Protein–RNA interactions for Protein: O43364

HOXA2, Homeobox protein Hox-A2, humanhuman

Predictions only

Length 376 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HOXA2O43364 FAM197Y3-203ENST00000618346 717 ntBASIC19.27■□□□□ 0.68
HOXA2O43364 AC132872.3-201ENST00000620937 629 ntTSL 5 BASIC19.27■□□□□ 0.68
HOXA2O43364 PYCR1-217ENST00000629768 1740 ntTSL 5 BASIC19.27■□□□□ 0.68
HOXA2O43364 KCTD13-207ENST00000568000 2528 ntAPPRIS P1 TSL 1 (best) BASIC19.27■□□□□ 0.68
HOXA2O43364 REEP4-202ENST00000334530 1476 ntTSL 1 (best) BASIC19.27■□□□□ 0.67
HOXA2O43364 ADCK5-201ENST00000308860 1949 ntAPPRIS P1 TSL 1 (best) BASIC19.27■□□□□ 0.67
HOXA2O43364 WNK1-203ENST00000447667 1902 ntTSL 1 (best) BASIC19.27■□□□□ 0.67
HOXA2O43364 ZNF12-201ENST00000342651 2921 ntAPPRIS ALT2 TSL 2 BASIC19.27■□□□□ 0.67
HOXA2O43364 KCTD12-201ENST00000377474 6225 ntAPPRIS P1 BASIC19.27■□□□□ 0.67
HOXA2O43364 ARHGEF4-202ENST00000355771 1872 ntAPPRIS ALT2 TSL 1 (best) BASIC19.26■□□□□ 0.67
HOXA2O43364 TBX20-201ENST00000408931 1871 ntAPPRIS P1 TSL 1 (best) BASIC19.26■□□□□ 0.67
HOXA2O43364 LINC01105-206ENST00000456327 1434 ntTSL 5 BASIC19.26■□□□□ 0.67
HOXA2O43364 HTRA4-201ENST00000302495 2095 ntAPPRIS P1 TSL 1 (best) BASIC19.26■□□□□ 0.67
HOXA2O43364 TCEAL4-201ENST00000372629 1511 ntAPPRIS ALT2 TSL 1 (best) BASIC19.26■□□□□ 0.67
HOXA2O43364 TP53I3-202ENST00000335934 1635 ntAPPRIS P1 TSL 1 (best) BASIC19.26■□□□□ 0.67
HOXA2O43364 ZNF324B-202ENST00000545523 2368 ntAPPRIS P1 TSL 1 (best) BASIC19.26■□□□□ 0.67
HOXA2O43364 MCTP1-218ENST00000515393 5396 ntAPPRIS P3 TSL 1 (best) BASIC19.26■□□□□ 0.67
HOXA2O43364 C11orf80-203ENST00000525449 1821 ntAPPRIS ALT2 TSL 1 (best) BASIC19.26■□□□□ 0.67
HOXA2O43364 DGKZ-214ENST00000527911 3337 ntAPPRIS ALT2 TSL 1 (best) BASIC19.26■□□□□ 0.67
HOXA2O43364 CNTNAP3B-202ENST00000341990 2666 ntTSL 2 BASIC19.26■□□□□ 0.67
HOXA2O43364 CREM-211ENST00000374726 1207 ntTSL 1 (best) BASIC19.26■□□□□ 0.67
HOXA2O43364 ANKRD13D-218ENST00000515828 1111 ntTSL 1 (best) BASIC19.26■□□□□ 0.67
HOXA2O43364 AL450267.1-201ENST00000557174 520 ntTSL 5 BASIC19.26■□□□□ 0.67
HOXA2O43364 TMEM220-AS1-202ENST00000580899 561 ntTSL 4 BASIC19.26■□□□□ 0.67
HOXA2O43364 AC008105.3-202ENST00000585471 1077 ntTSL 1 (best) BASIC19.26■□□□□ 0.67
HOXA2O43364 FBF1-204ENST00000586631 621 ntAPPRIS ALT2 TSL 2 BASIC19.26■□□□□ 0.67
HOXA2O43364 MKNK2-212ENST00000591588 631 ntTSL 2 BASIC19.26■□□□□ 0.67
HOXA2O43364 NPAS4-204ENST00000639555 878 ntTSL 5 BASIC19.26■□□□□ 0.67
HOXA2O43364 DLG3-202ENST00000374355 5074 ntTSL 1 (best) BASIC19.26■□□□□ 0.67
HOXA2O43364 DMAP1-201ENST00000315913 1552 ntAPPRIS P1 TSL 1 (best) BASIC19.26■□□□□ 0.67
HOXA2O43364 FMR1-207ENST00000439526 3699 ntTSL 1 (best) BASIC19.26■□□□□ 0.67
HOXA2O43364 RBM45-201ENST00000286070 1785 ntAPPRIS P2 TSL 1 (best) BASIC19.26■□□□□ 0.67
