Protein–RNA interactions for Protein: Q9UMD9

COL17A1, Collagen alpha-1(XVII) chain, humanhuman

Predicted RBP Predictions only

Length 1,497 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL17A1Q9UMD9 KCNN2-207ENST00000610748 2091 ntTSL 3 BASIC27.14■■□□□ 1.93
COL17A1Q9UMD9 PML-205ENST00000395132 1738 ntTSL 1 (best) BASIC27.13■■□□□ 1.93
COL17A1Q9UMD9 ACHE-204ENST00000412389 2218 ntAPPRIS P1 TSL 1 (best) BASIC27.13■■□□□ 1.93
COL17A1Q9UMD9 CD8B-201ENST00000331469 832 ntTSL 1 (best) BASIC27.13■■□□□ 1.93
COL17A1Q9UMD9 EIF5A-201ENST00000336452 1256 ntTSL 1 (best) BASIC27.13■■□□□ 1.93
COL17A1Q9UMD9 LYPLA2-204ENST00000374505 907 ntTSL 3 BASIC27.13■■□□□ 1.93
COL17A1Q9UMD9 CENPM-203ENST00000402338 1002 ntTSL 2 BASIC27.13■■□□□ 1.93
COL17A1Q9UMD9 SYNGR1-205ENST00000406293 564 ntTSL 2 BASIC27.13■■□□□ 1.93
COL17A1Q9UMD9 JPH4-203ENST00000544177 1124 ntTSL 2 BASIC27.13■■□□□ 1.93
COL17A1Q9UMD9 AL359881.2-201ENST00000602973 570 ntBASIC27.13■■□□□ 1.93
COL17A1Q9UMD9 STARD3-219ENST00000580611 1989 ntTSL 5 BASIC27.13■■□□□ 1.93
COL17A1Q9UMD9 SDCBP2-201ENST00000339987 1404 ntAPPRIS P1 TSL 1 (best) BASIC27.13■■□□□ 1.93
COL17A1Q9UMD9 ZXDC-201ENST00000336332 2579 ntAPPRIS ALT2 TSL 1 (best) BASIC27.13■■□□□ 1.93
COL17A1Q9UMD9 FAM50B-201ENST00000380272 1628 ntAPPRIS P1 TSL 1 (best) BASIC27.13■■□□□ 1.93
COL17A1Q9UMD9 EBF1-202ENST00000380654 2345 ntTSL 1 (best) BASIC27.13■■□□□ 1.93
COL17A1Q9UMD9 NPM1-201ENST00000296930 1758 ntAPPRIS P1 TSL 1 (best) BASIC27.13■■□□□ 1.93
COL17A1Q9UMD9 SIX5-203ENST00000560168 1975 ntTSL 4 BASIC27.13■■□□□ 1.93
COL17A1Q9UMD9 AP000777.2-201ENST00000539897 501 ntTSL 4 BASIC27.13■■□□□ 1.93
COL17A1Q9UMD9 MIR22HG-204ENST00000571595 767 ntTSL 5 BASIC27.13■■□□□ 1.93
COL17A1Q9UMD9 NPAS4-204ENST00000639555 878 ntTSL 5 BASIC27.13■■□□□ 1.93
COL17A1Q9UMD9 SPOCK3-204ENST00000502330 2180 ntAPPRIS ALT2 TSL 1 (best) BASIC27.12■■□□□ 1.93
COL17A1Q9UMD9 PLEKHG2-202ENST00000409797 2205 ntAPPRIS ALT2 TSL 2 BASIC27.12■■□□□ 1.93
COL17A1Q9UMD9 FAM72B-202ENST00000369390 2396 ntAPPRIS P1 TSL 1 (best) BASIC27.12■■□□□ 1.93
COL17A1Q9UMD9 SUFU-201ENST00000369899 1839 ntTSL 1 (best) BASIC27.12■■□□□ 1.93
COL17A1Q9UMD9 NDOR1-204ENST00000458322 1829 ntTSL 1 (best) BASIC27.12■■□□□ 1.93
COL17A1Q9UMD9 C16orf59-204ENST00000563531 1864 ntAPPRIS ALT2 TSL 5 BASIC27.12■■□□□ 1.93
COL17A1Q9UMD9 AL035252.2-201ENST00000454676 3168 ntTSL 2 BASIC27.12■■□□□ 1.93
COL17A1Q9UMD9 AC003669.1-201ENST00000334569 611 ntBASIC27.12■■□□□ 1.93
COL17A1Q9UMD9 HDAC11-202ENST00000402259 1000 ntTSL 3 BASIC27.12■■□□□ 1.93
COL17A1Q9UMD9 DICER1-AS1-202ENST00000439819 810 ntTSL 3 BASIC27.12■■□□□ 1.93
COL17A1Q9UMD9 BRF1-219ENST00000551787 824 ntTSL 1 (best) BASIC27.12■■□□□ 1.93
COL17A1Q9UMD9 AC010522.1-205ENST00000598031 606 ntAPPRIS P1 TSL 3 BASIC27.12■■□□□ 1.93
