Protein–RNA interactions for Protein: O95484

CLDN9, Claudin-9, humanhuman

Predictions only

Length 217 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CLDN9O95484 GCSHP2-201ENST00000560971 527 ntBASIC17.5■□□□□ 0.39
CLDN9O95484 AC034238.1-212ENST00000596137 723 ntTSL 5 BASIC17.5■□□□□ 0.39
CLDN9O95484 FMR1-AS1_2.1-201ENST00000613724 127 ntBASIC17.5■□□□□ 0.39
CLDN9O95484 MARK2-207ENST00000502399 2885 ntAPPRIS ALT2 TSL 5 BASIC17.5■□□□□ 0.39
CLDN9O95484 XXYLT1-201ENST00000310380 2727 ntAPPRIS P1 TSL 1 (best) BASIC17.5■□□□□ 0.39
CLDN9O95484 NINL-201ENST00000278886 4969 ntAPPRIS P3 TSL 1 (best) BASIC17.5■□□□□ 0.39
CLDN9O95484 ZNF419-204ENST00000415379 2186 ntAPPRIS ALT2 TSL 2 BASIC17.5■□□□□ 0.39
CLDN9O95484 PPM1H-201ENST00000228705 6353 ntAPPRIS P1 TSL 1 (best) BASIC17.5■□□□□ 0.39
CLDN9O95484 SNTB1-201ENST00000395601 5164 ntAPPRIS P1 TSL 5 BASIC17.5■□□□□ 0.39
CLDN9O95484 DIAPH1-201ENST00000253811 5789 ntAPPRIS ALT2 TSL 5 BASIC17.5■□□□□ 0.39
CLDN9O95484 BAZ1A-203ENST00000382422 5775 ntAPPRIS P1 TSL 1 (best) BASIC17.5■□□□□ 0.39
CLDN9O95484 DIAPH1-202ENST00000389054 5795 ntAPPRIS P4 TSL 5 BASIC17.5■□□□□ 0.39
CLDN9O95484 DIAPH1-204ENST00000398557 5789 ntAPPRIS ALT2 TSL 5 BASIC17.5■□□□□ 0.39
CLDN9O95484 UBR3-203ENST00000418381 7951 ntAPPRIS P1 TSL 5 BASIC17.5■□□□□ 0.39
CLDN9O95484 CXXC5-211ENST00000511048 1892 ntAPPRIS P1 TSL 2 BASIC17.5■□□□□ 0.39
CLDN9O95484 DIDO1-203ENST00000370366 2383 ntTSL 1 (best) BASIC17.5■□□□□ 0.39
CLDN9O95484 KBTBD11-201ENST00000320248 6710 ntAPPRIS P1 TSL 1 (best) BASIC17.5■□□□□ 0.39
CLDN9O95484 KDELC1-201ENST00000376004 2060 ntAPPRIS P1 TSL 1 (best) BASIC17.49■□□□□ 0.39
CLDN9O95484 INVS-203ENST00000374921 1654 ntTSL 1 (best) BASIC17.49■□□□□ 0.39
CLDN9O95484 AC132938.6-201ENST00000623828 1655 ntBASIC17.49■□□□□ 0.39
CLDN9O95484 VASH1-201ENST00000167106 5728 ntAPPRIS P1 TSL 1 (best) BASIC17.49■□□□□ 0.39
CLDN9O95484 EIF4ENIF1-202ENST00000344710 3115 ntTSL 1 (best) BASIC17.49■□□□□ 0.39
CLDN9O95484 HNRNPUL1-203ENST00000378215 2864 ntTSL 2 BASIC17.49■□□□□ 0.39
CLDN9O95484 CTSA-204ENST00000372484 2149 ntAPPRIS P1 TSL 1 (best) BASIC17.49■□□□□ 0.39
CLDN9O95484 SNCB-205ENST00000510387 730 ntAPPRIS P1 TSL 2 BASIC17.49■□□□□ 0.39
CLDN9O95484 ENDOV-202ENST00000517295 908 ntTSL 3 BASIC17.49■□□□□ 0.39
CLDN9O95484 AC021739.3-201ENST00000557908 855 ntTSL 2 BASIC17.49■□□□□ 0.39
CLDN9O95484 SMIM1-203ENST00000561886 491 ntTSL 2 BASIC17.49■□□□□ 0.39
CLDN9O95484 CDKN2A-213ENST00000579122 666 ntTSL 3 BASIC17.49■□□□□ 0.39
CLDN9O95484 SLC39A11-207ENST00000579732 1004 ntTSL 2 BASIC17.49■□□□□ 0.39
CLDN9O95484 AC140113.3-201ENST00000605663 199 ntBASIC17.49■□□□□ 0.39
CLDN9O95484 LINC00896-202ENST00000609602 2128 ntBASIC17.49■□□□□ 0.39
CLDN9O95484 SCARB2-201ENST00000264896 4792 ntAPPRIS P2 TSL 1 (best) BASIC17.49■□□□□ 0.39
