Protein–RNA interactions for Protein: Q9H611

PIF1, ATP-dependent DNA helicase PIF1, humanhuman

Predictions only

Length 641 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PIF1Q9H611 AC019257.1-201ENST00000517676 557 ntTSL 5 BASIC17.26■□□□□ 0.35
PIF1Q9H611 COX6C-208ENST00000522940 694 ntAPPRIS P1 TSL 3 BASIC17.26■□□□□ 0.35
PIF1Q9H611 TMEM9B-203ENST00000528117 949 ntTSL 2 BASIC17.26■□□□□ 0.35
PIF1Q9H611 AF186192.3-201ENST00000583427 947 ntBASIC17.26■□□□□ 0.35
PIF1Q9H611 AC091551.1-201ENST00000590722 1228 ntAPPRIS P1 TSL 2 BASIC17.26■□□□□ 0.35
PIF1Q9H611 GGA1-203ENST00000343632 3159 ntAPPRIS P1 TSL 1 (best) BASIC17.26■□□□□ 0.35
PIF1Q9H611 TMEM65-201ENST00000297632 9029 ntAPPRIS P1 TSL 1 (best) BASIC17.26■□□□□ 0.35
PIF1Q9H611 ADARB1-202ENST00000360697 6604 ntTSL 1 (best) BASIC17.26■□□□□ 0.35
PIF1Q9H611 AC006116.8-202ENST00000587620 1550 ntBASIC17.26■□□□□ 0.35
PIF1Q9H611 NDUFS7-210ENST00000539480 1743 ntTSL 2 BASIC17.26■□□□□ 0.35
PIF1Q9H611 SMOC1-201ENST00000361956 2040 ntAPPRIS ALT1 TSL 1 (best) BASIC17.26■□□□□ 0.35
PIF1Q9H611 SDHAP2-201ENST00000455183 2001 ntBASIC17.26■□□□□ 0.35
PIF1Q9H611 MAPT-205ENST00000351559 5811 ntAPPRIS ALT2 TSL 1 (best) BASIC17.26■□□□□ 0.35
PIF1Q9H611 SRRM2-201ENST00000301740 9353 ntAPPRIS P1 TSL 1 (best) BASIC17.26■□□□□ 0.35
PIF1Q9H611 SIRPAP1-201ENST00000448467 1770 ntBASIC17.25■□□□□ 0.35
PIF1Q9H611 ETV2-203ENST00000402764 1487 ntAPPRIS P3 TSL 1 (best) BASIC17.25■□□□□ 0.35
PIF1Q9H611 L1CAM-203ENST00000370055 4655 ntTSL 5 BASIC17.25■□□□□ 0.35
PIF1Q9H611 EML2-203ENST00000536630 2791 ntAPPRIS ALT2 TSL 2 BASIC17.25■□□□□ 0.35
PIF1Q9H611 ARL4C-202ENST00000390645 4013 ntAPPRIS P1 BASIC17.25■□□□□ 0.35
PIF1Q9H611 UROS-202ENST00000368778 1556 ntTSL 2 BASIC17.25■□□□□ 0.35
PIF1Q9H611 CCDC154-202ENST00000409671 2561 ntAPPRIS ALT2 TSL 1 (best) BASIC17.25■□□□□ 0.35
PIF1Q9H611 CBSL-202ENST00000617706 2563 ntAPPRIS P1 TSL 1 (best) BASIC17.25■□□□□ 0.35
PIF1Q9H611 FBXL22-202ENST00000534939 2443 ntAPPRIS ALT2 TSL 3 BASIC17.25■□□□□ 0.35
PIF1Q9H611 RAC1-202ENST00000356142 907 ntTSL 1 (best) BASIC17.25■□□□□ 0.35
PIF1Q9H611 CDKN1B-202ENST00000396340 897 ntTSL 3 BASIC17.25■□□□□ 0.35
PIF1Q9H611 AL049780.2-201ENST00000556236 367 ntTSL 3 BASIC17.25■□□□□ 0.35
PIF1Q9H611 AL096870.2-201ENST00000565988 2108 ntTSL 1 (best) BASIC17.25■□□□□ 0.35
PIF1Q9H611 AC026271.3-201ENST00000571884 352 ntBASIC17.25■□□□□ 0.35
PIF1Q9H611 MNT-208ENST00000575394 606 ntTSL 4 BASIC17.25■□□□□ 0.35
PIF1Q9H611 METTL23-208ENST00000588822 1049 ntTSL 3 BASIC17.25■□□□□ 0.35
PIF1Q9H611 AC073195.1-201ENST00000607241 877 ntBASIC17.25■□□□□ 0.35
PIF1Q9H611 NSUN5-201ENST00000252594 1672 ntAPPRIS ALT2 TSL 1 (best) BASIC17.25■□□□□ 0.35
PIF1Q9H611 IRF5-202ENST00000357234 1680 ntTSL 1 (best) BASIC17.25■□□□□ 0.35
