Protein–RNA interactions for Protein: Q9UPM8

AP4E1, AP-4 complex subunit epsilon-1, humanhuman

Predictions only

Length 1,137 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
AP4E1Q9UPM8 GATB-213ENST00000515812 1893 ntTSL 5 BASIC18.75■□□□□ 0.59
AP4E1Q9UPM8 NCCRP1-201ENST00000339852 1978 ntAPPRIS P1 TSL 1 (best) BASIC18.75■□□□□ 0.59
AP4E1Q9UPM8 POMC-204ENST00000405623 1426 ntAPPRIS P1 TSL 1 (best) BASIC18.75■□□□□ 0.59
AP4E1Q9UPM8 MPP5-201ENST00000261681 5552 ntAPPRIS P1 TSL 1 (best) BASIC18.75■□□□□ 0.59
AP4E1Q9UPM8 SDC1-203ENST00000403076 1523 ntTSL 1 (best) BASIC18.75■□□□□ 0.59
AP4E1Q9UPM8 UBQLN4-201ENST00000368309 3576 ntAPPRIS P1 TSL 1 (best) BASIC18.75■□□□□ 0.59
AP4E1Q9UPM8 HTR7P1-202ENST00000624664 4411 ntBASIC18.75■□□□□ 0.59
AP4E1Q9UPM8 GOLGA6L10-207ENST00000610657 1705 ntAPPRIS P2 TSL 2 BASIC18.75■□□□□ 0.59
AP4E1Q9UPM8 NUDT8-201ENST00000301490 809 ntAPPRIS P3 TSL 1 (best) BASIC18.75■□□□□ 0.59
AP4E1Q9UPM8 SUSD4-203ENST00000344029 1056 ntTSL 1 (best) BASIC18.75■□□□□ 0.59
AP4E1Q9UPM8 CCDC7-203ENST00000362006 2133 ntAPPRIS P2 TSL 1 (best) BASIC18.75■□□□□ 0.59
AP4E1Q9UPM8 GUK1-204ENST00000366721 689 ntTSL 3 BASIC18.75■□□□□ 0.59
AP4E1Q9UPM8 UBE2J2-205ENST00000400930 1021 ntTSL 5 BASIC18.75■□□□□ 0.59
AP4E1Q9UPM8 HDAC11-AS1-201ENST00000424112 515 ntTSL 2 BASIC18.75■□□□□ 0.59
AP4E1Q9UPM8 SAPCD2P2-201ENST00000431719 1174 ntBASIC18.75■□□□□ 0.59
AP4E1Q9UPM8 LEF1-AS1-201ENST00000436413 1045 ntTSL 1 (best) BASIC18.75■□□□□ 0.59
AP4E1Q9UPM8 SPDYE13P-201ENST00000445314 798 ntBASIC18.75■□□□□ 0.59
AP4E1Q9UPM8 AP003733.1-201ENST00000491725 852 ntBASIC18.75■□□□□ 0.59
AP4E1Q9UPM8 DUTP2-201ENST00000519164 463 ntBASIC18.75■□□□□ 0.59
AP4E1Q9UPM8 C19orf25-207ENST00000588871 2128 ntTSL 5 BASIC18.75■□□□□ 0.59
AP4E1Q9UPM8 AC020911.2-202ENST00000588945 593 ntTSL 3 BASIC18.75■□□□□ 0.59
AP4E1Q9UPM8 AC004263.2-201ENST00000617183 678 ntBASIC18.75■□□□□ 0.59
AP4E1Q9UPM8 AL772307.1-201ENST00000639363 1066 ntTSL 2 BASIC18.75■□□□□ 0.59
AP4E1Q9UPM8 LARGE2-201ENST00000325468 2522 ntAPPRIS P3 TSL 1 (best) BASIC18.75■□□□□ 0.59
