Protein–RNA interactions for Protein: Q8N2C3

DEPDC4, DEP domain-containing protein 4, humanhuman

Predictions only

Length 294 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
DEPDC4Q8N2C3 SATB2-202ENST00000417098 5730 ntAPPRIS P1 TSL 2 BASIC16.81■□□□□ 0.28
DEPDC4Q8N2C3 SOX15-201ENST00000250055 1396 ntAPPRIS P1 TSL 1 (best) BASIC16.81■□□□□ 0.28
DEPDC4Q8N2C3 GGPS1-206ENST00000488594 1396 ntAPPRIS P1 TSL 1 (best) BASIC16.81■□□□□ 0.28
DEPDC4Q8N2C3 STK4-201ENST00000372801 2038 ntTSL 2 BASIC16.81■□□□□ 0.28
DEPDC4Q8N2C3 FERMT2-203ENST00000395631 3369 ntAPPRIS P1 TSL 1 (best) BASIC16.81■□□□□ 0.28
DEPDC4Q8N2C3 ZNF133-212ENST00000622607 2660 ntAPPRIS ALT2 TSL 4 BASIC16.81■□□□□ 0.28
DEPDC4Q8N2C3 LINC01215-201ENST00000607746 2592 ntTSL 3 BASIC16.81■□□□□ 0.28
DEPDC4Q8N2C3 JPH2-201ENST00000342272 1923 ntTSL 1 (best) BASIC16.81■□□□□ 0.28
DEPDC4Q8N2C3 NT5C1A-201ENST00000235628 1107 ntAPPRIS P1 TSL 1 (best) BASIC16.81■□□□□ 0.28
DEPDC4Q8N2C3 MPC2-201ENST00000271373 798 ntAPPRIS P1 TSL 1 (best) BASIC16.81■□□□□ 0.28
DEPDC4Q8N2C3 MIR1238-201ENST00000408483 83 ntBASIC16.81■□□□□ 0.28
DEPDC4Q8N2C3 PRSS44-201ENST00000515154 1146 ntBASIC16.81■□□□□ 0.28
DEPDC4Q8N2C3 ZNF667-AS1-206ENST00000591797 535 ntTSL 5 BASIC16.81■□□□□ 0.28
DEPDC4Q8N2C3 AC016737.2-201ENST00000609273 358 ntTSL 3 BASIC16.81■□□□□ 0.28
DEPDC4Q8N2C3 MIR6786-201ENST00000616843 113 ntBASIC16.81■□□□□ 0.28
DEPDC4Q8N2C3 ARID1A-205ENST00000457599 6268 ntAPPRIS ALT2 TSL 5 BASIC16.81■□□□□ 0.28
DEPDC4Q8N2C3 TEF-201ENST00000266304 4394 ntAPPRIS P1 TSL 1 (best) BASIC16.81■□□□□ 0.28
DEPDC4Q8N2C3 HOXB8-201ENST00000239144 1823 ntAPPRIS P2 TSL 2 BASIC16.81■□□□□ 0.28
DEPDC4Q8N2C3 RGS14-201ENST00000408923 2415 ntAPPRIS P1 TSL 1 (best) BASIC16.81■□□□□ 0.28
DEPDC4Q8N2C3 SATB1-201ENST00000338745 7810 ntAPPRIS P1 TSL 1 (best) BASIC16.81■□□□□ 0.28
DEPDC4Q8N2C3 PLPPR4-202ENST00000370185 5369 ntAPPRIS P1 TSL 1 (best) BASIC16.81■□□□□ 0.28
DEPDC4Q8N2C3 ARHGAP22-205ENST00000417912 2352 ntTSL 1 (best) BASIC16.81■□□□□ 0.28
DEPDC4Q8N2C3 AC124067.4-201ENST00000519691 2379 ntBASIC16.81■□□□□ 0.28
