Protein–RNA interactions for Protein: P25940

COL5A3, Collagen alpha-3(V) chain, humanhuman

Predicted RBP Predictions only

Length 1,745 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL5A3P25940 INPP5J-204ENST00000402238 1564 ntTSL 2 BASIC22.62■■□□□ 1.21
COL5A3P25940 MEF2B-201ENST00000409224 1683 ntTSL 2 BASIC22.62■■□□□ 1.21
COL5A3P25940 AC103564.2-201ENST00000432853 1299 ntBASIC22.62■■□□□ 1.21
COL5A3P25940 ADH5P3-201ENST00000433842 1137 ntBASIC22.62■■□□□ 1.21
COL5A3P25940 AC078883.2-201ENST00000441212 558 ntTSL 3 BASIC22.62■■□□□ 1.21
COL5A3P25940 HIST4H4-204ENST00000539745 577 ntAPPRIS P1 BASIC22.62■■□□□ 1.21
COL5A3P25940 TMEM220-203ENST00000578345 559 ntAPPRIS ALT2 TSL 2 BASIC22.62■■□□□ 1.21
COL5A3P25940 MIR4469-201ENST00000583919 79 ntBASIC22.62■■□□□ 1.21
COL5A3P25940 TMEM175-222ENST00000622959 1967 ntTSL 1 (best) BASIC22.62■■□□□ 1.21
COL5A3P25940 C20orf181-201ENST00000623918 480 ntBASIC22.62■■□□□ 1.21
COL5A3P25940 C10orf111-201ENST00000624760 1714 ntTSL 1 (best) BASIC22.62■■□□□ 1.21
COL5A3P25940 INAFM2-202ENST00000638170 3052 ntAPPRIS P1 BASIC22.61■■□□□ 1.21
COL5A3P25940 HCK-202ENST00000375852 2082 ntAPPRIS ALT2 TSL 1 (best) BASIC22.61■■□□□ 1.21
COL5A3P25940 ZGPAT-202ENST00000355969 1871 ntAPPRIS P1 TSL 1 (best) BASIC22.61■■□□□ 1.21
COL5A3P25940 SIRPAP1-201ENST00000448467 1770 ntBASIC22.61■■□□□ 1.21
COL5A3P25940 GOLGA6L10-207ENST00000610657 1705 ntAPPRIS P2 TSL 2 BASIC22.61■■□□□ 1.21
COL5A3P25940 GNB1-201ENST00000378609 3132 ntAPPRIS P1 TSL 1 (best) BASIC22.61■■□□□ 1.21
COL5A3P25940 PITPNB-205ENST00000455418 2963 ntAPPRIS ALT1 TSL 5 BASIC22.61■■□□□ 1.21
COL5A3P25940 EPDR1-201ENST00000199448 2599 ntAPPRIS P3 TSL 1 (best) BASIC22.61■■□□□ 1.21
COL5A3P25940 SGO2-202ENST00000409203 1041 ntAPPRIS ALT2 TSL 1 (best) BASIC22.61■■□□□ 1.21
COL5A3P25940 SLC4A1APP2-201ENST00000424054 1259 ntBASIC22.61■■□□□ 1.21
COL5A3P25940 FTCD-AS1-201ENST00000446649 500 ntTSL 2 BASIC22.61■■□□□ 1.21
COL5A3P25940 BX890604.1-208ENST00000490920 726 ntTSL 2 BASIC22.61■■□□□ 1.21
COL5A3P25940 RPS15P9-201ENST00000494093 319 ntBASIC22.61■■□□□ 1.21
COL5A3P25940 AC025183.1-201ENST00000506335 425 ntTSL 4 BASIC22.61■■□□□ 1.21
COL5A3P25940 RPL28-205ENST00000558131 444 ntTSL 5 BASIC22.61■■□□□ 1.21
COL5A3P25940 AC012645.3-201ENST00000568506 470 ntTSL 3 BASIC22.61■■□□□ 1.21
COL5A3P25940 ORC5-208ENST00000626700 344 ntTSL 3 BASIC22.61■■□□□ 1.21
COL5A3P25940 CLN3-255ENST00000637100 1284 ntTSL 5 BASIC22.61■■□□□ 1.21
COL5A3P25940 FXYD6-211ENST00000539526 2132 ntAPPRIS P2 TSL 1 (best) BASIC22.61■■□□□ 1.21
COL5A3P25940 PEX14-201ENST00000356607 1985 ntAPPRIS P1 TSL 1 (best) BASIC22.61■■□□□ 1.21
COL5A3P25940 TMEM250-205ENST00000561457 2804 ntAPPRIS P1 TSL 2 BASIC22.61■■□□□ 1.21
