Protein–RNA interactions for Protein: Q02388

COL7A1, Collagen alpha-1(VII) chain, humanhuman

Predictions only

Length 2,944 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL7A1Q02388 NOTCH2NL-201ENST00000362074 1874 ntAPPRIS P2 TSL 1 (best) BASIC12.79□□□□□ -0.36
COL7A1Q02388 ARHGAP22-210ENST00000477708 1951 ntTSL 1 (best) BASIC12.79□□□□□ -0.36
COL7A1Q02388 RPS12-201ENST00000230050 631 ntAPPRIS P1 TSL 1 (best) BASIC12.79□□□□□ -0.36
COL7A1Q02388 ITLN1-201ENST00000326245 1183 ntAPPRIS P1 TSL 1 (best) BASIC12.79□□□□□ -0.36
COL7A1Q02388 ATPIF1-201ENST00000335514 494 ntAPPRIS P1 TSL 1 (best) BASIC12.79□□□□□ -0.36
COL7A1Q02388 ZHX1-C8orf76-201ENST00000357082 1257 ntAPPRIS P2 TSL 2 BASIC12.79□□□□□ -0.36
COL7A1Q02388 YAE1D1-202ENST00000432096 968 ntTSL 2 BASIC12.79□□□□□ -0.36
COL7A1Q02388 AC136475.3-203ENST00000525217 617 ntTSL 2 BASIC12.79□□□□□ -0.36
COL7A1Q02388 HOXD8-204ENST00000544999 1235 ntAPPRIS ALT2 TSL 5 BASIC12.79□□□□□ -0.36
COL7A1Q02388 CCDC85C-204ENST00000555822 930 ntTSL 5 BASIC12.79□□□□□ -0.36
COL7A1Q02388 MIR22HG-204ENST00000571595 767 ntTSL 5 BASIC12.79□□□□□ -0.36
COL7A1Q02388 MIR4751-201ENST00000578027 74 ntBASIC12.79□□□□□ -0.36
COL7A1Q02388 AD001527.2-201ENST00000622994 785 ntBASIC12.79□□□□□ -0.36
COL7A1Q02388 AC105339.1-204ENST00000636249 355 ntBASIC12.79□□□□□ -0.36
COL7A1Q02388 HFE2-204ENST00000475797 1381 ntTSL 2 BASIC12.79□□□□□ -0.36
COL7A1Q02388 KRT3-201ENST00000417996 2319 ntAPPRIS P1 TSL 1 (best) BASIC12.79□□□□□ -0.36
COL7A1Q02388 FASTK-202ENST00000353841 1402 ntTSL 1 (best) BASIC12.79□□□□□ -0.36
COL7A1Q02388 HLA-A-203ENST00000376809 1611 ntAPPRIS P1 BASIC12.79□□□□□ -0.36
COL7A1Q02388 DMKN-213ENST00000447113 1611 ntAPPRIS ALT2 TSL 1 (best) BASIC12.79□□□□□ -0.36
COL7A1Q02388 NPM1-201ENST00000296930 1758 ntAPPRIS P1 TSL 1 (best) BASIC12.79□□□□□ -0.36
COL7A1Q02388 COA5-201ENST00000328709 1754 ntAPPRIS P1 TSL 1 (best) BASIC12.79□□□□□ -0.36
COL7A1Q02388 PLD3-205ENST00000409419 1966 ntAPPRIS P1 TSL 5 BASIC12.79□□□□□ -0.36
COL7A1Q02388 DNM2-205ENST00000585892 2774 ntTSL 1 (best) BASIC12.79□□□□□ -0.36
COL7A1Q02388 HSD17B10-203ENST00000375304 916 ntTSL 1 (best) BASIC12.78□□□□□ -0.36
COL7A1Q02388 THAP7-202ENST00000399133 1144 ntAPPRIS P1 TSL 2 BASIC12.78□□□□□ -0.36
COL7A1Q02388 AP000695.1-201ENST00000429588 893 ntTSL 3 BASIC12.78□□□□□ -0.36
COL7A1Q02388 AL022068.1-202ENST00000432171 794 ntTSL 3 BASIC12.78□□□□□ -0.36
COL7A1Q02388 TAF8-206ENST00000472818 719 ntTSL 2 BASIC12.78□□□□□ -0.36
COL7A1Q02388 NECAP2-208ENST00000504551 768 ntTSL 5 BASIC12.78□□□□□ -0.36
COL7A1Q02388 AC123777.1-201ENST00000534827 1247 ntTSL 3 BASIC12.78□□□□□ -0.36
COL7A1Q02388 AC025678.2-201ENST00000562061 970 ntBASIC12.78□□□□□ -0.36
COL7A1Q02388 AC025048.6-201ENST00000634326 1161 ntBASIC12.78□□□□□ -0.36
