Protein–RNA interactions for Protein: P13611

VCAN, Versican core protein, humanhuman

Predictions only

Length 3,396 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VCANP13611 LY6G6C-201ENST00000375819 992 ntAPPRIS P1 TSL 1 (best) BASIC18.5■□□□□ 0.55
VCANP13611 SELENOM-202ENST00000402395 1054 ntAPPRIS P2 TSL 1 (best) BASIC18.5■□□□□ 0.55
VCANP13611 TUBA4B-203ENST00000490341 1380 ntAPPRIS P1 TSL 2 BASIC18.5■□□□□ 0.55
VCANP13611 LARP4-210ENST00000522085 1577 ntTSL 2 BASIC18.5■□□□□ 0.55
VCANP13611 TDG-209ENST00000544861 1387 ntTSL 2 BASIC18.5■□□□□ 0.55
VCANP13611 AC004832.1-201ENST00000610936 1005 ntTSL 5 BASIC18.5■□□□□ 0.55
VCANP13611 GPR182-203ENST00000622922 591 ntBASIC18.5■□□□□ 0.55
VCANP13611 LINC00466-207ENST00000634725 1736 ntTSL 5 BASIC18.5■□□□□ 0.55
VCANP13611 NSMF-201ENST00000265663 2981 ntAPPRIS P3 TSL 1 (best) BASIC18.49■□□□□ 0.55
VCANP13611 SH3BP1-201ENST00000357436 2852 ntAPPRIS P1 TSL 1 (best) BASIC18.49■□□□□ 0.55
VCANP13611 AP000695.1-201ENST00000429588 893 ntTSL 3 BASIC18.49■□□□□ 0.55
VCANP13611 POLD4-207ENST00000531239 584 ntTSL 2 BASIC18.49■□□□□ 0.55
VCANP13611 AC046168.2-201ENST00000560590 875 ntTSL 3 BASIC18.49■□□□□ 0.55
VCANP13611 AC126696.2-201ENST00000563687 522 ntTSL 3 BASIC18.49■□□□□ 0.55
VCANP13611 ZEB1-AS1-209ENST00000607455 559 ntTSL 4 BASIC18.49■□□□□ 0.55
VCANP13611 PLXNB2-214ENST00000614805 1387 ntTSL 5 BASIC18.49■□□□□ 0.55
VCANP13611 MCHR2-202ENST00000369212 1311 ntAPPRIS P1 TSL 1 (best) BASIC18.49■□□□□ 0.55
VCANP13611 RPL30-202ENST00000396070 440 ntTSL 2 BASIC18.49■□□□□ 0.55
VCANP13611 PGF-202ENST00000405431 666 ntTSL 5 BASIC18.49■□□□□ 0.55
VCANP13611 CRYGEP-201ENST00000412192 528 ntBASIC18.49■□□□□ 0.55
VCANP13611 AC021054.1-202ENST00000543884 599 ntTSL 3 BASIC18.49■□□□□ 0.55
VCANP13611 ZNF667-AS1-204ENST00000588158 921 ntTSL 3 BASIC18.49■□□□□ 0.55
VCANP13611 AC010336.6-201ENST00000595107 528 ntTSL 4 BASIC18.49■□□□□ 0.55
VCANP13611 AC017083.2-201ENST00000608069 979 ntBASIC18.49■□□□□ 0.55
VCANP13611 AL022326.1-202ENST00000641533 845 ntBASIC18.49■□□□□ 0.55
VCANP13611 KCTD18-201ENST00000359878 2940 ntAPPRIS P1 TSL 1 (best) BASIC18.49■□□□□ 0.55
VCANP13611 FAM3A-208ENST00000419205 1763 ntTSL 2 BASIC18.49■□□□□ 0.55
VCANP13611 SPTLC1P1-201ENST00000447199 261 ntBASIC18.48■□□□□ 0.55
VCANP13611 NECAP2-208ENST00000504551 768 ntTSL 5 BASIC18.48■□□□□ 0.55
VCANP13611 AL512356.2-201ENST00000546955 174 ntBASIC18.48■□□□□ 0.55
VCANP13611 IGHV3-72-202ENST00000621503 303 ntBASIC18.48■□□□□ 0.55
VCANP13611 FAM76B-204ENST00000536839 2546 ntAPPRIS ALT1 TSL 5 BASIC18.48■□□□□ 0.55
VCANP13611 ACADS-201ENST00000242592 1950 ntAPPRIS P1 TSL 1 (best) BASIC18.48■□□□□ 0.55
