Protein–RNA interactions for Protein: P35499

SCN4A, Sodium channel protein type 4 subunit alpha, humanhuman

Predictions only

Length 1,836 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SCN4AP35499 AC123777.1-201ENST00000534827 1247 ntTSL 3 BASIC21.2■□□□□ 0.98
SCN4AP35499 AC023355.1-201ENST00000560323 752 ntTSL 3 BASIC21.2■□□□□ 0.98
SCN4AP35499 GID4-202ENST00000376345 1391 ntTSL 3 BASIC21.2■□□□□ 0.98
SCN4AP35499 STYXL1-208ENST00000451157 1570 ntTSL 1 (best) BASIC21.2■□□□□ 0.98
SCN4AP35499 AL079301.1-201ENST00000424580 1633 ntTSL 2 BASIC21.2■□□□□ 0.98
SCN4AP35499 APBB3-203ENST00000357560 2218 ntAPPRIS P3 TSL 5 BASIC21.2■□□□□ 0.98
SCN4AP35499 AP000662.2-202ENST00000530595 2790 ntTSL 2 BASIC21.2■□□□□ 0.98
SCN4AP35499 MTFR1L-202ENST00000374301 2099 ntAPPRIS P1 TSL 1 (best) BASIC21.2■□□□□ 0.98
SCN4AP35499 RAB1B-201ENST00000311481 2007 ntAPPRIS P1 TSL 1 (best) BASIC21.2■□□□□ 0.98
SCN4AP35499 WWOX-203ENST00000406884 1701 ntTSL 1 (best) BASIC21.2■□□□□ 0.98
SCN4AP35499 DXO-203ENST00000375356 1533 ntAPPRIS P1 TSL 1 (best) BASIC21.2■□□□□ 0.98
SCN4AP35499 LYPLA2-204ENST00000374505 907 ntTSL 3 BASIC21.2■□□□□ 0.98
SCN4AP35499 AL627223.1-201ENST00000416693 442 ntBASIC21.2■□□□□ 0.98
SCN4AP35499 AC002472.2-201ENST00000442739 958 ntBASIC21.2■□□□□ 0.98
SCN4AP35499 SIGLEC30P-201ENST00000455569 941 ntBASIC21.2■□□□□ 0.98
SCN4AP35499 TVP23B-206ENST00000574226 1080 ntAPPRIS ALT1 TSL 1 (best) BASIC21.2■□□□□ 0.98
SCN4AP35499 FSTL3-202ENST00000588773 746 ntTSL 2 BASIC21.2■□□□□ 0.98
SCN4AP35499 AC023141.13-201ENST00000604991 943 ntBASIC21.2■□□□□ 0.98
SCN4AP35499 SLC9A3-AS1-204ENST00000606288 791 ntTSL 2 BASIC21.2■□□□□ 0.98
SCN4AP35499 GGTLC5P-201ENST00000617623 998 ntBASIC21.2■□□□□ 0.98
SCN4AP35499 BLACE-201ENST00000378120 2456 ntAPPRIS P1 TSL 1 (best) BASIC21.19■□□□□ 0.98
SCN4AP35499 ZNF582-207ENST00000619584 2297 ntAPPRIS P1 TSL 1 (best) BASIC21.19■□□□□ 0.98
SCN4AP35499 UNG-202ENST00000336865 2130 ntAPPRIS ALT2 TSL 1 (best) BASIC21.19■□□□□ 0.98
SCN4AP35499 ERI1-203ENST00000519292 2107 ntAPPRIS P1 TSL 2 BASIC21.19■□□□□ 0.98
SCN4AP35499 AC011944.1-201ENST00000316148 1900 ntTSL 2 BASIC21.19■□□□□ 0.98
SCN4AP35499 CACNB3-202ENST00000536187 1872 ntTSL 2 BASIC21.19■□□□□ 0.98
SCN4AP35499 NPM1-201ENST00000296930 1758 ntAPPRIS P1 TSL 1 (best) BASIC21.19■□□□□ 0.98
SCN4AP35499 PDE9A-203ENST00000335440 1728 ntTSL 1 (best) BASIC21.19■□□□□ 0.98
SCN4AP35499 ZNF580-202ENST00000543039 1707 ntAPPRIS P1 BASIC21.19■□□□□ 0.98
SCN4AP35499 PYCR1-217ENST00000629768 1740 ntTSL 5 BASIC21.19■□□□□ 0.98
SCN4AP35499 SPATS2L-204ENST00000409140 2463 ntAPPRIS P1 TSL 2 BASIC21.19■□□□□ 0.98
SCN4AP35499 LGALS7B-201ENST00000314980 483 ntAPPRIS P1 TSL 1 (best) BASIC21.19■□□□□ 0.98
