Protein–RNA interactions for Protein: O75161

NPHP4, Nephrocystin-4, humanhuman

Predicted RBP Predictions only

Length 1,426 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
NPHP4O75161 SMARCD3-202ENST00000356800 1669 ntTSL 1 (best) BASIC25.15■■□□□ 1.62
NPHP4O75161 KCNC2-204ENST00000540018 2168 ntAPPRIS ALT2 TSL 2 BASIC25.14■■□□□ 1.62
NPHP4O75161 CHGA-202ENST00000334654 1474 ntTSL 1 (best) BASIC25.14■■□□□ 1.62
NPHP4O75161 SENP5-204ENST00000445299 2491 ntTSL 2 BASIC25.14■■□□□ 1.62
NPHP4O75161 DPM2-201ENST00000314392 1542 ntAPPRIS P1 TSL 1 (best) BASIC25.14■■□□□ 1.62
NPHP4O75161 LINC00266-1-201ENST00000279067 928 ntTSL 1 (best) BASIC25.14■■□□□ 1.62
NPHP4O75161 AL732437.1-201ENST00000442008 595 ntTSL 4 BASIC25.14■■□□□ 1.62
NPHP4O75161 IL18BP-211ENST00000531053 853 ntAPPRIS ALT2 TSL 2 BASIC25.14■■□□□ 1.62
NPHP4O75161 AL138781.1-202ENST00000563018 775 ntTSL 3 BASIC25.14■■□□□ 1.62
NPHP4O75161 AC051619.7-201ENST00000568314 623 ntBASIC25.14■■□□□ 1.62
NPHP4O75161 IGHV3OR16-6-201ENST00000568775 360 ntBASIC25.14■■□□□ 1.62
NPHP4O75161 AC010336.3-201ENST00000597156 667 ntTSL 2 BASIC25.14■■□□□ 1.62
NPHP4O75161 Z94160.2-201ENST00000609322 910 ntTSL 1 (best) BASIC25.14■■□□□ 1.62
NPHP4O75161 MED16-214ENST00000617672 554 ntTSL 5 BASIC25.14■■□□□ 1.62
NPHP4O75161 RASSF1-202ENST00000357043 1864 ntAPPRIS P3 TSL 1 (best) BASIC25.14■■□□□ 1.62
NPHP4O75161 DDX19B-207ENST00000563206 1765 ntTSL 5 BASIC25.14■■□□□ 1.61
NPHP4O75161 GNRHR2-201ENST00000312753 1599 ntTSL 1 (best) BASIC25.13■■□□□ 1.61
NPHP4O75161 BCS1L-202ENST00000392109 1583 ntAPPRIS P1 TSL 1 (best) BASIC25.13■■□□□ 1.61
NPHP4O75161 BCS1L-204ENST00000392111 1584 ntAPPRIS P1 TSL 1 (best) BASIC25.13■■□□□ 1.61
NPHP4O75161 SLC7A9-202ENST00000587772 1568 ntAPPRIS P1 TSL 1 (best) BASIC25.13■■□□□ 1.61
NPHP4O75161 ANKRD13D-201ENST00000308440 2219 ntTSL 2 BASIC25.13■■□□□ 1.61
NPHP4O75161 BLCAP-202ENST00000397131 633 ntAPPRIS P1 TSL 3 BASIC25.13■■□□□ 1.61
NPHP4O75161 BLCAP-203ENST00000397134 566 ntAPPRIS P1 TSL 4 BASIC25.13■■□□□ 1.61
NPHP4O75161 PTCHD3P3-201ENST00000403073 906 ntBASIC25.13■■□□□ 1.61
NPHP4O75161 HLA-V-201ENST00000429037 534 ntBASIC25.13■■□□□ 1.61
NPHP4O75161 ARPC4-203ENST00000433034 926 ntTSL 3 BASIC25.13■■□□□ 1.61
NPHP4O75161 IDH3B-206ENST00000474315 1279 ntAPPRIS ALT1 TSL 1 (best) BASIC25.13■■□□□ 1.61
NPHP4O75161 LINC00595-207ENST00000476909 792 ntTSL 2 BASIC25.13■■□□□ 1.61
NPHP4O75161 IGLL5-201ENST00000526893 1050 ntAPPRIS P2 TSL 1 (best) BASIC25.13■■□□□ 1.61
NPHP4O75161 IGLL5-202ENST00000531372 882 ntTSL 1 (best) BASIC25.13■■□□□ 1.61
NPHP4O75161 OR10S1-201ENST00000531945 1121 ntAPPRIS P2 BASIC25.13■■□□□ 1.61