AP4E1Q9UPM8 NAA60-201ENST00000360862 2522 ntTSL 2 BASIC18.75■□□□□ 0.59
AP4E1Q9UPM8 CAMK2B-203ENST00000347193 1577 ntTSL 1 (best) BASIC18.75■□□□□ 0.59
AP4E1Q9UPM8 LINC00311-201ENST00000366314 1566 ntTSL 1 (best) BASIC18.75■□□□□ 0.59
AP4E1Q9UPM8 ZDHHC4-205ENST00000396713 1552 ntAPPRIS P1 TSL 1 (best) BASIC18.75■□□□□ 0.59
AP4E1Q9UPM8 FCGRT-202ENST00000426395 1559 ntAPPRIS P1 TSL 1 (best) BASIC18.75■□□□□ 0.59
AP4E1Q9UPM8 FAM72C-201ENST00000369175 1658 ntTSL 1 (best) BASIC18.75■□□□□ 0.59
AP4E1Q9UPM8 HLA-DQB1-201ENST00000374943 1656 ntBASIC18.75■□□□□ 0.59
AP4E1Q9UPM8 FAM72B-207ENST00000619376 1659 ntTSL 1 (best) BASIC18.75■□□□□ 0.59
AP4E1Q9UPM8 SLC22A18-203ENST00000380574 1755 ntAPPRIS P1 TSL 1 (best) BASIC18.75■□□□□ 0.59
AP4E1Q9UPM8 PEX14-201ENST00000356607 1985 ntAPPRIS P1 TSL 1 (best) BASIC18.75■□□□□ 0.59
AP4E1Q9UPM8 MATN4-205ENST00000537548 1991 ntAPPRIS ALT2 TSL 5 BASIC18.75■□□□□ 0.59
AP4E1Q9UPM8 EEPD1-201ENST00000242108 4765 ntAPPRIS P1 TSL 1 (best) BASIC18.75■□□□□ 0.59
AP4E1Q9UPM8 IGSF9B-206ENST00000533871 5050 ntAPPRIS P2 TSL 5 BASIC18.75■□□□□ 0.59
AP4E1Q9UPM8 ESPN-216ENST00000636330 4731 ntAPPRIS ALT2 TSL 5 BASIC18.75■□□□□ 0.59
AP4E1Q9UPM8 KIF21B-203ENST00000422435 5519 ntTSL 1 (best) BASIC18.75■□□□□ 0.59
AP4E1Q9UPM8 FASTK-202ENST00000353841 1402 ntTSL 1 (best) BASIC18.74■□□□□ 0.59
AP4E1Q9UPM8 PRR36-202ENST00000618550 4456 ntAPPRIS P2 TSL 5 BASIC18.74■□□□□ 0.59
AP4E1Q9UPM8 TSEN34-202ENST00000396383 1548 ntAPPRIS P1 TSL 1 (best) BASIC18.74■□□□□ 0.59
AP4E1Q9UPM8 ARHGEF2-204ENST00000368315 1645 ntTSL 5 BASIC18.74■□□□□ 0.59
AP4E1Q9UPM8 THNSL2-205ENST00000449349 1616 ntTSL 5 BASIC18.74■□□□□ 0.59
AP4E1Q9UPM8 RAD23A-201ENST00000316856 1736 ntAPPRIS ALT1 TSL 1 (best) BASIC18.74■□□□□ 0.59
AP4E1Q9UPM8 TAF15-211ENST00000604841 2140 ntAPPRIS ALT2 TSL 1 (best) BASIC18.74■□□□□ 0.59
AP4E1Q9UPM8 MOAP1-201ENST00000298894 2441 ntAPPRIS P1 TSL 1 (best) BASIC18.74■□□□□ 0.59
AP4E1Q9UPM8 PRSS35-201ENST00000369700 2440 ntAPPRIS P1 TSL 1 (best) BASIC18.74■□□□□ 0.59
AP4E1Q9UPM8 CMPK2-201ENST00000256722 2884 ntAPPRIS P3 TSL 1 (best) BASIC18.74■□□□□ 0.59
