Protein–RNA interactions for Protein: O14529

CUX2, Homeobox protein cut-like 2, humanhuman

Predictions only

Length 1,486 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CUX2O14529 U2AF2-202ENST00000450554 3022 ntAPPRIS ALT1 TSL 1 (best) BASIC30.69■■■□□ 2.5
CUX2O14529 ATP6V1G2-205ENST00000303892 1588 ntAPPRIS P1 TSL 1 (best) BASIC30.69■■■□□ 2.5
CUX2O14529 TATDN3-214ENST00000532324 1381 ntTSL 2 BASIC30.69■■■□□ 2.5
CUX2O14529 PUF60-201ENST00000313352 1804 ntAPPRIS ALT1 TSL 1 (best) BASIC30.69■■■□□ 2.5
CUX2O14529 VWA8-AS1-201ENST00000611103 2079 ntTSL 2 BASIC30.69■■■□□ 2.5
CUX2O14529 INTS11-250ENST00000620829 1862 ntTSL 2 BASIC30.69■■■□□ 2.5
CUX2O14529 NUTF2-201ENST00000219169 2321 ntAPPRIS P1 TSL 1 (best) BASIC30.69■■■□□ 2.5
CUX2O14529 RPSAP31-202ENST00000445165 716 ntTSL 2 BASIC30.69■■■□□ 2.5
CUX2O14529 RIN3-211ENST00000557762 517 ntTSL 3 BASIC30.69■■■□□ 2.5
CUX2O14529 ZFPM1-204ENST00000563351 808 ntTSL 2 BASIC30.69■■■□□ 2.5
CUX2O14529 AC004790.2-201ENST00000623588 572 ntBASIC30.69■■■□□ 2.5
CUX2O14529 HAPLN3-204ENST00000562889 1547 ntTSL 5 BASIC30.69■■■□□ 2.5
CUX2O14529 MAGI2-211ENST00000535697 6146 ntTSL 5 BASIC30.68■■■□□ 2.5
CUX2O14529 SIX5-203ENST00000560168 1975 ntTSL 4 BASIC30.68■■■□□ 2.5
CUX2O14529 MTMR9LP-203ENST00000426597 1545 ntBASIC30.68■■■□□ 2.5
CUX2O14529 SEH1L-202ENST00000399892 1846 ntTSL 1 (best) BASIC30.68■■■□□ 2.5
CUX2O14529 AC007952.1-201ENST00000399087 553 ntTSL 1 (best) BASIC30.68■■■□□ 2.5
CUX2O14529 AC007952.2-202ENST00000399093 556 ntTSL 1 (best) BASIC30.68■■■□□ 2.5
CUX2O14529 SECTM1-202ENST00000580437 1030 ntAPPRIS ALT2 TSL 2 BASIC30.68■■■□□ 2.5
CUX2O14529 ZNF667-AS1-202ENST00000586091 678 ntTSL 2 BASIC30.68■■■□□ 2.5
CUX2O14529 H3F3B-208ENST00000589599 576 ntAPPRIS P1 TSL 3 BASIC30.68■■■□□ 2.5
CUX2O14529 HNRNPDL-206ENST00000602300 1291 ntAPPRIS ALT2 TSL 1 (best) BASIC30.68■■■□□ 2.5
CUX2O14529 AC106017.2-202ENST00000628484 536 ntTSL 1 (best) BASIC30.68■■■□□ 2.5
CUX2O14529 PRF1-203ENST00000638674 1080 ntTSL 5 BASIC30.68■■■□□ 2.5
CUX2O14529 AC006001.3-204ENST00000638711 2103 ntTSL 5 BASIC30.68■■■□□ 2.5
CUX2O14529 PODXL2-201ENST00000342480 2186 ntAPPRIS P1 TSL 1 (best) BASIC30.68■■■□□ 2.5
CUX2O14529 TAF15-215ENST00000605844 2191 ntAPPRIS P3 TSL 1 (best) BASIC30.68■■■□□ 2.5
CUX2O14529 TM9SF1-203ENST00000524835 1938 ntTSL 2 BASIC30.68■■■□□ 2.5
CUX2O14529 MYCN-201ENST00000281043 2602 ntAPPRIS P1 TSL 5 BASIC30.67■■■□□ 2.5
CUX2O14529 GFAP-203ENST00000435360 1779 ntTSL 2 BASIC30.67■■■□□ 2.5
CUX2O14529 GNRHR2-201ENST00000312753 1599 ntTSL 1 (best) BASIC30.67■■■□□ 2.5
CUX2O14529 ALDH3A2-225ENST00000630662 1558 ntTSL 5 BASIC30.67■■■□□ 2.5