NPHP4O75161 TVP23B-206ENST00000574226 1080 ntAPPRIS ALT1 TSL 1 (best) BASIC25.13■■□□□ 1.61
NPHP4O75161 AC092115.3-201ENST00000575838 592 ntTSL 5 BASIC25.13■■□□□ 1.61
NPHP4O75161 TMEM220-AS1-206ENST00000583343 876 ntTSL 3 BASIC25.13■■□□□ 1.61
NPHP4O75161 AC010776.2-201ENST00000588946 1081 ntTSL 2 BASIC25.13■■□□□ 1.61
NPHP4O75161 AL590235.2-202ENST00000602543 594 ntTSL 5 BASIC25.13■■□□□ 1.61
NPHP4O75161 OR10S1-202ENST00000641123 1121 ntAPPRIS ALT2 BASIC25.13■■□□□ 1.61
NPHP4O75161 PAAF1-205ENST00000535604 1695 ntTSL 5 BASIC25.13■■□□□ 1.61
NPHP4O75161 ISPD-201ENST00000399310 1709 ntTSL 1 (best) BASIC25.13■■□□□ 1.61
NPHP4O75161 NMRK1-203ENST00000376811 2050 ntTSL 2 BASIC25.13■■□□□ 1.61
NPHP4O75161 ASB16-201ENST00000293414 2139 ntAPPRIS P1 TSL 1 (best) BASIC25.13■■□□□ 1.61
NPHP4O75161 FAM3A-215ENST00000447601 1800 ntAPPRIS P1 TSL 1 (best) BASIC25.13■■□□□ 1.61
NPHP4O75161 AC006116.8-202ENST00000587620 1550 ntBASIC25.13■■□□□ 1.61
NPHP4O75161 NKIRAS1-202ENST00000412028 1605 ntAPPRIS ALT1 TSL 5 BASIC25.13■■□□□ 1.61
NPHP4O75161 AC092919.2-201ENST00000623631 1645 ntBASIC25.13■■□□□ 1.61
NPHP4O75161 EIF5A-201ENST00000336452 1256 ntTSL 1 (best) BASIC25.12■■□□□ 1.61
NPHP4O75161 SZT2-202ENST00000372450 1191 ntAPPRIS ALT2 TSL 1 (best) BASIC25.12■■□□□ 1.61
NPHP4O75161 HUS1B-201ENST00000380907 1025 ntAPPRIS P1 BASIC25.12■■□□□ 1.61
NPHP4O75161 FAM159B-201ENST00000389074 847 ntAPPRIS P1 TSL 2 BASIC25.12■■□□□ 1.61
NPHP4O75161 DDX43P3-201ENST00000441064 443 ntBASIC25.12■■□□□ 1.61
NPHP4O75161 UGT1A2P-201ENST00000454886 866 ntBASIC25.12■■□□□ 1.61
NPHP4O75161 VPS29-207ENST00000549970 818 ntTSL 3 BASIC25.12■■□□□ 1.61
NPHP4O75161 EEF1AKMT3-204ENST00000551420 836 ntTSL 2 BASIC25.12■■□□□ 1.61
NPHP4O75161 OVCA2-201ENST00000572195 1122 ntAPPRIS P1 TSL 1 (best) BASIC25.12■■□□□ 1.61
NPHP4O75161 GGTLC5P-201ENST00000617623 998 ntBASIC25.12■■□□□ 1.61
NPHP4O75161 SLC34A3-202ENST00000538474 2162 ntAPPRIS P1 TSL 5 BASIC25.12■■□□□ 1.61
NPHP4O75161 GSDMD-201ENST00000262580 1762 ntAPPRIS P2 TSL 1 (best) BASIC25.12■■□□□ 1.61
NPHP4O75161 SIRPAP1-201ENST00000448467 1770 ntBASIC25.12■■□□□ 1.61
NPHP4O75161 ANXA4-202ENST00000409920 1414 ntTSL 1 (best) BASIC25.12■■□□□ 1.61
NPHP4O75161 CYBA-210ENST00000569359 1415 ntTSL 1 (best) BASIC25.12■■□□□ 1.61
NPHP4O75161 PSMC5-202ENST00000375812 1494 ntTSL 2 BASIC25.12■■□□□ 1.61
NPHP4O75161 PKD1L2-209ENST00000531391 1488 ntTSL 1 (best) BASIC25.12■■□□□ 1.61
NPHP4O75161 ACP5-201ENST00000218758 1630 ntAPPRIS P1 TSL 1 (best) BASIC25.12■■□□□ 1.61
NPHP4O75161 BAG1-202ENST00000379704 1128 ntAPPRIS ALT2 TSL 1 (best) BASIC25.12■■□□□ 1.61
NPHP4O75161 HNRNPFP1-201ENST00000391730 1133 ntBASIC25.12■■□□□ 1.61
NPHP4O75161 HRAS-204ENST00000417302 1233 ntTSL 5 BASIC25.12■■□□□ 1.61
