Protein–RNA interactions for Protein: Q8TE12

LMX1A, LIM homeobox transcription factor 1-alpha, humanhuman

Predictions only

Length 382 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LMX1AQ8TE12 BABAM1-206ENST00000595632 966 ntAPPRIS ALT2 TSL 5 BASIC17.56■□□□□ 0.4
LMX1AQ8TE12 LIN28B-AS1-205ENST00000637414 879 ntTSL 5 BASIC17.56■□□□□ 0.4
LMX1AQ8TE12 ADCY9-201ENST00000294016 7725 ntAPPRIS P1 TSL 1 (best) BASIC17.56■□□□□ 0.4
LMX1AQ8TE12 RBM15B-201ENST00000563281 6641 ntAPPRIS P1 BASIC17.56■□□□□ 0.4
LMX1AQ8TE12 QKI-203ENST00000361752 9463 ntAPPRIS P1 TSL 1 (best) BASIC17.56■□□□□ 0.4
LMX1AQ8TE12 FBXL19-207ENST00000565690 2570 ntAPPRIS ALT2 TSL 5 BASIC17.56■□□□□ 0.4
LMX1AQ8TE12 ISL2-201ENST00000290759 1881 ntAPPRIS P1 TSL 1 (best) BASIC17.56■□□□□ 0.4
LMX1AQ8TE12 MAPK8IP3-216ENST00000610761 5626 ntAPPRIS ALT1 TSL 1 (best) BASIC17.56■□□□□ 0.4
LMX1AQ8TE12 GAS6-201ENST00000327773 2490 ntAPPRIS P1 TSL 1 (best) BASIC17.56■□□□□ 0.4
LMX1AQ8TE12 PCSK5-201ENST00000376752 5756 ntAPPRIS P3 TSL 1 (best) BASIC17.56■□□□□ 0.4
LMX1AQ8TE12 PRSS36-202ENST00000418068 2446 ntTSL 2 BASIC17.56■□□□□ 0.4
LMX1AQ8TE12 AC063977.6-201ENST00000600074 1763 ntTSL 1 (best) BASIC17.56■□□□□ 0.4
LMX1AQ8TE12 AC009041.2-206ENST00000563863 1728 ntTSL 2 BASIC17.55■□□□□ 0.4
LMX1AQ8TE12 AC011840.1-202ENST00000436477 1351 ntTSL 2 BASIC17.55■□□□□ 0.4
LMX1AQ8TE12 PLAUR-201ENST00000221264 1610 ntAPPRIS ALT2 TSL 1 (best) BASIC17.55■□□□□ 0.4
LMX1AQ8TE12 JMJD6-202ENST00000397625 1603 ntAPPRIS P1 TSL 1 (best) BASIC17.55■□□□□ 0.4
LMX1AQ8TE12 FIP1L1-202ENST00000337488 2198 ntTSL 1 (best) BASIC17.55■□□□□ 0.4
LMX1AQ8TE12 TWF1-201ENST00000395510 3045 ntAPPRIS P1 TSL 1 (best) BASIC17.55■□□□□ 0.4
LMX1AQ8TE12 TMEM42-201ENST00000302392 1026 ntAPPRIS P1 TSL 1 (best) BASIC17.55■□□□□ 0.4
LMX1AQ8TE12 SUV39H2-202ENST00000354919 1233 ntAPPRIS ALT2 TSL 5 BASIC17.55■□□□□ 0.4
LMX1AQ8TE12 ERI1-203ENST00000519292 2107 ntAPPRIS P1 TSL 2 BASIC17.55■□□□□ 0.4
LMX1AQ8TE12 AP006621.3-203ENST00000525941 610 ntTSL 2 BASIC17.55■□□□□ 0.4
LMX1AQ8TE12 HEXA-210ENST00000567213 1000 ntTSL 3 BASIC17.55■□□□□ 0.4