CLDN9O95484 RAB4B-EGLN2-201ENST00000594136 2554 ntAPPRIS P1 TSL 2 BASIC17.49■□□□□ 0.39
CLDN9O95484 FBXL20-205ENST00000583610 1739 ntAPPRIS P1 TSL 2 BASIC17.49■□□□□ 0.39
CLDN9O95484 FMR1-205ENST00000370475 4308 ntAPPRIS P3 TSL 1 (best) BASIC17.49■□□□□ 0.39
CLDN9O95484 MAGED2-213ENST00000627068 1811 ntAPPRIS ALT2 TSL 5 BASIC17.49■□□□□ 0.39
CLDN9O95484 AC012317.2-201ENST00000623305 2251 ntBASIC17.49■□□□□ 0.39
CLDN9O95484 ANKRD6-201ENST00000339746 3073 ntAPPRIS ALT1 TSL 1 (best) BASIC17.49■□□□□ 0.39
CLDN9O95484 GINM1-201ENST00000367419 2024 ntAPPRIS P1 TSL 1 (best) BASIC17.48■□□□□ 0.39
CLDN9O95484 GRAP2-202ENST00000407075 1304 ntAPPRIS P1 TSL 1 (best) BASIC17.48■□□□□ 0.39
CLDN9O95484 IL6R-202ENST00000368485 5914 ntAPPRIS P4 TSL 1 (best) BASIC17.48■□□□□ 0.39
CLDN9O95484 GNE-201ENST00000377902 2565 ntAPPRIS P1 TSL 1 (best) BASIC17.48■□□□□ 0.39
CLDN9O95484 CCDC63-202ENST00000545036 1887 ntAPPRIS ALT2 TSL 2 BASIC17.48■□□□□ 0.39
CLDN9O95484 SEMA6C-209ENST00000613223 1950 ntTSL 5 BASIC17.48■□□□□ 0.39
CLDN9O95484 BPGM-202ENST00000393132 2051 ntAPPRIS P1 TSL 5 BASIC17.48■□□□□ 0.39
CLDN9O95484 JPT1-203ENST00000409753 1605 ntAPPRIS P1 TSL 1 (best) BASIC17.48■□□□□ 0.39
CLDN9O95484 SEMA6B-201ENST00000586582 3986 ntAPPRIS P2 TSL 1 (best) BASIC17.48■□□□□ 0.39
CLDN9O95484 NETO1-201ENST00000327305 3058 ntAPPRIS P1 TSL 1 (best) BASIC17.48■□□□□ 0.39
CLDN9O95484 WWOX-203ENST00000406884 1701 ntTSL 1 (best) BASIC17.48■□□□□ 0.39
CLDN9O95484 NEXN-AS1-201ENST00000421331 2292 ntTSL 2 BASIC17.48■□□□□ 0.39
CLDN9O95484 PEX11G-201ENST00000221480 1062 ntAPPRIS P1 TSL 1 (best) BASIC17.48■□□□□ 0.39
CLDN9O95484 COMMD1-201ENST00000311832 911 ntAPPRIS P1 TSL 1 (best) BASIC17.48■□□□□ 0.39
CLDN9O95484 CHTOP-202ENST00000368687 1094 ntTSL 1 (best) BASIC17.48■□□□□ 0.39
CLDN9O95484 CD70-202ENST00000423145 881 ntTSL 2 BASIC17.48■□□□□ 0.39
CLDN9O95484 ATP5G1P1-201ENST00000448724 379 ntBASIC17.48■□□□□ 0.39
CLDN9O95484 RPL39L-203ENST00000455270 653 ntAPPRIS P1 TSL 2 BASIC17.48■□□□□ 0.39
CLDN9O95484 MIR3936HG-202ENST00000457998 733 ntTSL 2 BASIC17.48■□□□□ 0.39
CLDN9O95484 AP003396.1-201ENST00000501918 507 ntTSL 5 BASIC17.48■□□□□ 0.39
CLDN9O95484 CD81-212ENST00000526072 1172 ntTSL 5 BASIC17.48■□□□□ 0.39
CLDN9O95484 MRPL46-202ENST00000558531 1002 ntTSL 2 BASIC17.48■□□□□ 0.39
CLDN9O95484 AC002094.1-201ENST00000591482 1050 ntTSL 2 BASIC17.48■□□□□ 0.39
CLDN9O95484 CENPS-CORT-205ENST00000602787 571 ntAPPRIS P1 TSL 3 BASIC17.48■□□□□ 0.39
CLDN9O95484 ADAMTS7-201ENST00000388820 5490 ntAPPRIS P1 TSL 1 (best) BASIC17.48■□□□□ 0.39
CLDN9O95484 DMRTA1-201ENST00000325870 5569 ntAPPRIS P1 TSL 1 (best) BASIC17.48■□□□□ 0.39
CLDN9O95484 FZR1-203ENST00000441788 5212 ntAPPRIS P3 TSL 1 (best) BASIC17.48■□□□□ 0.39
CLDN9O95484 ZNF22-201ENST00000298299 2551 ntAPPRIS P1 TSL 1 (best) BASIC17.48■□□□□ 0.39