AP4E1Q9UPM8 RALGPS1-208ENST00000424082 2362 ntTSL 2 BASIC18.74■□□□□ 0.59
AP4E1Q9UPM8 ADAMTS17-201ENST00000268070 6207 ntAPPRIS P1 TSL 1 (best) BASIC18.74■□□□□ 0.59
AP4E1Q9UPM8 CALHM3-201ENST00000369783 1652 ntAPPRIS P1 TSL 1 (best) BASIC18.74■□□□□ 0.59
AP4E1Q9UPM8 TRIM13-206ENST00000457662 1489 ntAPPRIS P3 TSL 1 (best) BASIC18.74■□□□□ 0.59
AP4E1Q9UPM8 EXOSC5-201ENST00000221233 1118 ntAPPRIS P1 TSL 1 (best) BASIC18.74■□□□□ 0.59
AP4E1Q9UPM8 BEX1-201ENST00000372728 864 ntAPPRIS P1 TSL 1 (best) BASIC18.74■□□□□ 0.59
AP4E1Q9UPM8 BIRC7-203ENST00000395306 593 ntTSL 2 BASIC18.74■□□□□ 0.59
AP4E1Q9UPM8 AC004540.1-203ENST00000421862 907 ntTSL 5 BASIC18.74■□□□□ 0.59
AP4E1Q9UPM8 SLC25A6P5-201ENST00000435663 894 ntBASIC18.74■□□□□ 0.59
AP4E1Q9UPM8 LBX1-AS1-203ENST00000454527 740 ntTSL 5 BASIC18.74■□□□□ 0.59
AP4E1Q9UPM8 AC234772.2-201ENST00000456532 375 ntTSL 3 BASIC18.74■□□□□ 0.59
AP4E1Q9UPM8 MOK-234ENST00000524370 1165 ntTSL 1 (best) BASIC18.74■□□□□ 0.59
AP4E1Q9UPM8 AC127526.4-201ENST00000527970 983 ntTSL 3 BASIC18.74■□□□□ 0.59
AP4E1Q9UPM8 AL049597.2-201ENST00000565575 961 ntBASIC18.74■□□□□ 0.59
AP4E1Q9UPM8 DUX4-205ENST00000570263 768 ntAPPRIS ALT2 TSL 1 (best) BASIC18.74■□□□□ 0.59
AP4E1Q9UPM8 MIR2117HG-201ENST00000588060 506 ntTSL 4 BASIC18.74■□□□□ 0.59
AP4E1Q9UPM8 ADGRA3-202ENST00000334304 4566 ntAPPRIS P1 TSL 1 (best) BASIC18.74■□□□□ 0.59
AP4E1Q9UPM8 CISD2-201ENST00000273986 2327 ntAPPRIS P1 TSL 1 (best) BASIC18.74■□□□□ 0.59
AP4E1Q9UPM8 AVPR1A-201ENST00000299178 5963 ntAPPRIS P1 TSL 1 (best) BASIC18.74■□□□□ 0.59
AP4E1Q9UPM8 ACP5-201ENST00000218758 1630 ntAPPRIS P1 TSL 1 (best) BASIC18.74■□□□□ 0.59
AP4E1Q9UPM8 CD40-201ENST00000372276 1623 ntTSL 1 (best) BASIC18.74■□□□□ 0.59
AP4E1Q9UPM8 HSPA4-205ENST00000617074 2358 ntTSL 5 BASIC18.74■□□□□ 0.59
AP4E1Q9UPM8 CCDC157-201ENST00000338306 3001 ntAPPRIS P3 TSL 5 BASIC18.74■□□□□ 0.59
AP4E1Q9UPM8 DNAAF4-202ENST00000348518 1897 ntAPPRIS P1 TSL 5 BASIC18.73■□□□□ 0.59
AP4E1Q9UPM8 MFGE8-202ENST00000268151 1752 ntTSL 1 (best) BASIC18.73■□□□□ 0.59
AP4E1Q9UPM8 FOLH1-204ENST00000356696 2403 ntTSL 1 (best) BASIC18.73■□□□□ 0.59