COL5A3P25940 PFN4-201ENST00000313213 974 ntAPPRIS P1 TSL 1 (best) BASIC22.6■■□□□ 1.21
COL5A3P25940 RPS17-201ENST00000330244 592 ntAPPRIS P1 TSL 1 (best) BASIC22.6■■□□□ 1.21
COL5A3P25940 DDIT4-AS1-201ENST00000491934 847 ntTSL 5 BASIC22.6■■□□□ 1.21
COL5A3P25940 AP000344.2-201ENST00000512987 629 ntBASIC22.6■■□□□ 1.21
COL5A3P25940 POLD4-207ENST00000531239 584 ntTSL 2 BASIC22.6■■□□□ 1.21
COL5A3P25940 LAT-209ENST00000564277 921 ntAPPRIS ALT2 TSL 5 BASIC22.6■■□□□ 1.21
COL5A3P25940 CYB561-217ENST00000582997 877 ntTSL 5 BASIC22.6■■□□□ 1.21
COL5A3P25940 AC005306.1-201ENST00000587498 661 ntTSL 3 BASIC22.6■■□□□ 1.21
COL5A3P25940 LINC01356-201ENST00000401018 1819 ntTSL 2 BASIC22.6■■□□□ 1.21
COL5A3P25940 FBXO25-203ENST00000352684 2360 ntTSL 5 BASIC22.6■■□□□ 1.21
COL5A3P25940 NFATC4-220ENST00000555393 2235 ntTSL 1 (best) BASIC22.6■■□□□ 1.21
COL5A3P25940 INO80E-207ENST00000563197 2103 ntAPPRIS P1 TSL 1 (best) BASIC22.6■■□□□ 1.21
COL5A3P25940 ACP6-201ENST00000392988 1555 ntTSL 1 (best) BASIC22.6■■□□□ 1.21
COL5A3P25940 MLX-201ENST00000246912 2586 ntAPPRIS P3 TSL 1 (best) BASIC22.6■■□□□ 1.21
COL5A3P25940 HNRNPLL-203ENST00000378915 2523 ntTSL 5 BASIC22.6■■□□□ 1.21
COL5A3P25940 CLN3-203ENST00000357806 1469 ntTSL 1 (best) BASIC22.6■■□□□ 1.21
COL5A3P25940 COQ10A-202ENST00000433805 1410 ntAPPRIS ALT2 TSL 1 (best) BASIC22.6■■□□□ 1.21
COL5A3P25940 FAM217A-201ENST00000274673 2265 ntAPPRIS P1 TSL 1 (best) BASIC22.6■■□□□ 1.21
COL5A3P25940 GUCA2A-201ENST00000357001 569 ntAPPRIS P1 TSL 1 (best) BASIC22.6■■□□□ 1.21
COL5A3P25940 MFSD13A-202ENST00000369931 823 ntTSL 1 (best) BASIC22.6■■□□□ 1.21
COL5A3P25940 BLOC1S2-202ENST00000370372 1249 ntAPPRIS P1 TSL 1 (best) BASIC22.6■■□□□ 1.21
COL5A3P25940 C9orf116-202ENST00000371789 1278 ntTSL 1 (best) BASIC22.6■■□□□ 1.21
COL5A3P25940 HMGN4-201ENST00000377575 1225 ntAPPRIS P1 TSL 1 (best) BASIC22.6■■□□□ 1.21
COL5A3P25940 AL020989.1-201ENST00000422979 469 ntBASIC22.6■■□□□ 1.21
COL5A3P25940 NFIB-212ENST00000622520 1274 ntTSL 5 BASIC22.6■■□□□ 1.21
COL5A3P25940 U2AF2-202ENST00000450554 3022 ntAPPRIS ALT1 TSL 1 (best) BASIC22.59■■□□□ 1.21
COL5A3P25940 ENTPD8-202ENST00000371506 2222 ntAPPRIS P1 TSL 5 BASIC22.59■■□□□ 1.21
COL5A3P25940 AC002310.2-202ENST00000492040 1488 ntTSL 1 (best) BASIC22.59■■□□□ 1.21
COL5A3P25940 SIGIRR-203ENST00000431843 1720 ntAPPRIS P1 TSL 1 (best) BASIC22.59■■□□□ 1.21
COL5A3P25940 HFE2-204ENST00000475797 1381 ntTSL 2 BASIC22.59■■□□□ 1.21
COL5A3P25940 FBLN7-202ENST00000331203 2301 ntAPPRIS P1 TSL 1 (best) BASIC22.59■■□□□ 1.21
COL5A3P25940 NAB2-202ENST00000342556 2318 ntTSL 5 BASIC22.59■■□□□ 1.21
COL5A3P25940 METTL21A-202ENST00000406927 1103 ntAPPRIS P1 TSL 1 (best) BASIC22.59■■□□□ 1.21
COL5A3P25940 CNN2P11-201ENST00000429351 262 ntBASIC22.59■■□□□ 1.21
COL5A3P25940 XXYLT1-204ENST00000429994 865 ntTSL 3 BASIC22.59■■□□□ 1.21