DEPDC4Q8N2C3 SLCO6A1-202ENST00000389019 2340 ntTSL 1 (best) BASIC16.81■□□□□ 0.28
DEPDC4Q8N2C3 TRIM45-203ENST00000369464 3495 ntTSL 1 (best) BASIC16.81■□□□□ 0.28
DEPDC4Q8N2C3 SLC12A9-215ENST00000540482 2269 ntTSL 2 BASIC16.81■□□□□ 0.28
DEPDC4Q8N2C3 OSBPL1A-204ENST00000399443 3317 ntTSL 1 (best) BASIC16.81■□□□□ 0.28
DEPDC4Q8N2C3 BTBD1-201ENST00000261721 3297 ntAPPRIS P1 TSL 1 (best) BASIC16.81■□□□□ 0.28
DEPDC4Q8N2C3 TSC2-204ENST00000401874 5421 ntAPPRIS ALT2 TSL 1 (best) BASIC16.81■□□□□ 0.28
DEPDC4Q8N2C3 CELF3-201ENST00000290583 3246 ntAPPRIS P3 TSL 1 (best) BASIC16.81■□□□□ 0.28
DEPDC4Q8N2C3 RAB23-202ENST00000468148 4837 ntAPPRIS P1 TSL 1 (best) BASIC16.81■□□□□ 0.28
DEPDC4Q8N2C3 CTSA-204ENST00000372484 2149 ntAPPRIS P1 TSL 1 (best) BASIC16.81■□□□□ 0.28
DEPDC4Q8N2C3 CEP78-204ENST00000415759 2623 ntAPPRIS ALT2 TSL 5 BASIC16.81■□□□□ 0.28
DEPDC4Q8N2C3 AC120049.1-201ENST00000592638 2065 ntTSL 1 (best) BASIC16.81■□□□□ 0.28
DEPDC4Q8N2C3 TMEM127-202ENST00000432959 3099 ntAPPRIS P1 TSL 1 (best) BASIC16.81■□□□□ 0.28
DEPDC4Q8N2C3 SLC23A3-207ENST00000455516 2048 ntTSL 2 BASIC16.8■□□□□ 0.28
DEPDC4Q8N2C3 GAL3ST4-201ENST00000360039 2537 ntAPPRIS P1 TSL 1 (best) BASIC16.8■□□□□ 0.28
DEPDC4Q8N2C3 KLHDC7B-201ENST00000395676 2991 ntAPPRIS P1 BASIC16.8■□□□□ 0.28
DEPDC4Q8N2C3 CNST-202ENST00000366512 2422 ntTSL 1 (best) BASIC16.8■□□□□ 0.28
DEPDC4Q8N2C3 SLC35E2-201ENST00000246421 1430 ntAPPRIS P3 TSL 1 (best) BASIC16.8■□□□□ 0.28
DEPDC4Q8N2C3 LHX3-203ENST00000619587 2698 ntTSL 1 (best) BASIC16.8■□□□□ 0.28
DEPDC4Q8N2C3 AMIGO2-202ENST00000429635 3058 ntAPPRIS P1 TSL 1 (best) BASIC16.8■□□□□ 0.28
DEPDC4Q8N2C3 PLD3-206ENST00000409587 2180 ntAPPRIS P1 TSL 5 BASIC16.8■□□□□ 0.28
DEPDC4Q8N2C3 FXYD6-204ENST00000526014 2171 ntAPPRIS P2 TSL 1 (best) BASIC16.8■□□□□ 0.28
DEPDC4Q8N2C3 LBX1-AS1-201ENST00000430651 2553 ntTSL 2 BASIC16.8■□□□□ 0.28
DEPDC4Q8N2C3 UBB-203ENST00000395839 1012 ntAPPRIS P1 TSL 2 BASIC16.8■□□□□ 0.28
DEPDC4Q8N2C3 AC108025.1-201ENST00000453678 1058 ntTSL 5 BASIC16.8■□□□□ 0.28
DEPDC4Q8N2C3 TSPY15P-201ENST00000457163 923 ntBASIC16.8■□□□□ 0.28