COL17A1Q9UMD9 AC008761.3-201ENST00000624803 892 ntBASIC27.12■■□□□ 1.93
COL17A1Q9UMD9 INHA-201ENST00000243786 1468 ntAPPRIS P1 TSL 1 (best) BASIC27.12■■□□□ 1.93
COL17A1Q9UMD9 AC125494.1-203ENST00000396799 1622 ntTSL 1 (best) BASIC27.12■■□□□ 1.93
COL17A1Q9UMD9 LINC01126-201ENST00000623515 1646 ntBASIC27.12■■□□□ 1.93
COL17A1Q9UMD9 AC148477.5-201ENST00000625164 1645 ntBASIC27.12■■□□□ 1.93
COL17A1Q9UMD9 DALRD3-201ENST00000313778 1968 ntTSL 2 BASIC27.11■■□□□ 1.93
COL17A1Q9UMD9 DBNL-217ENST00000468694 2068 ntAPPRIS ALT2 TSL 2 BASIC27.11■■□□□ 1.93
COL17A1Q9UMD9 RTN4RL2-201ENST00000335099 2203 ntAPPRIS P1 TSL 1 (best) BASIC27.11■■□□□ 1.93
COL17A1Q9UMD9 PRELID3B-201ENST00000355937 2626 ntAPPRIS P1 TSL 1 (best) BASIC27.11■■□□□ 1.93
COL17A1Q9UMD9 KCNC2-204ENST00000540018 2168 ntAPPRIS ALT2 TSL 2 BASIC27.11■■□□□ 1.93
COL17A1Q9UMD9 FP475955.4-201ENST00000623131 1990 ntBASIC27.11■■□□□ 1.93
COL17A1Q9UMD9 DAP3-214ENST00000471642 1671 ntTSL 5 BASIC27.11■■□□□ 1.93
COL17A1Q9UMD9 TMEM86B-201ENST00000327042 1637 ntAPPRIS P1 TSL 1 (best) BASIC27.11■■□□□ 1.93
COL17A1Q9UMD9 PLXNB2-214ENST00000614805 1387 ntTSL 5 BASIC27.11■■□□□ 1.93
COL17A1Q9UMD9 H2AFV-207ENST00000446531 1041 ntTSL 2 BASIC27.11■■□□□ 1.93
COL17A1Q9UMD9 OR10S1-201ENST00000531945 1121 ntAPPRIS P2 BASIC27.11■■□□□ 1.93
COL17A1Q9UMD9 COX5A-202ENST00000562233 441 ntTSL 3 BASIC27.11■■□□□ 1.93
COL17A1Q9UMD9 H3F3B-208ENST00000589599 576 ntAPPRIS P1 TSL 3 BASIC27.11■■□□□ 1.93
COL17A1Q9UMD9 HNRNPH1-250ENST00000630639 123 ntTSL 5 BASIC27.11■■□□□ 1.93
COL17A1Q9UMD9 OR10S1-202ENST00000641123 1121 ntAPPRIS ALT2 BASIC27.11■■□□□ 1.93
COL17A1Q9UMD9 DPF1-217ENST00000614244 2356 ntTSL 1 (best) BASIC27.11■■□□□ 1.93
COL17A1Q9UMD9 ZNF397-204ENST00000585800 2046 ntTSL 5 BASIC27.1■■□□□ 1.93
COL17A1Q9UMD9 PCID2-202ENST00000337344 1898 ntAPPRIS P1 TSL 2 BASIC27.1■■□□□ 1.93
COL17A1Q9UMD9 C7orf49-202ENST00000424142 1738 ntTSL 2 BASIC27.1■■□□□ 1.93
COL17A1Q9UMD9 TNFSF9-201ENST00000245817 1665 ntAPPRIS P1 TSL 1 (best) BASIC27.1■■□□□ 1.93
COL17A1Q9UMD9 ACOT2-204ENST00000613168 1553 ntAPPRIS P5 TSL 1 (best) BASIC27.1■■□□□ 1.93
COL17A1Q9UMD9 AP003717.1-202ENST00000537019 1412 ntTSL 5 BASIC27.1■■□□□ 1.93
COL17A1Q9UMD9 RAC2-204ENST00000406508 893 ntTSL 5 BASIC27.1■■□□□ 1.93
COL17A1Q9UMD9 AL627223.1-201ENST00000416693 442 ntBASIC27.1■■□□□ 1.93
COL17A1Q9UMD9 ELFN1-AS1-202ENST00000453348 637 ntTSL 1 (best) BASIC27.1■■□□□ 1.93
COL17A1Q9UMD9 FXYD1-202ENST00000455515 594 ntAPPRIS P1 TSL 2 BASIC27.1■■□□□ 1.93
COL17A1Q9UMD9 RNASET2-206ENST00000476238 887 ntAPPRIS P1 TSL 5 BASIC27.1■■□□□ 1.93
COL17A1Q9UMD9 AC067863.1-201ENST00000494933 530 ntBASIC27.1■■□□□ 1.93
COL17A1Q9UMD9 APBB2-208ENST00000504305 1274 ntTSL 5 BASIC27.1■■□□□ 1.93