PIF1Q9H611 ENOPH1-202ENST00000505846 1689 ntTSL 1 (best) BASIC17.25■□□□□ 0.35
PIF1Q9H611 C14orf28-201ENST00000325192 2915 ntAPPRIS P1 TSL 1 (best) BASIC17.25■□□□□ 0.35
PIF1Q9H611 LUC7L-221ENST00000629543 1520 ntTSL 5 BASIC17.25■□□□□ 0.35
PIF1Q9H611 PTPRA-205ENST00000399903 3337 ntTSL 5 BASIC17.25■□□□□ 0.35
PIF1Q9H611 ASXL1-212ENST00000620121 5374 ntAPPRIS ALT2 TSL 5 BASIC17.25■□□□□ 0.35
PIF1Q9H611 CMTM3-214ENST00000567572 1934 ntAPPRIS P1 TSL 1 (best) BASIC17.25■□□□□ 0.35
PIF1Q9H611 MMP17-206ENST00000535291 2301 ntAPPRIS ALT2 TSL 1 (best) BASIC17.25■□□□□ 0.35
PIF1Q9H611 WDFY4-202ENST00000360890 2193 ntTSL 1 (best) BASIC17.25■□□□□ 0.35
PIF1Q9H611 DNM2-201ENST00000355667 3541 ntTSL 1 (best) BASIC17.25■□□□□ 0.35
PIF1Q9H611 AL138752.2-201ENST00000540557 2591 ntAPPRIS P1 TSL 5 BASIC17.25■□□□□ 0.35
PIF1Q9H611 BTNL9-202ENST00000376841 1626 ntTSL 1 (best) BASIC17.25■□□□□ 0.35
PIF1Q9H611 SMAD3-201ENST00000327367 6247 ntAPPRIS P1 TSL 1 (best) BASIC17.25■□□□□ 0.35
PIF1Q9H611 NPTN-202ENST00000351217 2817 ntTSL 1 (best) BASIC17.25■□□□□ 0.35
PIF1Q9H611 YKT6-201ENST00000223369 2696 ntAPPRIS P1 TSL 1 (best) BASIC17.24■□□□□ 0.35
PIF1Q9H611 SPRYD7-201ENST00000361840 3053 ntAPPRIS P1 TSL 1 (best) BASIC17.24■□□□□ 0.35
PIF1Q9H611 ZDHHC20-202ENST00000382466 5338 ntAPPRIS P3 TSL 1 (best) BASIC17.24■□□□□ 0.35
PIF1Q9H611 NIFK-201ENST00000285814 1734 ntAPPRIS P1 TSL 1 (best) BASIC17.24■□□□□ 0.35
PIF1Q9H611 OARD1-202ENST00000424266 1337 ntAPPRIS P1 TSL 2 BASIC17.24■□□□□ 0.35
PIF1Q9H611 FGFR4-207ENST00000502906 2638 ntAPPRIS P4 TSL 1 (best) BASIC17.24■□□□□ 0.35
PIF1Q9H611 ZNF211-211ENST00000541801 2629 ntAPPRIS ALT2 TSL 3 BASIC17.24■□□□□ 0.35
PIF1Q9H611 FAM214B-206ENST00000603301 3256 ntAPPRIS P1 TSL 1 (best) BASIC17.24■□□□□ 0.35
PIF1Q9H611 MUM1-216ENST00000627377 2235 ntAPPRIS ALT2 TSL 5 BASIC17.24■□□□□ 0.35
PIF1Q9H611 DNM3-203ENST00000367733 2322 ntTSL 1 (best) BASIC17.24■□□□□ 0.35
PIF1Q9H611 TAF1C-222ENST00000570117 2349 ntAPPRIS ALT2 TSL 2 BASIC17.24■□□□□ 0.35
PIF1Q9H611 AANAT-201ENST00000250615 1913 ntTSL 1 (best) BASIC17.24■□□□□ 0.35
PIF1Q9H611 ICAM4-202ENST00000380770 1211 ntAPPRIS P3 TSL 1 (best) BASIC17.24■□□□□ 0.35
PIF1Q9H611 MIR718-201ENST00000390190 70 ntBASIC17.24■□□□□ 0.35
PIF1Q9H611 POLR2D-202ENST00000409698 806 ntTSL 2 BASIC17.24■□□□□ 0.35
PIF1Q9H611 CNOT8-224ENST00000523698 862 ntTSL 2 BASIC17.24■□□□□ 0.35
PIF1Q9H611 AC091564.5-201ENST00000526456 820 ntTSL 4 BASIC17.24■□□□□ 0.35
PIF1Q9H611 EFTUD1P1-201ENST00000558187 596 ntTSL 4 BASIC17.24■□□□□ 0.35
PIF1Q9H611 AL031600.3-201ENST00000566287 1124 ntTSL 5 BASIC17.24■□□□□ 0.35
PIF1Q9H611 OAZ1-211ENST00000602676 1148 ntAPPRIS P3 TSL 5 BASIC17.24■□□□□ 0.35
PIF1Q9H611 GABRB2-206ENST00000520240 2030 ntAPPRIS P1 TSL 1 (best) BASIC17.24■□□□□ 0.35