LMX1AQ8TE12 LINC01956-202ENST00000584273 612 ntTSL 3 BASIC17.55■□□□□ 0.4
LMX1AQ8TE12 FGF14-IT1-202ENST00000607251 2123 ntTSL 2 BASIC17.55■□□□□ 0.4
LMX1AQ8TE12 AC005632.4-201ENST00000613759 431 ntTSL 3 BASIC17.55■□□□□ 0.4
LMX1AQ8TE12 GPX4-212ENST00000616066 924 ntAPPRIS ALT1 TSL 5 BASIC17.55■□□□□ 0.4
LMX1AQ8TE12 MCU-202ENST00000373053 2949 ntAPPRIS P1 TSL 1 (best) BASIC17.55■□□□□ 0.4
LMX1AQ8TE12 ATP1B1-202ENST00000367816 2608 ntAPPRIS P1 TSL 5 BASIC17.55■□□□□ 0.4
LMX1AQ8TE12 FPGS-203ENST00000373247 2279 ntAPPRIS P1 TSL 1 (best) BASIC17.55■□□□□ 0.4
LMX1AQ8TE12 SMAD7-201ENST00000262158 3087 ntAPPRIS P3 TSL 1 (best) BASIC17.55■□□□□ 0.4
LMX1AQ8TE12 KANK4-204ENST00000371153 4665 ntAPPRIS P1 TSL 1 (best) BASIC17.55■□□□□ 0.4
LMX1AQ8TE12 RPL32-202ENST00000396953 1734 ntAPPRIS P1 TSL 1 (best) BASIC17.55■□□□□ 0.4
LMX1AQ8TE12 PDXK-219ENST00000621478 1967 ntTSL 1 (best) BASIC17.55■□□□□ 0.4
LMX1AQ8TE12 KXD1-201ENST00000222307 1426 ntAPPRIS P1 TSL 1 (best) BASIC17.55■□□□□ 0.4
LMX1AQ8TE12 SIKE1-201ENST00000060969 2190 ntAPPRIS P3 TSL 1 (best) BASIC17.55■□□□□ 0.4
LMX1AQ8TE12 PCCA-201ENST00000376279 2418 ntTSL 2 BASIC17.55■□□□□ 0.4
LMX1AQ8TE12 KBTBD11-201ENST00000320248 6710 ntAPPRIS P1 TSL 1 (best) BASIC17.54■□□□□ 0.4
LMX1AQ8TE12 AC020763.4-201ENST00000623414 4170 ntBASIC17.54■□□□□ 0.4
LMX1AQ8TE12 ACP5-201ENST00000218758 1630 ntAPPRIS P1 TSL 1 (best) BASIC17.54■□□□□ 0.4
LMX1AQ8TE12 AMZ2-203ENST00000392720 1378 ntAPPRIS P1 TSL 1 (best) BASIC17.54■□□□□ 0.4
LMX1AQ8TE12 POLR2M-206ENST00000494490 1648 ntTSL 5 BASIC17.54■□□□□ 0.4
LMX1AQ8TE12 MBD1-208ENST00000398493 1845 ntTSL 5 BASIC17.54■□□□□ 0.4
LMX1AQ8TE12 RASSF1-210ENST00000616212 1842 ntTSL 2 BASIC17.54■□□□□ 0.4
LMX1AQ8TE12 SOX21-201ENST00000376945 2778 ntAPPRIS P1 BASIC17.54■□□□□ 0.4
LMX1AQ8TE12 POLE2-202ENST00000539565 1792 ntTSL 1 (best) BASIC17.54■□□□□ 0.4
LMX1AQ8TE12 AL031598.1-201ENST00000561511 1773 ntBASIC17.54■□□□□ 0.4
LMX1AQ8TE12 TLE3-214ENST00000558939 6004 ntAPPRIS P4 TSL 1 (best) BASIC17.54■□□□□ 0.4
LMX1AQ8TE12 SYS1-202ENST00000372727 813 ntAPPRIS P1 TSL 3 BASIC17.54■□□□□ 0.4