CUX2O14529 SNHG5-201ENST00000369605 1032 ntTSL 1 (best) BASIC30.67■■■□□ 2.5
CUX2O14529 NDUFB8-202ENST00000370320 684 ntTSL 3 BASIC30.67■■■□□ 2.5
CUX2O14529 MIR943-201ENST00000401286 94 ntBASIC30.67■■■□□ 2.5
CUX2O14529 AL807752.3-201ENST00000456356 748 ntTSL 2 BASIC30.67■■■□□ 2.5
CUX2O14529 FBXL21-206ENST00000495672 589 ntTSL 4 BASIC30.67■■■□□ 2.5
CUX2O14529 GATB-205ENST00000508611 605 ntTSL 2 BASIC30.67■■■□□ 2.5
CUX2O14529 AC104985.1-201ENST00000587528 507 ntTSL 3 BASIC30.67■■■□□ 2.5
CUX2O14529 TIMM8A-201ENST00000372902 1664 ntAPPRIS P1 TSL 1 (best) BASIC30.67■■■□□ 2.5
CUX2O14529 ZDHHC19-201ENST00000296326 1306 ntAPPRIS P1 TSL 5 BASIC30.67■■■□□ 2.5
CUX2O14529 NTRK3-206ENST00000540489 2145 ntTSL 5 BASIC30.67■■■□□ 2.5
CUX2O14529 ADAP1-217ENST00000611167 2118 ntTSL 5 BASIC30.67■■■□□ 2.5
CUX2O14529 MUTYH-203ENST00000372098 1839 ntTSL 1 (best) BASIC30.67■■■□□ 2.5
CUX2O14529 MUTYH-204ENST00000372104 1823 ntAPPRIS ALT2 TSL 1 (best) BASIC30.67■■■□□ 2.5
CUX2O14529 MUTYH-205ENST00000372110 1809 ntTSL 1 (best) BASIC30.67■■■□□ 2.5
CUX2O14529 CAPZB-204ENST00000375144 1568 ntTSL 1 (best) BASIC30.66■■■□□ 2.5
CUX2O14529 ZNF385C-201ENST00000436535 1572 ntAPPRIS P1 TSL 5 BASIC30.66■■■□□ 2.5
CUX2O14529 CAPZB-202ENST00000264203 2068 ntTSL 2 BASIC30.66■■■□□ 2.5
CUX2O14529 TARBP1-201ENST00000040877 5130 ntAPPRIS P1 TSL 1 (best) BASIC30.66■■■□□ 2.5
CUX2O14529 ICOSLG-201ENST00000344330 1009 ntAPPRIS ALT2 TSL 1 (best) BASIC30.66■■■□□ 2.5
CUX2O14529 ZHX1-C8orf76-201ENST00000357082 1257 ntAPPRIS P2 TSL 2 BASIC30.66■■■□□ 2.5
CUX2O14529 AL034550.1-201ENST00000442179 986 ntTSL 1 (best) BASIC30.66■■■□□ 2.5
CUX2O14529 RPS15P9-201ENST00000494093 319 ntBASIC30.66■■■□□ 2.5
CUX2O14529 TMEM106C-214ENST00000550161 976 ntTSL 3 BASIC30.66■■■□□ 2.5
CUX2O14529 ATP6V0C-202ENST00000564973 1081 ntTSL 2 BASIC30.66■■■□□ 2.5
CUX2O14529 ZNF667-AS1-204ENST00000588158 921 ntTSL 3 BASIC30.66■■■□□ 2.5
CUX2O14529 AC068137.2-201ENST00000605408 478 ntBASIC30.66■■■□□ 2.5
CUX2O14529 AL662799.1-202ENST00000614205 422 ntBASIC30.66■■■□□ 2.5
CUX2O14529 AC141586.3-201ENST00000562166 1838 ntBASIC30.66■■■□□ 2.5
CUX2O14529 CORO1B-201ENST00000341356 1881 ntAPPRIS P1 TSL 1 (best) BASIC30.66■■■□□ 2.5
CUX2O14529 GUCA1A-201ENST00000053469 1874 ntAPPRIS P1 TSL 1 (best) BASIC30.66■■■□□ 2.5
CUX2O14529 CRYL1-202ENST00000382812 1581 ntTSL 1 (best) BASIC30.66■■■□□ 2.5
CUX2O14529 RBM45-207ENST00000616198 1788 ntAPPRIS ALT1 TSL 1 (best) BASIC30.65■■■□□ 2.5
CUX2O14529 ABLIM2-205ENST00000428004 2573 ntTSL 1 (best) BASIC30.65■■■□□ 2.5
CUX2O14529 P2RX2-206ENST00000389110 1867 ntAPPRIS ALT2 TSL 1 (best) BASIC30.65■■■□□ 2.5
CUX2O14529 NYAP1-202ENST00000454988 2777 ntTSL 5 BASIC30.65■■■□□ 2.5