COL7A1Q02388 CLDN15-208ENST00000611078 1509 ntTSL 5 BASIC12.78□□□□□ -0.36
COL7A1Q02388 SLC38A11-202ENST00000409058 1647 ntAPPRIS ALT2 TSL 5 BASIC12.78□□□□□ -0.36
COL7A1Q02388 AC132938.5-201ENST00000624980 1813 ntBASIC12.78□□□□□ -0.36
COL7A1Q02388 UQCC3-201ENST00000377953 1947 ntAPPRIS P1 TSL 1 (best) BASIC12.78□□□□□ -0.36
COL7A1Q02388 AC005920.1-201ENST00000501718 2054 ntTSL 2 BASIC12.78□□□□□ -0.36
COL7A1Q02388 HIRA-201ENST00000263208 4053 ntAPPRIS P1 TSL 1 (best) BASIC12.78□□□□□ -0.36
COL7A1Q02388 FOXC2-201ENST00000320354 2478 ntAPPRIS P1 BASIC12.78□□□□□ -0.36
COL7A1Q02388 ATOH8-201ENST00000306279 2438 ntAPPRIS P1 TSL 1 (best) BASIC12.78□□□□□ -0.36
COL7A1Q02388 KCNN2-207ENST00000610748 2091 ntTSL 3 BASIC12.78□□□□□ -0.36
COL7A1Q02388 SMARCD3-202ENST00000356800 1669 ntTSL 1 (best) BASIC12.78□□□□□ -0.36
COL7A1Q02388 CEACAM16-202ENST00000587331 1692 ntAPPRIS P1 TSL 1 (best) BASIC12.78□□□□□ -0.36
COL7A1Q02388 DXO-203ENST00000375356 1533 ntAPPRIS P1 TSL 1 (best) BASIC12.78□□□□□ -0.36
COL7A1Q02388 HAUS8-202ENST00000448593 1545 ntAPPRIS ALT2 TSL 5 BASIC12.78□□□□□ -0.36
COL7A1Q02388 LUC7L-221ENST00000629543 1520 ntTSL 5 BASIC12.78□□□□□ -0.36
COL7A1Q02388 OSTC-201ENST00000361564 1077 ntAPPRIS P1 TSL 1 (best) BASIC12.78□□□□□ -0.36
COL7A1Q02388 AC236430.1-201ENST00000402231 743 ntBASIC12.78□□□□□ -0.36
COL7A1Q02388 AL391845.1-202ENST00000449154 437 ntTSL 3 BASIC12.78□□□□□ -0.36
COL7A1Q02388 AC082651.1-201ENST00000478468 832 ntTSL 1 (best) BASIC12.78□□□□□ -0.36
COL7A1Q02388 UBE2Q2L-201ENST00000558195 498 ntAPPRIS P1 TSL 2 BASIC12.78□□□□□ -0.36
COL7A1Q02388 AC127496.4-201ENST00000571591 549 ntTSL 4 BASIC12.78□□□□□ -0.36
COL7A1Q02388 TBX18-206ENST00000606784 1230 ntTSL 1 (best) BASIC12.78□□□□□ -0.36
COL7A1Q02388 COLCA2-204ENST00000610738 975 ntAPPRIS P2 TSL 1 (best) BASIC12.78□□□□□ -0.36
COL7A1Q02388 PGM5P2-202ENST00000637225 1043 ntBASIC12.78□□□□□ -0.36
COL7A1Q02388 AC104581.1-201ENST00000324348 2852 ntAPPRIS P1 TSL 2 BASIC12.78□□□□□ -0.36
COL7A1Q02388 UBR2-203ENST00000372903 2423 ntTSL 1 (best) BASIC12.78□□□□□ -0.36
COL7A1Q02388 KANK4-202ENST00000354381 2103 ntTSL 2 BASIC12.78□□□□□ -0.36
COL7A1Q02388 FGF14-IT1-202ENST00000607251 2123 ntTSL 2 BASIC12.78□□□□□ -0.36
COL7A1Q02388 NFIL3-201ENST00000297689 2085 ntAPPRIS P1 TSL 1 (best) BASIC12.78□□□□□ -0.36
COL7A1Q02388 SEPT9-246ENST00000592951 1793 ntAPPRIS ALT2 TSL 2 BASIC12.78□□□□□ -0.36
COL7A1Q02388 DHRS2-201ENST00000250383 1705 ntAPPRIS P3 TSL 1 (best) BASIC12.78□□□□□ -0.36
COL7A1Q02388 ENTPD8-204ENST00000472938 1749 ntAPPRIS P1 TSL 1 (best) BASIC12.78□□□□□ -0.36
COL7A1Q02388 MEF2B-201ENST00000409224 1683 ntTSL 2 BASIC12.78□□□□□ -0.36
COL7A1Q02388 EGR3-204ENST00000522910 1553 ntAPPRIS ALT1 TSL 2 BASIC12.78□□□□□ -0.36
COL7A1Q02388 EFEMP2-210ENST00000528176 1504 ntTSL 5 BASIC12.78□□□□□ -0.36