VCANP13611 LAMP1-201ENST00000332556 2699 ntAPPRIS P1 TSL 1 (best) BASIC18.48■□□□□ 0.55
VCANP13611 MEN1-206ENST00000377321 2614 ntTSL 1 (best) BASIC18.48■□□□□ 0.55
VCANP13611 P2RY6-201ENST00000349767 1700 ntAPPRIS P1 TSL 2 BASIC18.48■□□□□ 0.55
VCANP13611 TPGS2-219ENST00000593035 1727 ntAPPRIS ALT2 TSL 2 BASIC18.48■□□□□ 0.55
VCANP13611 PNKD-201ENST00000248451 758 ntTSL 1 (best) BASIC18.48■□□□□ 0.55
VCANP13611 ACA64.2-201ENST00000459014 129 ntBASIC18.48■□□□□ 0.55
VCANP13611 TUBB3-203ENST00000553967 736 ntTSL 2 BASIC18.48■□□□□ 0.55
VCANP13611 OCEL1-213ENST00000601529 942 ntTSL 3 BASIC18.48■□□□□ 0.55
VCANP13611 PGM5P2-202ENST00000637225 1043 ntBASIC18.48■□□□□ 0.55
VCANP13611 KRT3-201ENST00000417996 2319 ntAPPRIS P1 TSL 1 (best) BASIC18.48■□□□□ 0.55
VCANP13611 MID2-201ENST00000262843 2876 ntTSL 1 (best) BASIC18.48■□□□□ 0.55
VCANP13611 TJP1-208ENST00000495972 2890 ntTSL 1 (best) BASIC18.48■□□□□ 0.55
VCANP13611 DHRS3-204ENST00000616661 1722 ntAPPRIS P1 TSL 1 (best) BASIC18.48■□□□□ 0.55
VCANP13611 AZIN2-203ENST00000373441 1443 ntTSL 1 (best) BASIC18.48■□□□□ 0.55
VCANP13611 LSR-214ENST00000621372 2274 ntAPPRIS P4 TSL 1 (best) BASIC18.48■□□□□ 0.55
VCANP13611 FBLN7-205ENST00000409903 1989 ntTSL 5 BASIC18.48■□□□□ 0.55
VCANP13611 CCDC102A-201ENST00000258214 2463 ntAPPRIS P1 TSL 1 (best) BASIC18.48■□□□□ 0.55
VCANP13611 KLF6-204ENST00000469435 2169 ntTSL 1 (best) BASIC18.48■□□□□ 0.55
VCANP13611 BCYRN1-201ENST00000418539 200 ntBASIC18.48■□□□□ 0.55
VCANP13611 AC107890.1-201ENST00000422478 521 ntBASIC18.48■□□□□ 0.55
VCANP13611 AP000777.2-201ENST00000539897 501 ntTSL 4 BASIC18.48■□□□□ 0.55
VCANP13611 AC007216.4-201ENST00000574364 562 ntTSL 4 BASIC18.48■□□□□ 0.55
VCANP13611 SECTM1-202ENST00000580437 1030 ntAPPRIS ALT2 TSL 2 BASIC18.48■□□□□ 0.55
VCANP13611 AC004706.3-202ENST00000621574 984 ntBASIC18.48■□□□□ 0.55
VCANP13611 CU104787.1-201ENST00000624155 288 ntTSL 1 (best) BASIC18.48■□□□□ 0.55
VCANP13611 ADM-208ENST00000534464 1640 ntTSL 2 BASIC18.48■□□□□ 0.55
VCANP13611 MAP7D2-203ENST00000443379 2476 ntAPPRIS ALT2 TSL 2 BASIC18.47■□□□□ 0.55
VCANP13611 AC110285.2-201ENST00000571724 1565 ntTSL 2 BASIC18.47■□□□□ 0.55
VCANP13611 METTL21C-201ENST00000267273 1088 ntAPPRIS P1 TSL 1 (best) BASIC18.47■□□□□ 0.55
VCANP13611 NME2-206ENST00000513177 692 ntAPPRIS P1 TSL 2 BASIC18.47■□□□□ 0.55
VCANP13611 NHLRC1-201ENST00000340650 2248 ntAPPRIS P1 BASIC18.47■□□□□ 0.55
VCANP13611 FUT5-202ENST00000588525 1988 ntAPPRIS P1 TSL 1 (best) BASIC18.47■□□□□ 0.55
VCANP13611 SMPDL3A-203ENST00000539041 1755 ntTSL 2 BASIC18.47■□□□□ 0.55
VCANP13611 SHOX-204ENST00000554971 1902 ntAPPRIS P1 TSL 1 (best) BASIC18.47■□□□□ 0.55