PIF1Q9H611 FAM110A-201ENST00000246100 1619 ntAPPRIS P1 TSL 1 (best) BASIC17.24■□□□□ 0.35
PIF1Q9H611 MOB3A-201ENST00000357066 3391 ntAPPRIS P1 TSL 1 (best) BASIC17.24■□□□□ 0.35
PIF1Q9H611 WASF1-205ENST00000392587 2675 ntAPPRIS P1 TSL 1 (best) BASIC17.24■□□□□ 0.35
PIF1Q9H611 FAM58A-204ENST00000576892 1306 ntAPPRIS ALT2 TSL 1 (best) BASIC17.23■□□□□ 0.35
PIF1Q9H611 ADCK5-201ENST00000308860 1949 ntAPPRIS P1 TSL 1 (best) BASIC17.23■□□□□ 0.35
PIF1Q9H611 AGAP6-201ENST00000374056 2703 ntAPPRIS ALT2 TSL 1 (best) BASIC17.23■□□□□ 0.35
PIF1Q9H611 MINK1-202ENST00000355280 4961 ntAPPRIS P4 TSL 1 (best) BASIC17.23■□□□□ 0.35
PIF1Q9H611 EWSR1-206ENST00000397938 2654 ntAPPRIS ALT2 TSL 1 (best) BASIC17.23■□□□□ 0.35
PIF1Q9H611 CAP2-208ENST00000611958 2686 ntTSL 2 BASIC17.23■□□□□ 0.35
PIF1Q9H611 CCDC88C-203ENST00000389856 1641 ntTSL 1 (best) BASIC17.23■□□□□ 0.35
PIF1Q9H611 LYPD1-201ENST00000345008 1033 ntTSL 1 (best) BASIC17.23■□□□□ 0.35
PIF1Q9H611 PEX7-202ENST00000367756 680 ntTSL 3 BASIC17.23■□□□□ 0.35
PIF1Q9H611 TNFRSF1B-204ENST00000536782 557 ntTSL 1 (best) BASIC17.23■□□□□ 0.35
PIF1Q9H611 TMEM72-203ENST00000544540 1018 ntTSL 1 (best) BASIC17.23■□□□□ 0.35
PIF1Q9H611 STAC3-202ENST00000546246 1014 ntTSL 2 BASIC17.23■□□□□ 0.35
PIF1Q9H611 RPS15-203ENST00000586096 570 ntTSL 2 BASIC17.23■□□□□ 0.35
PIF1Q9H611 FLT3LG-211ENST00000600429 984 ntAPPRIS P1 TSL 1 (best) BASIC17.23■□□□□ 0.35
PIF1Q9H611 RAD23A-201ENST00000316856 1736 ntAPPRIS ALT1 TSL 1 (best) BASIC17.23■□□□□ 0.35
PIF1Q9H611 AC022211.2-201ENST00000585075 2527 ntBASIC17.23■□□□□ 0.35
PIF1Q9H611 STRN4-204ENST00000539396 2608 ntTSL 2 BASIC17.23■□□□□ 0.35
PIF1Q9H611 PHKA1-205ENST00000541944 5944 ntAPPRIS ALT1 TSL 1 (best) BASIC17.23■□□□□ 0.35
PIF1Q9H611 ATP6AP2-214ENST00000636287 1904 ntAPPRIS ALT2 TSL 5 BASIC17.23■□□□□ 0.35
PIF1Q9H611 CYP2W1-202ENST00000340150 2361 ntTSL 2 BASIC17.23■□□□□ 0.35
PIF1Q9H611 DAPK1-202ENST00000408954 5892 ntAPPRIS P1 TSL 2 BASIC17.23■□□□□ 0.35
PIF1Q9H611 FSCN2-201ENST00000334850 1551 ntTSL 5 BASIC17.23■□□□□ 0.35
PIF1Q9H611 IL12RB2-202ENST00000371000 2454 ntTSL 2 BASIC17.23■□□□□ 0.35
PIF1Q9H611 RNF2-201ENST00000367509 1677 ntTSL 2 BASIC17.23■□□□□ 0.35
PIF1Q9H611 ILF3-203ENST00000449870 6119 ntAPPRIS ALT2 TSL 1 (best) BASIC17.23■□□□□ 0.35
PIF1Q9H611 WDR59-202ENST00000536050 1752 ntTSL 2 BASIC17.23■□□□□ 0.35
PIF1Q9H611 MME-217ENST00000616757 1315 ntTSL 5 BASIC17.22■□□□□ 0.35
PIF1Q9H611 VAC14-201ENST00000261776 3099 ntAPPRIS P1 TSL 1 (best) BASIC17.22■□□□□ 0.35
PIF1Q9H611 PRSS36-207ENST00000569305 2723 ntAPPRIS ALT2 TSL 1 (best) BASIC17.22■□□□□ 0.35
PIF1Q9H611 IMMP2L-202ENST00000405709 1522 ntAPPRIS P1 TSL 1 (best) BASIC17.22■□□□□ 0.35
Retrieved 100 of 98,524 protein–RNA pairs in 96.2 ms