SCN4AP35499 AC074386.1-202ENST00000463561 864 ntBASIC21.19■□□□□ 0.98
SCN4AP35499 POLD4-211ENST00000539074 714 ntTSL 3 BASIC21.19■□□□□ 0.98
SCN4AP35499 DUX4L17-201ENST00000557360 1267 ntBASIC21.19■□□□□ 0.98
SCN4AP35499 AC010503.2-201ENST00000599292 296 ntTSL 3 BASIC21.19■□□□□ 0.98
SCN4AP35499 FNDC11-204ENST00000615526 2954 ntAPPRIS P1 BASIC21.19■□□□□ 0.98
SCN4AP35499 MED16-214ENST00000617672 554 ntTSL 5 BASIC21.19■□□□□ 0.98
SCN4AP35499 NOTCH2NL-204ENST00000579793 1954 ntAPPRIS ALT2 TSL 2 BASIC21.19■□□□□ 0.98
SCN4AP35499 DTX2-212ENST00000446820 1770 ntAPPRIS ALT2 TSL 1 (best) BASIC21.19■□□□□ 0.98
SCN4AP35499 TRH-202ENST00000507066 1580 ntAPPRIS ALT1 TSL 5 BASIC21.19■□□□□ 0.98
SCN4AP35499 HOXC4-201ENST00000303406 1524 ntAPPRIS P1 TSL 1 (best) BASIC21.19■□□□□ 0.98
SCN4AP35499 HSD17B6-203ENST00000554150 1547 ntAPPRIS P1 TSL 5 BASIC21.19■□□□□ 0.98
SCN4AP35499 INTS11-208ENST00000435064 2148 ntAPPRIS P1 TSL 1 (best) BASIC21.19■□□□□ 0.98
SCN4AP35499 C15orf56-202ENST00000623360 2129 ntTSL 2 BASIC21.19■□□□□ 0.98
SCN4AP35499 PCGF2-206ENST00000618941 1499 ntTSL 5 BASIC21.18■□□□□ 0.98
SCN4AP35499 ARHGEF4-202ENST00000355771 1872 ntAPPRIS ALT2 TSL 1 (best) BASIC21.18■□□□□ 0.98
SCN4AP35499 OSTC-201ENST00000361564 1077 ntAPPRIS P1 TSL 1 (best) BASIC21.18■□□□□ 0.98
SCN4AP35499 HDAC8-202ENST00000373556 704 ntTSL 2 BASIC21.18■□□□□ 0.98
SCN4AP35499 BAD-202ENST00000394531 631 ntTSL 3 BASIC21.18■□□□□ 0.98
SCN4AP35499 HLA-DRB6-201ENST00000411500 1235 ntBASIC21.18■□□□□ 0.98
SCN4AP35499 FAM72B-205ENST00000471903 676 ntTSL 5 BASIC21.18■□□□□ 0.98
SCN4AP35499 LINC00595-207ENST00000476909 792 ntTSL 2 BASIC21.18■□□□□ 0.98
SCN4AP35499 DUT-210ENST00000559935 569 ntTSL 3 BASIC21.18■□□□□ 0.98
SCN4AP35499 AC012645.3-201ENST00000568506 470 ntTSL 3 BASIC21.18■□□□□ 0.98
SCN4AP35499 AC002398.2-201ENST00000587767 660 ntTSL 5 BASIC21.18■□□□□ 0.98
SCN4AP35499 GPR3-201ENST00000374024 2115 ntAPPRIS P1 TSL 1 (best) BASIC21.18■□□□□ 0.98
SCN4AP35499 GMPPA-202ENST00000341142 1524 ntAPPRIS P1 TSL 5 BASIC21.18■□□□□ 0.98
SCN4AP35499 PNCK-203ENST00000370145 1455 ntTSL 2 BASIC21.18■□□□□ 0.98
SCN4AP35499 AC004832.3-202ENST00000439838 1470 ntAPPRIS P1 TSL 2 BASIC21.18■□□□□ 0.98
SCN4AP35499 TFDP2-202ENST00000467072 1853 ntAPPRIS P3 TSL 1 (best) BASIC21.18■□□□□ 0.98
SCN4AP35499 TPGS2-219ENST00000593035 1727 ntAPPRIS ALT2 TSL 2 BASIC21.18■□□□□ 0.98
SCN4AP35499 CYP2D6-203ENST00000360608 1684 ntAPPRIS P1 TSL 1 (best) BASIC21.18■□□□□ 0.98
SCN4AP35499 MIR661-201ENST00000384842 89 ntBASIC21.18■□□□□ 0.98
SCN4AP35499 AP002414.1-201ENST00000391405 1147 ntBASIC21.18■□□□□ 0.98
SCN4AP35499 CCDC159-201ENST00000458408 1062 ntAPPRIS P1 TSL 5 BASIC21.18■□□□□ 0.98
SCN4AP35499 AC024230.1-201ENST00000511431 889 ntTSL 3 BASIC21.18■□□□□ 0.98