DEPDC4Q8N2C3 KRT18P41-201ENST00000518924 1277 ntBASIC16.8■□□□□ 0.28
DEPDC4Q8N2C3 YPEL3-207ENST00000566134 761 ntTSL 5 BASIC16.8■□□□□ 0.28
DEPDC4Q8N2C3 DGCR10-201ENST00000609839 495 ntBASIC16.8■□□□□ 0.28
DEPDC4Q8N2C3 CROCCP4-202ENST00000633627 573 ntTSL 3 BASIC16.8■□□□□ 0.28
DEPDC4Q8N2C3 HAUS4-218ENST00000555986 1626 ntTSL 5 BASIC16.8■□□□□ 0.28
DEPDC4Q8N2C3 LOXL3-205ENST00000409986 2005 ntTSL 2 BASIC16.8■□□□□ 0.28
DEPDC4Q8N2C3 PML-211ENST00000564428 1985 ntAPPRIS ALT2 TSL 1 (best) BASIC16.8■□□□□ 0.28
DEPDC4Q8N2C3 AL096828.2-201ENST00000567259 1965 ntBASIC16.8■□□□□ 0.28
DEPDC4Q8N2C3 STYXL1-208ENST00000451157 1570 ntTSL 1 (best) BASIC16.8■□□□□ 0.28
DEPDC4Q8N2C3 TXNL4A-201ENST00000269601 3504 ntAPPRIS P1 TSL 1 (best) BASIC16.8■□□□□ 0.28
DEPDC4Q8N2C3 SRF-201ENST00000265354 4202 ntAPPRIS P1 TSL 1 (best) BASIC16.8■□□□□ 0.28
DEPDC4Q8N2C3 PP7080-201ENST00000342584 1876 ntTSL 1 (best) BASIC16.8■□□□□ 0.28
DEPDC4Q8N2C3 ADGRB2-206ENST00000398556 4879 ntAPPRIS ALT2 TSL 5 BASIC16.8■□□□□ 0.28
DEPDC4Q8N2C3 GNAZ-203ENST00000615612 3333 ntAPPRIS P1 TSL 1 (best) BASIC16.8■□□□□ 0.28
DEPDC4Q8N2C3 ISM1-201ENST00000262487 2593 ntAPPRIS P1 TSL 5 BASIC16.8■□□□□ 0.28
DEPDC4Q8N2C3 WNT2-201ENST00000265441 2907 ntAPPRIS P1 TSL 1 (best) BASIC16.8■□□□□ 0.28
DEPDC4Q8N2C3 PRCC-201ENST00000271526 2105 ntAPPRIS P1 TSL 1 (best) BASIC16.79■□□□□ 0.28
DEPDC4Q8N2C3 STXBP3-201ENST00000370008 2478 ntAPPRIS P1 TSL 1 (best) BASIC16.79■□□□□ 0.28
DEPDC4Q8N2C3 LSR-212ENST00000602122 2480 ntAPPRIS ALT2 TSL 2 BASIC16.79■□□□□ 0.28
DEPDC4Q8N2C3 PDE2A-226ENST00000544570 3119 ntTSL 5 BASIC16.79■□□□□ 0.28
DEPDC4Q8N2C3 DUS1L-201ENST00000306796 2068 ntAPPRIS P1 TSL 1 (best) BASIC16.79■□□□□ 0.28
DEPDC4Q8N2C3 BACE1-201ENST00000313005 6326 ntAPPRIS P1 TSL 1 (best) BASIC16.79■□□□□ 0.28
DEPDC4Q8N2C3 AC010186.2-201ENST00000575094 2612 ntTSL 2 BASIC16.79■□□□□ 0.28
DEPDC4Q8N2C3 PRR29-AS1-202ENST00000580942 2926 ntTSL 2 BASIC16.79■□□□□ 0.28
DEPDC4Q8N2C3 ZNF385C-205ENST00000618554 2596 ntTSL 5 BASIC16.79■□□□□ 0.28
DEPDC4Q8N2C3 RHOBTB1-201ENST00000337910 4473 ntAPPRIS P1 TSL 1 (best) BASIC16.79■□□□□ 0.28