NPHP4O75161 NAGK-205ENST00000443938 1221 ntAPPRIS ALT1 TSL 5 BASIC25.12■■□□□ 1.61
NPHP4O75161 LINC01143-201ENST00000449073 625 ntTSL 2 BASIC25.12■■□□□ 1.61
NPHP4O75161 HRAS-205ENST00000451590 1151 ntAPPRIS P1 TSL 2 BASIC25.12■■□□□ 1.61
NPHP4O75161 AKR1E2-212ENST00000532248 844 ntTSL 1 (best) BASIC25.12■■□□□ 1.61
NPHP4O75161 ZNF710-AS1-201ENST00000558334 1168 ntTSL 1 (best) BASIC25.12■■□□□ 1.61
NPHP4O75161 CU104787.1-201ENST00000624155 288 ntTSL 1 (best) BASIC25.12■■□□□ 1.61
NPHP4O75161 AL732314.4-201ENST00000627627 515 ntTSL 4 BASIC25.12■■□□□ 1.61
NPHP4O75161 PLD3-205ENST00000409419 1966 ntAPPRIS P1 TSL 5 BASIC25.11■■□□□ 1.61
NPHP4O75161 PLXNB2-214ENST00000614805 1387 ntTSL 5 BASIC25.11■■□□□ 1.61
NPHP4O75161 WDR45-240ENST00000635003 1376 ntTSL 3 BASIC25.11■■□□□ 1.61
NPHP4O75161 CLEC10A-204ENST00000571664 1442 ntAPPRIS ALT2 TSL 1 (best) BASIC25.11■■□□□ 1.61
NPHP4O75161 MALT1-201ENST00000345724 2866 ntAPPRIS ALT2 TSL 1 (best) BASIC25.11■■□□□ 1.61
NPHP4O75161 MYCN-201ENST00000281043 2602 ntAPPRIS P1 TSL 5 BASIC25.11■■□□□ 1.61
NPHP4O75161 TCP11L2-203ENST00000547153 1788 ntTSL 2 BASIC25.11■■□□□ 1.61
NPHP4O75161 LRRC75A-201ENST00000409083 2656 ntAPPRIS P3 TSL 2 BASIC25.11■■□□□ 1.61
NPHP4O75161 KCNN2-207ENST00000610748 2091 ntTSL 3 BASIC25.11■■□□□ 1.61
NPHP4O75161 HCK-207ENST00000520553 2101 ntAPPRIS ALT2 TSL 1 (best) BASIC25.11■■□□□ 1.61
NPHP4O75161 RELB-207ENST00000625761 2279 ntAPPRIS ALT2 TSL 5 BASIC25.11■■□□□ 1.61
NPHP4O75161 DHRS7-201ENST00000216500 2322 ntAPPRIS P1 TSL 5 BASIC25.11■■□□□ 1.61
NPHP4O75161 AC003669.1-201ENST00000334569 611 ntBASIC25.11■■□□□ 1.61
NPHP4O75161 EDF1-203ENST00000371649 790 ntTSL 2 BASIC25.11■■□□□ 1.61
NPHP4O75161 COX5BP2-201ENST00000392354 334 ntBASIC25.11■■□□□ 1.61
NPHP4O75161 TFAMP1-201ENST00000412727 736 ntBASIC25.11■■□□□ 1.61
NPHP4O75161 LINC00351-201ENST00000424926 911 ntTSL 3 BASIC25.11■■□□□ 1.61
NPHP4O75161 AC055876.3-201ENST00000431496 288 ntBASIC25.11■■□□□ 1.61
NPHP4O75161 CNN2P2-201ENST00000443536 909 ntBASIC25.11■■□□□ 1.61
NPHP4O75161 CNN2P3-201ENST00000450201 906 ntBASIC25.11■■□□□ 1.61
NPHP4O75161 AC217774.2-201ENST00000580347 560 ntTSL 4 BASIC25.11■■□□□ 1.61
NPHP4O75161 TUBB4A-209ENST00000598006 565 ntTSL 2 BASIC25.11■■□□□ 1.61
NPHP4O75161 CECR7-204ENST00000609932 568 ntTSL 2 BASIC25.11■■□□□ 1.61
NPHP4O75161 AC138649.4-201ENST00000612222 287 ntBASIC25.11■■□□□ 1.61
NPHP4O75161 AL136317.3-201ENST00000618497 906 ntBASIC25.11■■□□□ 1.61
NPHP4O75161 AC244153.1-203ENST00000622796 419 ntTSL 2 BASIC25.11■■□□□ 1.61
NPHP4O75161 USP48-205ENST00000421625 2818 ntTSL 2 BASIC25.11■■□□□ 1.61
Retrieved 100 of 98,524 protein–RNA pairs in 29.5 ms