LMX1AQ8TE12 ABCD1P5-201ENST00000445663 754 ntBASIC17.54■□□□□ 0.4
LMX1AQ8TE12 RBSN-204ENST00000449050 903 ntTSL 2 BASIC17.54■□□□□ 0.4
LMX1AQ8TE12 LINC01615-202ENST00000449466 603 ntTSL 3 BASIC17.54■□□□□ 0.4
LMX1AQ8TE12 AC018712.1-201ENST00000455767 687 ntBASIC17.54■□□□□ 0.4
LMX1AQ8TE12 C1orf109-203ENST00000464085 919 ntAPPRIS P1 TSL 2 BASIC17.54■□□□□ 0.4
LMX1AQ8TE12 YPEL3-209ENST00000566595 796 ntAPPRIS P1 TSL 2 BASIC17.54■□□□□ 0.4
LMX1AQ8TE12 TMEM109-201ENST00000227525 2413 ntAPPRIS P1 TSL 1 (best) BASIC17.54■□□□□ 0.4
LMX1AQ8TE12 USP39-201ENST00000323701 2177 ntAPPRIS P1 TSL 1 (best) BASIC17.54■□□□□ 0.4
LMX1AQ8TE12 TMEM8B-204ENST00000439587 2150 ntTSL 1 (best) BASIC17.54■□□□□ 0.4
LMX1AQ8TE12 AC018755.2-202ENST00000429354 1926 ntAPPRIS P1 TSL 1 (best) BASIC17.54■□□□□ 0.4
LMX1AQ8TE12 SMARCD3-202ENST00000356800 1669 ntTSL 1 (best) BASIC17.54■□□□□ 0.4
LMX1AQ8TE12 CTSA-201ENST00000191018 1898 ntTSL 1 (best) BASIC17.54■□□□□ 0.4
LMX1AQ8TE12 AP005117.1-201ENST00000584346 1413 ntBASIC17.54■□□□□ 0.4
LMX1AQ8TE12 EIF4G3-214ENST00000634879 5325 ntTSL 5 BASIC17.54■□□□□ 0.4
LMX1AQ8TE12 PTGES2-201ENST00000277462 1614 ntTSL 2 BASIC17.54■□□□□ 0.4
LMX1AQ8TE12 PORCN-205ENST00000367574 1368 ntAPPRIS ALT1 TSL 1 (best) BASIC17.53■□□□□ 0.4
LMX1AQ8TE12 PORCN-214ENST00000537758 1371 ntAPPRIS ALT1 TSL 1 (best) BASIC17.53■□□□□ 0.4
LMX1AQ8TE12 TIGD6-202ENST00000515406 2429 ntAPPRIS P1 TSL 1 (best) BASIC17.53■□□□□ 0.4
LMX1AQ8TE12 PRODH-215ENST00000610940 2405 ntAPPRIS P3 TSL 1 (best) BASIC17.53■□□□□ 0.4
LMX1AQ8TE12 AC027312.1-201ENST00000523591 1571 ntTSL 5 BASIC17.53■□□□□ 0.4
LMX1AQ8TE12 IL1R1-205ENST00000410023 5143 ntAPPRIS P1 TSL 1 (best) BASIC17.53■□□□□ 0.4
LMX1AQ8TE12 HSD3B7-202ENST00000297679 2172 ntAPPRIS P1 TSL 1 (best) BASIC17.53■□□□□ 0.4
LMX1AQ8TE12 PYCR2-208ENST00000612039 1549 ntTSL 3 BASIC17.53■□□□□ 0.4
LMX1AQ8TE12 PYCR2-209ENST00000612651 1538 ntTSL 5 BASIC17.53■□□□□ 0.4
LMX1AQ8TE12 PLEKHG5-207ENST00000400913 4698 ntAPPRIS P3 TSL 5 BASIC17.53■□□□□ 0.4
LMX1AQ8TE12 DACT2-204ENST00000610183 2088 ntAPPRIS ALT2 TSL 1 (best) BASIC17.53■□□□□ 0.4