COL7A1Q02388 AC009102.3-201ENST00000623118 1491 ntBASIC12.78□□□□□ -0.36
COL7A1Q02388 KRT8P47-201ENST00000604727 1398 ntBASIC12.78□□□□□ -0.36
COL7A1Q02388 PPIB-201ENST00000300026 1081 ntAPPRIS P1 TSL 1 (best) BASIC12.78□□□□□ -0.36
COL7A1Q02388 ZNF524-201ENST00000301073 1102 ntAPPRIS P1 TSL 1 (best) BASIC12.78□□□□□ -0.36
COL7A1Q02388 EIF5A-201ENST00000336452 1256 ntTSL 1 (best) BASIC12.78□□□□□ -0.36
COL7A1Q02388 SIVA1-202ENST00000347067 550 ntTSL 1 (best) BASIC12.78□□□□□ -0.36
COL7A1Q02388 ITM2B-201ENST00000378549 805 ntTSL 5 BASIC12.78□□□□□ -0.36
COL7A1Q02388 AL109613.1-202ENST00000427243 639 ntTSL 1 (best) BASIC12.78□□□□□ -0.36
COL7A1Q02388 FAM58DP-201ENST00000428076 619 ntBASIC12.78□□□□□ -0.36
COL7A1Q02388 AC055876.3-201ENST00000431496 288 ntBASIC12.78□□□□□ -0.36
COL7A1Q02388 FAM66A-202ENST00000602658 546 ntTSL 5 BASIC12.78□□□□□ -0.36
COL7A1Q02388 AC138649.4-201ENST00000612222 287 ntBASIC12.78□□□□□ -0.36
COL7A1Q02388 LCE1E-203ENST00000619588 267 ntAPPRIS ALT2 TSL 5 BASIC12.78□□□□□ -0.36
COL7A1Q02388 SIGLEC14-201ENST00000360844 2035 ntAPPRIS P1 TSL 1 (best) BASIC12.78□□□□□ -0.36
COL7A1Q02388 BSN-AS2-201ENST00000421598 2603 ntTSL 2 BASIC12.78□□□□□ -0.36
COL7A1Q02388 DDX19B-207ENST00000563206 1765 ntTSL 5 BASIC12.77□□□□□ -0.36
COL7A1Q02388 CASTOR1-202ENST00000407689 1623 ntAPPRIS P1 TSL 1 (best) BASIC12.77□□□□□ -0.36
COL7A1Q02388 GULP1-209ENST00000410051 1595 ntTSL 1 (best) BASIC12.77□□□□□ -0.36
COL7A1Q02388 NKX3-2-201ENST00000382438 2801 ntAPPRIS P1 TSL 1 (best) BASIC12.77□□□□□ -0.36
COL7A1Q02388 DPM2-201ENST00000314392 1542 ntAPPRIS P1 TSL 1 (best) BASIC12.77□□□□□ -0.36
COL7A1Q02388 GPR146-201ENST00000397095 1969 ntAPPRIS P1 TSL 1 (best) BASIC12.77□□□□□ -0.36
COL7A1Q02388 PDGFA-201ENST00000354513 1308 ntTSL 1 (best) BASIC12.77□□□□□ -0.36
COL7A1Q02388 AP002414.1-201ENST00000391405 1147 ntBASIC12.77□□□□□ -0.36
COL7A1Q02388 TSTD1-204ENST00000423014 593 ntAPPRIS ALT2 TSL 2 BASIC12.77□□□□□ -0.36
COL7A1Q02388 SRP19-202ENST00000445150 833 ntTSL 2 BASIC12.77□□□□□ -0.36
COL7A1Q02388 DUX4L27-201ENST00000554796 1261 ntBASIC12.77□□□□□ -0.36
COL7A1Q02388 AC015712.4-202ENST00000558641 1007 ntTSL 4 BASIC12.77□□□□□ -0.36
COL7A1Q02388 SNHG15-207ENST00000582727 1039 ntTSL 2 BASIC12.77□□□□□ -0.36
COL7A1Q02388 H3F3B-208ENST00000589599 576 ntAPPRIS P1 TSL 3 BASIC12.77□□□□□ -0.36
COL7A1Q02388 AC008687.5-201ENST00000593746 558 ntBASIC12.77□□□□□ -0.36
COL7A1Q02388 AQP6-205ENST00000618286 829 ntTSL 5 BASIC12.77□□□□□ -0.36
COL7A1Q02388 TPGS2-219ENST00000593035 1727 ntAPPRIS ALT2 TSL 2 BASIC12.77□□□□□ -0.36
COL7A1Q02388 AC005906.2-203ENST00000640962 2091 ntTSL 5 BASIC12.77□□□□□ -0.37
COL7A1Q02388 COLEC11-206ENST00000403096 1557 ntTSL 1 (best) BASIC12.77□□□□□ -0.37
Retrieved 100 of 98,524 protein–RNA pairs in 22.5 ms