□□ 0.58
CDX2Q99626 ITGB7-209ENST00000550743 2138 ntTSL 5 BASIC18.65■□□□□ 0.58
CDX2Q99626 IMPDH1-214ENST00000496200 2283 ntTSL 2 BASIC18.65■□□□□ 0.58
CDX2Q99626 ITPRIPL1-205ENST00000536814 1947 ntAPPRIS P1 TSL 3 BASIC18.65■□□□□ 0.58
CDX2Q99626 CERCAM-213ENST00000612334 1554 ntAPPRIS ALT2 TSL 5 BASIC18.65■□□□□ 0.58
CDX2Q99626 GPSM1-206ENST00000616132 2270 ntTSL 1 (best) BASIC18.65■□□□□ 0.58
CDX2Q99626 CFC1B-202ENST00000619050 1554 ntTSL 5 BASIC18.65■□□□□ 0.58
CDX2Q99626 ERCC1-201ENST00000013807 1278 ntTSL 1 (best) BASIC18.65■□□□□ 0.58
CDX2Q99626 CRYBA2-201ENST00000295728 893 ntAPPRIS P1 TSL 1 (best) BASIC18.65■□□□□ 0.58
CDX2Q99626 AGTRAP-202ENST00000376627 1055 ntTSL 5 BASIC18.65■□□□□ 0.58
CDX2Q99626 C9orf24-204ENST00000379127 596 ntTSL 3 BASIC18.65■□□□□ 0.58
CDX2Q99626 KRT18P32-201ENST00000424695 1287 ntBASIC18.65■□□□□ 0.58
CDX2Q99626 FAM58DP-201ENST00000428076 619 ntBASIC18.65■□□□□ 0.58
CDX2Q99626 PRAP1-201ENST00000433452 971 ntAPPRIS P3 TSL 1 (best) BASIC18.65■□□□□ 0.58
CDX2Q99626 LINC00473-201ENST00000444465 798 ntTSL 3 BASIC18.65■□□□□ 0.58
CDX2Q99626 AC012645.3-201ENST00000568506 470 ntTSL 3 BASIC18.65■□□□□ 0.58
CDX2Q99626 SLC9A3-AS1-204ENST00000606288 791 ntTSL 2 BASIC18.65■□□□□ 0.58
CDX2Q99626 AC004832.1-201ENST00000610936 1005 ntTSL 5 BASIC18.65■□□□□ 0.58
CDX2Q99626 SDHAF3-202ENST00000432641 2060 ntAPPRIS P1 TSL 1 (best) BASIC18.65■□□□□ 0.58
CDX2Q99626 CGREF1-206ENST00000405600 1346 ntAPPRIS P2 TSL 4 BASIC18.65■□□□□ 0.58
CDX2Q99626 AC060780.1-201ENST00000635600 1782 ntTSL 5 BASIC18.65■□□□□ 0.58
CDX2Q99626 GNB1-210ENST00000615252 3048 ntTSL 5 BASIC18.65■□□□□ 0.58
CDX2Q99626 PLEKHG2-202ENST00000409797 2205 ntAPPRIS ALT2 TSL 2 BASIC18.65■□□□□ 0.58
CDX2Q99626 MRGPRG-AS1-201ENST00000420873 1818 ntTSL 2 BASIC18.65■□□□□ 0.58
CDX2Q99626 NFIX-203ENST00000397661 3143 ntTSL 5 BASIC18.65■□□□□ 0.58
CDX2Q99626 AL353593.2-201ENST00000602529 1483 ntBASIC18.65■□□□□ 0.58
CDX2Q99626 UQCC3-201ENST00000377953 1947 ntAPPRIS P1 TSL 1 (best) BASIC18.64■□□□□ 0.58
CDX2Q99626 ALDH3A2-225ENST00000630662 1558 ntTSL 5 BASIC18.64■□□□□ 0.58
CDX2Q99626 ST3GAL5-268ENST00000640982 2465 ntAPPRIS ALT2 TSL 5 BASIC18.64■□□□□ 0.58
CDX2Q99626 PTPRJ-208ENST00000615445 4773 ntAPPRIS ALT2 TSL 5 BASIC18.64■□□□□ 0.57
CDX2Q99626 C21orf59-201ENST00000290155 1692 ntAPPRIS P1 TSL 1 (best) BASIC18.64■□□□□ 0.57
CDX2Q99626 FAM53C-202ENST00000434981 1686 ntAPPRIS P1 TSL 1 (best) BASIC18.64■□□□□ 0.57
CDX2Q99626 ISPD-201ENST00000399310 1709 ntTSL 1 (best) BASIC18.64■□□□□ 0.57
CDX2Q99626 SERPINB5-201ENST00000382771 2783 ntAPPRIS P1 TSL 1 (best) BASIC18.64■□□□□ 0.57
Retrieved 100 of 98,524 protein–RNA pairs in 48.9 ms