HOXA2O43364 GLS-202ENST00000338435 4475 ntAPPRIS ALT1 TSL 1 (best) BASIC19.26■□□□□ 0.67
HOXA2O43364 ZIC3-202ENST00000370606 1968 ntTSL 5 BASIC19.26■□□□□ 0.67
HOXA2O43364 COL9A3-201ENST00000343916 2485 ntAPPRIS P1 TSL 1 (best) BASIC19.26■□□□□ 0.67
HOXA2O43364 RIOX2-201ENST00000333396 5347 ntAPPRIS ALT1 TSL 1 (best) BASIC19.26■□□□□ 0.67
HOXA2O43364 ISCU-205ENST00000535729 1330 ntTSL 2 BASIC19.25■□□□□ 0.67
HOXA2O43364 TMUB2-213ENST00000589856 1505 ntTSL 2 BASIC19.25■□□□□ 0.67
HOXA2O43364 HLA-A-203ENST00000376809 1611 ntAPPRIS P1 BASIC19.25■□□□□ 0.67
HOXA2O43364 IRF3-203ENST00000377139 1613 ntAPPRIS P1 TSL 1 (best) BASIC19.25■□□□□ 0.67
HOXA2O43364 PRSS23-209ENST00000533902 2043 ntTSL 4 BASIC19.25■□□□□ 0.67
HOXA2O43364 NFATC4-220ENST00000555393 2235 ntTSL 1 (best) BASIC19.25■□□□□ 0.67
HOXA2O43364 WNT7B-202ENST00000409496 2285 ntAPPRIS ALT1 TSL 2 BASIC19.25■□□□□ 0.67
HOXA2O43364 AC242426.3-201ENST00000440377 1571 ntTSL 2 BASIC19.25■□□□□ 0.67
HOXA2O43364 C5orf30-203ENST00000515669 1573 ntAPPRIS P1 TSL 3 BASIC19.25■□□□□ 0.67
HOXA2O43364 TMPRSS12-201ENST00000398458 1450 ntAPPRIS P1 TSL 1 (best) BASIC19.25■□□□□ 0.67
HOXA2O43364 SLC22A1-203ENST00000457470 1452 ntTSL 5 BASIC19.25■□□□□ 0.67
HOXA2O43364 C16orf70-208ENST00000569600 1353 ntAPPRIS P1 TSL 1 (best) BASIC19.25■□□□□ 0.67
HOXA2O43364 RPS12-201ENST00000230050 631 ntAPPRIS P1 TSL 1 (best) BASIC19.25■□□□□ 0.67
HOXA2O43364 OTOS-202ENST00000391989 645 ntAPPRIS P1 TSL 3 BASIC19.25■□□□□ 0.67
HOXA2O43364 CMC2-212ENST00000565650 671 ntAPPRIS P1 TSL 2 BASIC19.25■□□□□ 0.67
HOXA2O43364 RNF151-202ENST00000569210 853 ntTSL 2 BASIC19.25■□□□□ 0.67
HOXA2O43364 AC127496.4-201ENST00000571591 549 ntTSL 4 BASIC19.25■□□□□ 0.67
HOXA2O43364 AC005944.1-201ENST00000592758 564 ntTSL 3 BASIC19.25■□□□□ 0.67
HOXA2O43364 Z83851.2-201ENST00000609564 659 ntBASIC19.25■□□□□ 0.67
HOXA2O43364 AL022326.1-202ENST00000641533 845 ntBASIC19.25■□□□□ 0.67
HOXA2O43364 AOC3-204ENST00000591562 2522 ntTSL 2 BASIC19.25■□□□□ 0.67
HOXA2O43364 NEIL2-202ENST00000403422 2016 ntTSL 2 BASIC19.25■□□□□ 0.67
HOXA2O43364 AC079776.2-201ENST00000641154 1609 ntBASIC19.25■□□□□ 0.67
HOXA2O43364 FPGS-203ENST00000373247 2279 ntAPPRIS P1 TSL 1 (best) BASIC19.25■□□□□ 0.67
HOXA2O43364 BIN2-210ENST00000615107 2255 ntAPPRIS P1 TSL 1 (best) BASIC19.25■□□□□ 0.67
HOXA2O43364 RPP25-201ENST00000322177 3049 ntAPPRIS P1 BASIC19.25■□□□□ 0.67
HOXA2O43364 DUOXA1-201ENST00000267803 1996 ntTSL 1 (best) BASIC19.24■□□□□ 0.67
HOXA2O43364 CTSA-201ENST00000191018 1898 ntTSL 1 (best) BASIC19.24■□□□□ 0.67
HOXA2O43364 ABCB8-211ENST00000477092 1596 ntTSL 5 BASIC19.24■□□□□ 0.67
HOXA2O43364 C3orf70-201ENST00000335012 5901 ntAPPRIS P1 TSL 1 (best) BASIC19.24■□□□□ 0.67