COL17A1Q9UMD9 AC023355.1-201ENST00000560323 752 ntTSL 3 BASIC27.1■■□□□ 1.93
COL17A1Q9UMD9 DCTPP1-204ENST00000568434 853 ntTSL 2 BASIC27.1■■□□□ 1.93
COL17A1Q9UMD9 NAB2-202ENST00000342556 2318 ntTSL 5 BASIC27.1■■□□□ 1.93
COL17A1Q9UMD9 DMKN-213ENST00000447113 1611 ntAPPRIS ALT2 TSL 1 (best) BASIC27.1■■□□□ 1.93
COL17A1Q9UMD9 LONP1-203ENST00000585374 2882 ntTSL 5 BASIC27.09■■□□□ 1.93
COL17A1Q9UMD9 AC010460.3-201ENST00000511359 1579 ntBASIC27.09■■□□□ 1.93
COL17A1Q9UMD9 EGR3-204ENST00000522910 1553 ntAPPRIS ALT1 TSL 2 BASIC27.09■■□□□ 1.93
COL17A1Q9UMD9 CCDC47-202ENST00000403162 2195 ntAPPRIS P1 TSL 2 BASIC27.09■■□□□ 1.93
COL17A1Q9UMD9 VWA8-AS1-201ENST00000611103 2079 ntTSL 2 BASIC27.09■■□□□ 1.93
COL17A1Q9UMD9 SNX17-201ENST00000233575 2044 ntAPPRIS P1 TSL 1 (best) BASIC27.09■■□□□ 1.93
COL17A1Q9UMD9 CD1B-201ENST00000368168 1395 ntAPPRIS P1 TSL 1 (best) BASIC27.09■■□□□ 1.93
COL17A1Q9UMD9 AC105285.1-202ENST00000499322 1866 ntTSL 1 (best) BASIC27.09■■□□□ 1.93
COL17A1Q9UMD9 AOC3-207ENST00000617500 2392 ntTSL 4 BASIC27.09■■□□□ 1.93
COL17A1Q9UMD9 PSMA7-201ENST00000370858 925 ntTSL 2 BASIC27.09■■□□□ 1.93
COL17A1Q9UMD9 ADIRF-201ENST00000372013 917 ntAPPRIS P1 TSL 1 (best) BASIC27.09■■□□□ 1.93
COL17A1Q9UMD9 NFKBIB-202ENST00000392079 991 ntTSL 5 BASIC27.09■■□□□ 1.93
COL17A1Q9UMD9 AC245100.3-201ENST00000441281 285 ntBASIC27.09■■□□□ 1.93
COL17A1Q9UMD9 FAM207CP-201ENST00000443486 507 ntBASIC27.09■■□□□ 1.93
COL17A1Q9UMD9 DHRS12-203ENST00000444610 1162 ntAPPRIS P1 TSL 1 (best) BASIC27.09■■□□□ 1.93
COL17A1Q9UMD9 CD63-210ENST00000550776 870 ntTSL 5 BASIC27.09■■□□□ 1.93
COL17A1Q9UMD9 AC244153.1-203ENST00000622796 419 ntTSL 2 BASIC27.09■■□□□ 1.93
COL17A1Q9UMD9 FAM157B-201ENST00000446912 1795 ntTSL 2 BASIC27.09■■□□□ 1.93
COL17A1Q9UMD9 GRB14-201ENST00000263915 2382 ntAPPRIS P1 TSL 1 (best) BASIC27.09■■□□□ 1.93
COL17A1Q9UMD9 MOK-201ENST00000361847 1940 ntAPPRIS P3 TSL 1 (best) BASIC27.09■■□□□ 1.93
COL17A1Q9UMD9 FASTK-202ENST00000353841 1402 ntTSL 1 (best) BASIC27.09■■□□□ 1.93
COL17A1Q9UMD9 CAPS-201ENST00000452990 1789 ntTSL 5 BASIC27.08■■□□□ 1.93
COL17A1Q9UMD9 PTHLH-203ENST00000395872 1318 ntAPPRIS ALT1 TSL 5 BASIC27.08■■□□□ 1.93
COL17A1Q9UMD9 HDAC2-201ENST00000368632 2084 ntTSL 2 BASIC27.08■■□□□ 1.93
COL17A1Q9UMD9 AC109309.1-201ENST00000418995 435 ntTSL 3 BASIC27.08■■□□□ 1.93
COL17A1Q9UMD9 UFL1-AS1-201ENST00000430796 548 ntTSL 3 BASIC27.08■■□□□ 1.93
COL17A1Q9UMD9 LEPROTL1-204ENST00000518192 847 ntTSL 3 BASIC27.08■■□□□ 1.93
COL17A1Q9UMD9 LINC02560-201ENST00000596379 459 ntBASIC27.08■■□□□ 1.93
COL17A1Q9UMD9 REXO1L3P-201ENST00000622202 1288 ntBASIC27.08■■□□□ 1.93
COL17A1Q9UMD9 AL805961.1-202ENST00000641562 540 ntBASIC27.08■■□□□ 1.93
Retrieved 100 of 98,524 protein–RNA pairs in 35.6 ms