COL5A3P25940 C9orf147-204ENST00000463223 863 ntTSL 3 BASIC22.59■■□□□ 1.21
COL5A3P25940 S100A2-206ENST00000497140 697 ntTSL 2 BASIC22.59■■□□□ 1.21
COL5A3P25940 CYB561D1-208ENST00000528785 1271 ntAPPRIS ALT1 TSL 5 BASIC22.59■■□□□ 1.21
COL5A3P25940 CYB561D1-209ENST00000533024 913 ntTSL 2 BASIC22.59■■□□□ 1.21
COL5A3P25940 AL109827.1-203ENST00000541176 872 ntAPPRIS P5 TSL 2 BASIC22.59■■□□□ 1.21
COL5A3P25940 AL157871.1-202ENST00000556458 478 ntTSL 5 BASIC22.59■■□□□ 1.21
COL5A3P25940 ZFPM1-203ENST00000562437 502 ntTSL 2 BASIC22.59■■□□□ 1.21
COL5A3P25940 AL590999.1-203ENST00000606829 542 ntTSL 4 BASIC22.59■■□□□ 1.21
COL5A3P25940 BCS1L-202ENST00000392109 1583 ntAPPRIS P1 TSL 1 (best) BASIC22.59■■□□□ 1.21
COL5A3P25940 BCS1L-204ENST00000392111 1584 ntAPPRIS P1 TSL 1 (best) BASIC22.59■■□□□ 1.21
COL5A3P25940 ISL2-201ENST00000290759 1881 ntAPPRIS P1 TSL 1 (best) BASIC22.59■■□□□ 1.21
COL5A3P25940 AQP11-201ENST00000313578 2152 ntAPPRIS P1 TSL 1 (best) BASIC22.59■■□□□ 1.21
COL5A3P25940 LBHD1-210ENST00000532208 1508 ntAPPRIS P2 TSL 5 BASIC22.59■■□□□ 1.21
COL5A3P25940 ST3GAL4-209ENST00000526727 1967 ntAPPRIS ALT1 TSL 1 (best) BASIC22.58■■□□□ 1.21
COL5A3P25940 AC125494.1-203ENST00000396799 1622 ntTSL 1 (best) BASIC22.58■■□□□ 1.21
COL5A3P25940 MFSD1-219ENST00000622669 2361 ntTSL 1 (best) BASIC22.58■■□□□ 1.21
COL5A3P25940 TFAP2A-AS1-201ENST00000420777 1575 ntTSL 5 BASIC22.58■■□□□ 1.21
COL5A3P25940 DNAJC4-203ENST00000355040 759 ntTSL 1 (best) BASIC22.58■■□□□ 1.21
COL5A3P25940 GUK1-203ENST00000366718 1275 ntAPPRIS P3 TSL 3 BASIC22.58■■□□□ 1.21
COL5A3P25940 FAM24B-201ENST00000368896 704 ntAPPRIS P1 TSL 2 BASIC22.58■■□□□ 1.21
COL5A3P25940 FAM19A5-204ENST00000406880 833 ntTSL 3 BASIC22.58■■□□□ 1.21
COL5A3P25940 PON3-203ENST00000427422 894 ntTSL 3 BASIC22.58■■□□□ 1.21
COL5A3P25940 AKR1A1-204ENST00000471651 1018 ntTSL 1 (best) BASIC22.58■■□□□ 1.21
COL5A3P25940 AL356481.3-201ENST00000630523 575 ntTSL 5 BASIC22.58■■□□□ 1.21
COL5A3P25940 TCP11L2-203ENST00000547153 1788 ntTSL 2 BASIC22.58■■□□□ 1.21
COL5A3P25940 TOR2A-205ENST00000463577 2211 ntTSL 1 (best) BASIC22.58■■□□□ 1.21
COL5A3P25940 PRRT4-207ENST00000535159 2897 ntAPPRIS P1 TSL 5 BASIC22.58■■□□□ 1.2
COL5A3P25940 PKMYT1-203ENST00000431515 2308 ntTSL 2 BASIC22.58■■□□□ 1.2
COL5A3P25940 CCDC115-201ENST00000259229 1646 ntAPPRIS P1 TSL 1 (best) BASIC22.58■■□□□ 1.2
COL5A3P25940 IP6K1-204ENST00000468463 1815 ntTSL 5 BASIC22.58■■□□□ 1.2
COL5A3P25940 FBXO24-201ENST00000241071 2276 ntAPPRIS P1 TSL 1 (best) BASIC22.58■■□□□ 1.2
COL5A3P25940 TULP1-201ENST00000229771 2162 ntAPPRIS P2 TSL 1 (best) BASIC22.57■■□□□ 1.2
COL5A3P25940 AC135782.1-201ENST00000537498 2154 ntTSL 2 BASIC22.57■■□□□ 1.2
Retrieved 100 of 98,524 protein–RNA pairs in 30.1 ms