VCANP13611 C3orf18-203ENST00000426034 2486 ntAPPRIS P1 TSL 1 (best) BASIC18.47■□□□□ 0.55
VCANP13611 NOTCH2NL-201ENST00000362074 1874 ntAPPRIS P2 TSL 1 (best) BASIC18.47■□□□□ 0.55
VCANP13611 IRAK3-202ENST00000457197 1853 ntTSL 2 BASIC18.47■□□□□ 0.55
VCANP13611 LPAR2-203ENST00000586703 1823 ntAPPRIS P1 TSL 1 (best) BASIC18.47■□□□□ 0.55
VCANP13611 SNHG11-204ENST00000420006 720 ntTSL 3 BASIC18.47■□□□□ 0.55
VCANP13611 SNHG11-206ENST00000432153 1181 ntTSL 3 BASIC18.47■□□□□ 0.55
VCANP13611 FAM58CP-201ENST00000435741 640 ntBASIC18.47■□□□□ 0.55
VCANP13611 AC016727.1-204ENST00000578974 420 ntTSL 3 BASIC18.47■□□□□ 0.55
VCANP13611 AC002398.2-201ENST00000587767 660 ntTSL 5 BASIC18.47■□□□□ 0.55
VCANP13611 H3F3B-208ENST00000589599 576 ntAPPRIS P1 TSL 3 BASIC18.47■□□□□ 0.55
VCANP13611 GMFG-207ENST00000598034 1028 ntAPPRIS ALT1 TSL 1 (best) BASIC18.47■□□□□ 0.55
VCANP13611 AC244153.1-203ENST00000622796 419 ntTSL 2 BASIC18.47■□□□□ 0.55
VCANP13611 PAIP1-201ENST00000306846 2782 ntTSL 1 (best) BASIC18.47■□□□□ 0.55
VCANP13611 IQCE-204ENST00000404984 2086 ntAPPRIS ALT2 TSL 5 BASIC18.47■□□□□ 0.55
VCANP13611 RBM34-201ENST00000408888 2054 ntAPPRIS P1 TSL 1 (best) BASIC18.47■□□□□ 0.55
VCANP13611 GDF5OS-201ENST00000374375 1734 ntAPPRIS P1 TSL 2 BASIC18.47■□□□□ 0.55
VCANP13611 NAPRT-203ENST00000435154 1877 ntTSL 2 BASIC18.47■□□□□ 0.55
VCANP13611 KRT81-202ENST00000615839 1505 ntAPPRIS ALT2 TSL 5 BASIC18.47■□□□□ 0.55
VCANP13611 SAMD11-213ENST00000618181 2179 ntAPPRIS ALT2 TSL 5 BASIC18.47■□□□□ 0.55
VCANP13611 CALY-202ENST00000368555 783 ntTSL 2 BASIC18.47■□□□□ 0.55
VCANP13611 AC093151.3-201ENST00000425554 623 ntTSL 2 BASIC18.47■□□□□ 0.55
VCANP13611 AC021744.1-201ENST00000518354 453 ntTSL 3 BASIC18.47■□□□□ 0.55
VCANP13611 EBLN3P-205ENST00000629870 958 ntTSL 3 BASIC18.47■□□□□ 0.55
VCANP13611 LINC01123-202ENST00000419296 2436 ntTSL 2 BASIC18.46■□□□□ 0.55
VCANP13611 DIO3OS-212ENST00000557661 1937 ntTSL 1 (best) BASIC18.46■□□□□ 0.55
VCANP13611 FAH-201ENST00000261755 1471 ntAPPRIS P1 TSL 5 BASIC18.46■□□□□ 0.55
VCANP13611 KLC1-208ENST00000452929 2453 ntTSL 5 BASIC18.46■□□□□ 0.55
VCANP13611 ADM2-201ENST00000395737 535 ntAPPRIS P1 TSL 1 (best) BASIC18.46■□□□□ 0.55
VCANP13611 AC093904.2-201ENST00000495580 418 ntTSL 3 BASIC18.46■□□□□ 0.55
VCANP13611 RPL28-209ENST00000560055 670 ntTSL 3 BASIC18.46■□□□□ 0.55
VCANP13611 DUSP13-212ENST00000605915 1015 ntTSL 5 BASIC18.46■□□□□ 0.55
VCANP13611 DNAJC28-204ENST00000617313 2237 ntAPPRIS P1 TSL 5 BASIC18.46■□□□□ 0.55
VCANP13611 TEKT2-201ENST00000207457 1509 ntAPPRIS P1 TSL 1 (best) BASIC18.46■□□□□ 0.55
Retrieved 100 of 98,524 protein–RNA pairs in 31.6 ms