CUX2O14529 PNKD-201ENST00000248451 758 ntTSL 1 (best) BASIC30.65■■■□□ 2.5
CUX2O14529 CKLF-204ENST00000362093 412 ntAPPRIS ALT2 TSL 1 (best) BASIC30.65■■■□□ 2.5
CUX2O14529 AC083973.1-206ENST00000518213 815 ntTSL 3 BASIC30.65■■■□□ 2.5
CUX2O14529 AC021744.1-201ENST00000518354 453 ntTSL 3 BASIC30.65■■■□□ 2.5
CUX2O14529 AC010336.2-201ENST00000564226 506 ntBASIC30.65■■■□□ 2.5
CUX2O14529 HYAL1-203ENST00000395143 1522 ntTSL 1 (best) BASIC30.65■■■□□ 2.5
CUX2O14529 AC242426.3-201ENST00000440377 1571 ntTSL 2 BASIC30.65■■■□□ 2.5
CUX2O14529 ZNF420-201ENST00000304239 1945 ntTSL 2 BASIC30.65■■■□□ 2.5
CUX2O14529 MMP28-201ENST00000605424 1928 ntAPPRIS P3 TSL 1 (best) BASIC30.65■■■□□ 2.5
CUX2O14529 USP48-205ENST00000421625 2818 ntTSL 2 BASIC30.64■■■□□ 2.5
CUX2O14529 SLAIN1-206ENST00000418532 2855 ntAPPRIS ALT2 TSL 5 BASIC30.64■■■□□ 2.5
CUX2O14529 ERCC1-201ENST00000013807 1278 ntTSL 1 (best) BASIC30.64■■■□□ 2.5
CUX2O14529 KLF2P3-201ENST00000451977 1087 ntBASIC30.64■■■□□ 2.5
CUX2O14529 ASF1B-202ENST00000474890 765 ntTSL 2 BASIC30.64■■■□□ 2.5
CUX2O14529 AC023355.1-201ENST00000560323 752 ntTSL 3 BASIC30.64■■■□□ 2.5
CUX2O14529 AC103808.2-201ENST00000582755 594 ntTSL 4 BASIC30.64■■■□□ 2.5
CUX2O14529 GOLGA2-215ENST00000639983 1038 ntTSL 1 (best) BASIC30.64■■■□□ 2.5
CUX2O14529 HPCA-201ENST00000373467 1468 ntAPPRIS P1 TSL 1 (best) BASIC30.64■■■□□ 2.5
CUX2O14529 AC008393.1-201ENST00000499601 1454 ntTSL 1 (best) BASIC30.64■■■□□ 2.5
CUX2O14529 GCOM1-201ENST00000380568 1516 ntAPPRIS ALT2 TSL 2 BASIC30.64■■■□□ 2.5
CUX2O14529 TICAM1-202ENST00000621756 1650 ntTSL 5 BASIC30.64■■■□□ 2.5
CUX2O14529 ANXA8-203ENST00000583874 1860 ntTSL 1 (best) BASIC30.64■■■□□ 2.5
CUX2O14529 ADD1-202ENST00000355842 4743 ntTSL 1 (best) BASIC30.64■■■□□ 2.5
CUX2O14529 POMGNT1-201ENST00000371984 2728 ntAPPRIS P1 TSL 1 (best) BASIC30.64■■■□□ 2.5
CUX2O14529 NGEF-202ENST00000373552 2286 ntAPPRIS P1 TSL 2 BASIC30.64■■■□□ 2.49
CUX2O14529 IRF7-201ENST00000330243 1992 ntAPPRIS P4 TSL 5 BASIC30.64■■■□□ 2.49
CUX2O14529 C16orf59-204ENST00000563531 1864 ntAPPRIS ALT2 TSL 5 BASIC30.64■■■□□ 2.49
CUX2O14529 TMEM82-201ENST00000375782 1520 ntAPPRIS P1 TSL 1 (best) BASIC30.64■■■□□ 2.49
CUX2O14529 CYP51A1P2-201ENST00000419457 1499 ntBASIC30.64■■■□□ 2.49
CUX2O14529 AZIN2-203ENST00000373441 1443 ntTSL 1 (best) BASIC30.64■■■□□ 2.49
CUX2O14529 ATP6V0E1-203ENST00000519374 1433 ntAPPRIS P1 TSL 1 (best) BASIC30.64■■■□□ 2.49
CUX2O14529 ENDOV-201ENST00000323854 1226 ntTSL 1 (best) BASIC30.63■■■□□ 2.49
CUX2O14529 AL512356.2-201ENST00000546955 174 ntBASIC30.63■■■□□ 2.49
Retrieved 100 of 98,524 protein–RNA pairs in 35.2 ms