LMX1AQ8TE12 ATP1B1-201ENST00000367815 1883 ntAPPRIS P1 TSL 1 (best) BASIC17.53■□□□□ 0.4
LMX1AQ8TE12 ACBD6-201ENST00000367595 1670 ntAPPRIS P1 TSL 1 (best) BASIC17.53■□□□□ 0.4
LMX1AQ8TE12 AC004832.3-202ENST00000439838 1470 ntAPPRIS P1 TSL 2 BASIC17.53■□□□□ 0.4
LMX1AQ8TE12 ODF3B-202ENST00000401779 869 ntTSL 1 (best) BASIC17.53■□□□□ 0.4
LMX1AQ8TE12 ODF3B-203ENST00000403326 643 ntTSL 3 BASIC17.53■□□□□ 0.4
LMX1AQ8TE12 MMP24-AS1-201ENST00000424358 867 ntAPPRIS P1 TSL 2 BASIC17.53■□□□□ 0.4
LMX1AQ8TE12 ODF3B-205ENST00000428989 762 ntAPPRIS P1 TSL 1 (best) BASIC17.53■□□□□ 0.4
LMX1AQ8TE12 MMP24-AS1-209ENST00000456790 712 ntAPPRIS P1 TSL 2 BASIC17.53■□□□□ 0.4
LMX1AQ8TE12 SMIM29-206ENST00000476320 1297 ntAPPRIS P1 TSL 2 BASIC17.53■□□□□ 0.4
LMX1AQ8TE12 SLC25A1P1-201ENST00000528351 927 ntBASIC17.53■□□□□ 0.4
LMX1AQ8TE12 MTUS2-205ENST00000542829 1165 ntTSL 1 (best) BASIC17.53■□□□□ 0.4
LMX1AQ8TE12 AC021739.2-201ENST00000558375 964 ntTSL 5 BASIC17.53■□□□□ 0.4
LMX1AQ8TE12 AL049840.3-201ENST00000602669 611 ntBASIC17.53■□□□□ 0.4
LMX1AQ8TE12 AXIN2-208ENST00000611991 1019 ntTSL 5 BASIC17.53■□□□□ 0.4
LMX1AQ8TE12 AC023511.2-201ENST00000618803 211 ntBASIC17.53■□□□□ 0.4
LMX1AQ8TE12 ASAH1-255ENST00000637638 699 ntTSL 2 BASIC17.53■□□□□ 0.4
LMX1AQ8TE12 BAALC-203ENST00000309982 2831 ntAPPRIS P1 TSL 1 (best) BASIC17.53■□□□□ 0.4
LMX1AQ8TE12 STX17-212ENST00000534052 2424 ntAPPRIS P1 TSL 1 (best) BASIC17.53■□□□□ 0.4
LMX1AQ8TE12 LRRC43-201ENST00000339777 2028 ntAPPRIS P2 TSL 5 BASIC17.53■□□□□ 0.4
LMX1AQ8TE12 TP53I3-202ENST00000335934 1635 ntAPPRIS P1 TSL 1 (best) BASIC17.53■□□□□ 0.4
LMX1AQ8TE12 AC135782.1-201ENST00000537498 2154 ntTSL 2 BASIC17.53■□□□□ 0.4
LMX1AQ8TE12 HMCES-201ENST00000383463 2515 ntAPPRIS P1 TSL 1 (best) BASIC17.53■□□□□ 0.4
LMX1AQ8TE12 COA5-201ENST00000328709 1754 ntAPPRIS P1 TSL 1 (best) BASIC17.53■□□□□ 0.4
LMX1AQ8TE12 SDCBP2-204ENST00000381812 1550 ntAPPRIS P1 TSL 5 BASIC17.53■□□□□ 0.4
LMX1AQ8TE12 INO80E-207ENST00000563197 2103 ntAPPRIS P1 TSL 1 (best) BASIC17.53■□□□□ 0.4
Retrieved 100 of 98,524 protein–RNA pairs in 49 ms