HOXA2O43364 TINAGL1-202ENST00000457433 2140 ntAPPRIS ALT2 TSL 2 BASIC19.24■□□□□ 0.67
HOXA2O43364 AC062028.1-203ENST00000447433 1472 ntTSL 1 (best) BASIC19.24■□□□□ 0.67
HOXA2O43364 TBX21-201ENST00000177694 2572 ntAPPRIS P1 TSL 1 (best) BASIC19.24■□□□□ 0.67
HOXA2O43364 PIGU-202ENST00000374820 1248 ntAPPRIS ALT2 TSL 1 (best) BASIC19.24■□□□□ 0.67
HOXA2O43364 GAR1-202ENST00000394631 1011 ntAPPRIS P1 TSL 1 (best) BASIC19.24■□□□□ 0.67
HOXA2O43364 MED15P5-201ENST00000423150 992 ntBASIC19.24■□□□□ 0.67
HOXA2O43364 AC103564.2-201ENST00000432853 1299 ntBASIC19.24■□□□□ 0.67
HOXA2O43364 C11orf74-203ENST00000446510 1062 ntAPPRIS P3 TSL 5 BASIC19.24■□□□□ 0.67
HOXA2O43364 AC016999.1-201ENST00000447880 452 ntTSL 3 BASIC19.24■□□□□ 0.67
HOXA2O43364 AC069287.3-201ENST00000527297 589 ntTSL 5 BASIC19.24■□□□□ 0.67
HOXA2O43364 UBXN1-210ENST00000529640 1110 ntAPPRIS ALT1 TSL 5 BASIC19.24■□□□□ 0.67
HOXA2O43364 AC133919.2-201ENST00000565965 589 ntTSL 4 BASIC19.24■□□□□ 0.67
HOXA2O43364 MXD3-202ENST00000427908 2269 ntTSL 2 BASIC19.24■□□□□ 0.67
HOXA2O43364 RUSC1-214ENST00000490373 1700 ntTSL 1 (best) BASIC19.24■□□□□ 0.67
HOXA2O43364 YTHDC2-207ENST00000515883 2629 ntTSL 1 (best) BASIC19.24■□□□□ 0.67
HOXA2O43364 CCDC88C-203ENST00000389856 1641 ntTSL 1 (best) BASIC19.24■□□□□ 0.67
HOXA2O43364 MRPL10-203ENST00000414011 1622 ntTSL 3 BASIC19.24■□□□□ 0.67
HOXA2O43364 KIF25-203ENST00000443060 1613 ntAPPRIS P1 TSL 5 BASIC19.24■□□□□ 0.67
HOXA2O43364 RIMKLB-202ENST00000357529 5830 ntAPPRIS P1 TSL 5 BASIC19.24■□□□□ 0.67
HOXA2O43364 RPL13P5-202ENST00000412023 1438 ntTSL 2 BASIC19.24■□□□□ 0.67
HOXA2O43364 FGFR2-208ENST00000360144 3001 ntTSL 2 BASIC19.24■□□□□ 0.67
HOXA2O43364 AL031598.1-201ENST00000561511 1773 ntBASIC19.24■□□□□ 0.67
HOXA2O43364 KDM5C-203ENST00000375383 5122 ntAPPRIS ALT2 TSL 5 BASIC19.24■□□□□ 0.67
HOXA2O43364 FIP1L1-207ENST00000507922 1335 ntTSL 1 (best) BASIC19.24■□□□□ 0.67
HOXA2O43364 LRRC43-201ENST00000339777 2028 ntAPPRIS P2 TSL 5 BASIC19.24■□□□□ 0.67
HOXA2O43364 CPQ-201ENST00000220763 1947 ntAPPRIS P1 TSL 1 (best) BASIC19.23■□□□□ 0.67
HOXA2O43364 CSK-202ENST00000439220 1900 ntAPPRIS P1 TSL 2 BASIC19.23■□□□□ 0.67
HOXA2O43364 SHF-201ENST00000290894 2500 ntAPPRIS P3 TSL 2 BASIC19.23■□□□□ 0.67
HOXA2O43364 AL355315.1-201ENST00000370649 1848 ntAPPRIS P1 TSL 2 BASIC19.23■□□□□ 0.67
HOXA2O43364 GPANK1-204ENST00000375900 1814 ntAPPRIS P1 TSL 2 BASIC19.23■□□□□ 0.67
HOXA2O43364 ZDHHC5-201ENST00000287169 4666 ntAPPRIS P1 TSL 1 (best) BASIC19.23■□□□□ 0.67
HOXA2O43364 PSTK-201ENST00000368887 1705 ntAPPRIS P2 TSL 1 (best) BASIC19.23■□□□□ 0.67
HOXA2O43364 EVC-201ENST00000264956 6431 ntAPPRIS P1 TSL 1 (best) BASIC19.23■□□□□ 0.67
HOXA2O43364 SPNS2-201ENST00000329078 3447 ntAPPRIS P1 TSL 1 (best) BASIC19.23■□□□□ 0.67
Retrieved 100 of 98,524 protein–RNA pairs in 25.4 ms