SCN4AP35499 RNA5SP421-201ENST00000516864 134 ntBASIC21.18■□□□□ 0.98
SCN4AP35499 IGHV3OR16-6-201ENST00000568775 360 ntBASIC21.18■□□□□ 0.98
SCN4AP35499 AL732314.4-201ENST00000627627 515 ntTSL 4 BASIC21.18■□□□□ 0.98
SCN4AP35499 PGLYRP1-201ENST00000008938 720 ntAPPRIS P1 TSL 1 (best) BASIC21.18■□□□□ 0.98
SCN4AP35499 CPT2-203ENST00000635862 2319 ntTSL 5 BASIC21.18■□□□□ 0.98
SCN4AP35499 MRM2-203ENST00000440306 1570 ntAPPRIS P1 TSL 5 BASIC21.17■□□□□ 0.98
SCN4AP35499 DPM2-201ENST00000314392 1542 ntAPPRIS P1 TSL 1 (best) BASIC21.17■□□□□ 0.98
SCN4AP35499 KCNC2-204ENST00000540018 2168 ntAPPRIS ALT2 TSL 2 BASIC21.17■□□□□ 0.98
SCN4AP35499 INHA-201ENST00000243786 1468 ntAPPRIS P1 TSL 1 (best) BASIC21.17■□□□□ 0.98
SCN4AP35499 AC006001.3-204ENST00000638711 2103 ntTSL 5 BASIC21.17■□□□□ 0.98
SCN4AP35499 AC025580.3-201ENST00000617932 1424 ntBASIC21.17■□□□□ 0.98
SCN4AP35499 YTHDF3-213ENST00000621820 2363 ntTSL 2 BASIC21.17■□□□□ 0.98
SCN4AP35499 HOXC10-201ENST00000303460 1936 ntAPPRIS P1 TSL 1 (best) BASIC21.17■□□□□ 0.98
SCN4AP35499 SOX8-201ENST00000293894 3049 ntAPPRIS P1 TSL 1 (best) BASIC21.17■□□□□ 0.98
SCN4AP35499 NDUFV1-201ENST00000322776 1596 ntAPPRIS P3 TSL 1 (best) BASIC21.17■□□□□ 0.98
SCN4AP35499 LTC4S-201ENST00000292596 666 ntAPPRIS P1 TSL 1 (best) BASIC21.17■□□□□ 0.98
SCN4AP35499 MEIS3P1-201ENST00000495167 958 ntBASIC21.17■□□□□ 0.98
SCN4AP35499 TIMM13-202ENST00000591871 631 ntTSL 5 BASIC21.17■□□□□ 0.98
SCN4AP35499 BOK-201ENST00000318407 2657 ntAPPRIS P1 TSL 1 (best) BASIC21.17■□□□□ 0.98
SCN4AP35499 CLIP3-206ENST00000593074 2080 ntAPPRIS P1 TSL 2 BASIC21.17■□□□□ 0.98
SCN4AP35499 C19orf35-201ENST00000342063 2574 ntAPPRIS P1 TSL 2 BASIC21.17■□□□□ 0.98
SCN4AP35499 SLC22A1-203ENST00000457470 1452 ntTSL 5 BASIC21.17■□□□□ 0.98
SCN4AP35499 GLYCTK-202ENST00000436784 1982 ntAPPRIS P1 TSL 1 (best) BASIC21.17■□□□□ 0.98
SCN4AP35499 ZNF276-208ENST00000568064 2203 ntTSL 5 BASIC21.17■□□□□ 0.98
SCN4AP35499 CYBA-210ENST00000569359 1415 ntTSL 1 (best) BASIC21.17■□□□□ 0.98
SCN4AP35499 CEACAM16-202ENST00000587331 1692 ntAPPRIS P1 TSL 1 (best) BASIC21.17■□□□□ 0.98
SCN4AP35499 UQCC3-201ENST00000377953 1947 ntAPPRIS P1 TSL 1 (best) BASIC21.17■□□□□ 0.98
SCN4AP35499 CDCP2-202ENST00000530059 1623 ntAPPRIS ALT2 TSL 5 BASIC21.16■□□□□ 0.98
SCN4AP35499 KCNMA1-252ENST00000639120 2308 ntTSL 5 BASIC21.16■□□□□ 0.98
SCN4AP35499 POLD2-201ENST00000223361 1597 ntTSL 5 BASIC21.16■□□□□ 0.98
SCN4AP35499 AC006974.1-201ENST00000637928 1501 ntTSL 5 BASIC21.16■□□□□ 0.98
SCN4AP35499 SPINK2-203ENST00000506738 763 ntAPPRIS ALT2 TSL 2 BASIC21.16■□□□□ 0.98
SCN4AP35499 NAA60-208ENST00000570819 833 ntTSL 2 BASIC21.16■□□□□ 0.98
Retrieved 100 of 98,524 protein–RNA pairs in 45.1 ms