CLDN9O95484 NEU1-206ENST00000375631 2045 ntAPPRIS P1 TSL 1 (best) BASIC17.48■□□□□ 0.39
CLDN9O95484 ZFC3H1-211ENST00000552037 1484 ntTSL 1 (best) BASIC17.48■□□□□ 0.39
CLDN9O95484 NME9-203ENST00000383180 2133 ntTSL 2 BASIC17.48■□□□□ 0.39
CLDN9O95484 AC006116.8-202ENST00000587620 1550 ntBASIC17.48■□□□□ 0.39
CLDN9O95484 FIGNL2-202ENST00000618634 4812 ntAPPRIS P1 TSL 5 BASIC17.48■□□□□ 0.39
CLDN9O95484 BAZ1B-201ENST00000339594 6102 ntAPPRIS P1 TSL 1 (best) BASIC17.48■□□□□ 0.39
CLDN9O95484 EIF3C-211ENST00000566866 2986 ntAPPRIS P1 TSL 1 (best) BASIC17.48■□□□□ 0.39
CLDN9O95484 AP001273.2-201ENST00000638767 2993 ntAPPRIS P1 TSL 5 BASIC17.48■□□□□ 0.39
CLDN9O95484 VRK3-225ENST00000601912 1668 ntAPPRIS ALT2 TSL 5 BASIC17.48■□□□□ 0.39
CLDN9O95484 ARSE-201ENST00000381134 1853 ntAPPRIS P1 TSL 1 (best) BASIC17.48■□□□□ 0.39
CLDN9O95484 ACSS2-201ENST00000253382 2925 ntTSL 2 BASIC17.48■□□□□ 0.39
CLDN9O95484 ZNF211-203ENST00000299871 2577 ntAPPRIS ALT2 TSL 3 BASIC17.47■□□□□ 0.39
CLDN9O95484 DVL2-209ENST00000575458 2659 ntAPPRIS ALT2 TSL 2 BASIC17.47■□□□□ 0.39
CLDN9O95484 JKAMP-201ENST00000261247 1726 ntAPPRIS P1 TSL 1 (best) BASIC17.47■□□□□ 0.39
CLDN9O95484 EIF3B-201ENST00000360876 3055 ntAPPRIS P1 TSL 1 (best) BASIC17.47■□□□□ 0.39
CLDN9O95484 C6orf106-202ENST00000374023 4418 ntAPPRIS P4 TSL 1 (best) BASIC17.47■□□□□ 0.39
CLDN9O95484 C11orf58-201ENST00000228136 2049 ntAPPRIS P1 TSL 1 (best) BASIC17.47■□□□□ 0.39
CLDN9O95484 GLB1-202ENST00000307377 2018 ntTSL 1 (best) BASIC17.47■□□□□ 0.39
CLDN9O95484 CCDC7-203ENST00000362006 2133 ntAPPRIS P2 TSL 1 (best) BASIC17.47■□□□□ 0.39
CLDN9O95484 POMZP3-201ENST00000275569 1259 ntTSL 2 BASIC17.47■□□□□ 0.39
CLDN9O95484 AC098829.1-201ENST00000502344 630 ntTSL 3 BASIC17.47■□□□□ 0.39
CLDN9O95484 CYB561D2-210ENST00000607121 1004 ntTSL 2 BASIC17.47■□□□□ 0.39
CLDN9O95484 AL023973.1-201ENST00000624619 620 ntBASIC17.47■□□□□ 0.39
CLDN9O95484 AL031432.5-201ENST00000641059 760 ntBASIC17.47■□□□□ 0.39
CLDN9O95484 ZFYVE21-202ENST00000311141 1383 ntAPPRIS P3 TSL 1 (best) BASIC17.47■□□□□ 0.39
CLDN9O95484 SYNE4-201ENST00000324444 1354 ntAPPRIS P3 TSL 5 BASIC17.47■□□□□ 0.39
CLDN9O95484 PDIA2-202ENST00000404312 1575 ntAPPRIS ALT2 TSL 5 BASIC17.47■□□□□ 0.39
CLDN9O95484 FCGRT-202ENST00000426395 1559 ntAPPRIS P1 TSL 1 (best) BASIC17.47■□□□□ 0.39
CLDN9O95484 TSKS-201ENST00000246801 1883 ntAPPRIS P2 TSL 1 (best) BASIC17.47■□□□□ 0.39
CLDN9O95484 SLC22A11-202ENST00000377581 1975 ntTSL 5 BASIC17.47■□□□□ 0.39
CLDN9O95484 AL109910.2-201ENST00000607733 1953 ntTSL 2 BASIC17.47■□□□□ 0.39
CLDN9O95484 IL18BP-207ENST00000404792 2172 ntAPPRIS P2 TSL 1 (best) BASIC17.47■□□□□ 0.39
CLDN9O95484 CXXC1-202ENST00000412036 2280 ntAPPRIS ALT1 TSL 1 (best) BASIC17.47■□□□□ 0.39
Retrieved 100 of 98,524 protein–RNA pairs in 30.9 ms