DEPDC4Q8N2C3 GNG5-202ENST00000370645 790 ntAPPRIS P1 TSL 2 BASIC16.79■□□□□ 0.28
DEPDC4Q8N2C3 ID1-202ENST00000376112 994 ntAPPRIS P1 TSL 1 (best) BASIC16.79■□□□□ 0.28
DEPDC4Q8N2C3 MIR1224-201ENST00000408193 85 ntBASIC16.79■□□□□ 0.28
DEPDC4Q8N2C3 AL365259.1-203ENST00000451660 707 ntTSL 3 BASIC16.79■□□□□ 0.28
DEPDC4Q8N2C3 TAPBP-236ENST00000456592 817 ntTSL 5 BASIC16.79■□□□□ 0.28
DEPDC4Q8N2C3 NAPSB-206ENST00000562112 1266 ntBASIC16.79■□□□□ 0.28
DEPDC4Q8N2C3 AC010531.1-201ENST00000568879 953 ntAPPRIS P1 TSL 4 BASIC16.79■□□□□ 0.28
DEPDC4Q8N2C3 AQP4-AS1-204ENST00000582605 525 ntTSL 4 BASIC16.79■□□□□ 0.28
DEPDC4Q8N2C3 CIRBP-217ENST00000588230 1013 ntTSL 5 BASIC16.79■□□□□ 0.28
DEPDC4Q8N2C3 AP000525.1-201ENST00000608286 694 ntBASIC16.79■□□□□ 0.28
DEPDC4Q8N2C3 KDM6A-212ENST00000543216 5655 ntTSL 1 (best) BASIC16.79■□□□□ 0.28
DEPDC4Q8N2C3 GMCL1P1-201ENST00000463439 1581 ntBASIC16.79■□□□□ 0.28
DEPDC4Q8N2C3 VPS26B-202ENST00000525095 1558 ntAPPRIS P1 TSL 5 BASIC16.79■□□□□ 0.28
DEPDC4Q8N2C3 PCDHA12-202ENST00000613593 2588 ntBASIC16.79■□□□□ 0.28
DEPDC4Q8N2C3 KRT8P11-201ENST00000409686 1436 ntBASIC16.79■□□□□ 0.28
DEPDC4Q8N2C3 ASCL5-202ENST00000458416 1420 ntAPPRIS P1 BASIC16.79■□□□□ 0.28
DEPDC4Q8N2C3 GABARAPL1-201ENST00000266458 1957 ntAPPRIS P1 TSL 1 (best) BASIC16.78■□□□□ 0.28
DEPDC4Q8N2C3 ZCCHC23-201ENST00000500526 1951 ntTSL 2 BASIC16.78■□□□□ 0.28
DEPDC4Q8N2C3 LRRC3-201ENST00000291592 5869 ntAPPRIS P1 TSL 1 (best) BASIC16.78■□□□□ 0.28
DEPDC4Q8N2C3 TRAM1-201ENST00000262213 2785 ntAPPRIS P1 TSL 1 (best) BASIC16.78■□□□□ 0.28
DEPDC4Q8N2C3 RARA-206ENST00000425707 3041 ntTSL 1 (best) BASIC16.78■□□□□ 0.28
DEPDC4Q8N2C3 JAKMIP1-208ENST00000637373 1362 ntTSL 5 BASIC16.78■□□□□ 0.28
DEPDC4Q8N2C3 PHF20L1-201ENST00000220847 3297 ntTSL 5 BASIC16.78■□□□□ 0.28
DEPDC4Q8N2C3 RGS3-211ENST00000462403 2155 ntTSL 1 (best) BASIC16.78■□□□□ 0.28
DEPDC4Q8N2C3 AP3D1-201ENST00000345016 4870 ntAPPRIS P3 TSL 1 (best) BASIC16.78■□□□□ 0.28
DEPDC4Q8N2C3 INPP5A-203ENST00000368594 2967 ntAPPRIS P1 TSL 1 (best) BASIC16.78■□□□□ 0.28
Retrieved 100 of 98,524 protein–RNA pairs in 62 ms