AP4E1Q9UPM8 ANKS1A-201ENST00000360359 6347 ntAPPRIS P1 TSL 1 (best) BASIC18.73■□□□□ 0.59
AP4E1Q9UPM8 SEMA6D-205ENST00000389425 2318 ntTSL 1 (best) BASIC18.73■□□□□ 0.59
AP4E1Q9UPM8 NFATC1-206ENST00000542384 2142 ntAPPRIS ALT2 TSL 1 (best) BASIC18.73■□□□□ 0.59
AP4E1Q9UPM8 AC090340.1-201ENST00000620778 4980 ntBASIC18.73■□□□□ 0.59
AP4E1Q9UPM8 TBKBP1-204ENST00000622396 2010 ntTSL 1 (best) BASIC18.73■□□□□ 0.59
AP4E1Q9UPM8 OCIAD1-204ENST00000425583 1915 ntTSL 3 BASIC18.73■□□□□ 0.59
AP4E1Q9UPM8 ACOT7-202ENST00000377842 1813 ntAPPRIS ALT2 TSL 1 (best) BASIC18.73■□□□□ 0.59
AP4E1Q9UPM8 PTCRA-201ENST00000304672 1080 ntAPPRIS P3 TSL 1 (best) BASIC18.73■□□□□ 0.59
AP4E1Q9UPM8 IGHGP-201ENST00000390555 1178 ntBASIC18.73■□□□□ 0.59
AP4E1Q9UPM8 SGO1-208ENST00000437051 1187 ntAPPRIS ALT2 TSL 1 (best) BASIC18.73■□□□□ 0.59
AP4E1Q9UPM8 PTCRA-202ENST00000441198 1005 ntTSL 1 (best) BASIC18.73■□□□□ 0.59
AP4E1Q9UPM8 PTCRA-203ENST00000446507 759 ntTSL 1 (best) BASIC18.73■□□□□ 0.59
AP4E1Q9UPM8 SMIM29-206ENST00000476320 1297 ntAPPRIS P1 TSL 2 BASIC18.73■□□□□ 0.59
AP4E1Q9UPM8 PPOX-214ENST00000535223 664 ntTSL 3 BASIC18.73■□□□□ 0.59
AP4E1Q9UPM8 MRPL52-215ENST00000556840 398 ntTSL 2 BASIC18.73■□□□□ 0.59
AP4E1Q9UPM8 LIMD2-211ENST00000583211 1298 ntTSL 3 BASIC18.73■□□□□ 0.59
AP4E1Q9UPM8 THOP1-201ENST00000307741 4804 ntAPPRIS P1 TSL 1 (best) BASIC18.73■□□□□ 0.59
AP4E1Q9UPM8 NCOA6-207ENST00000616167 3271 ntAPPRIS ALT2 TSL 5 BASIC18.73■□□□□ 0.59
AP4E1Q9UPM8 FDXR-203ENST00000420580 1705 ntTSL 2 BASIC18.73■□□□□ 0.59
AP4E1Q9UPM8 FBXL17-201ENST00000359660 4510 ntTSL 1 (best) BASIC18.73■□□□□ 0.59
AP4E1Q9UPM8 AC127496.1-202ENST00000573602 2091 ntTSL 2 BASIC18.73■□□□□ 0.59
AP4E1Q9UPM8 SLC22A11-202ENST00000377581 1975 ntTSL 5 BASIC18.73■□□□□ 0.59
AP4E1Q9UPM8 LBHD1-210ENST00000532208 1508 ntAPPRIS P2 TSL 5 BASIC18.73■□□□□ 0.59
AP4E1Q9UPM8 PANX1-201ENST00000227638 2769 ntAPPRIS P2 TSL 1 (best) BASIC18.73■□□□□ 0.59
AP4E1Q9UPM8 CCDC92-201ENST00000238156 2787 ntTSL 1 (best) BASIC18.73■□□□□ 0.59
Retrieved 100 of 98,524 protein–RNA pairs in 31.1 ms