Protein–RNA interactions for Protein: Q9UPT8

ZC3H4, Zinc finger CCCH domain-containing protein 4, humanhuman

Known RBP Predictions only

Length 1,303 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
ZC3H4Q9UPT8 PHYKPL-201ENST00000308158 2038 ntAPPRIS P1 TSL 1 (best) BASIC21.8■■□□□ 1.08
ZC3H4Q9UPT8 TTC12-202ENST00000393020 2541 ntTSL 5 BASIC21.8■■□□□ 1.08
ZC3H4Q9UPT8 NEIL3-201ENST00000264596 2408 ntAPPRIS P1 TSL 1 (best) BASIC21.8■■□□□ 1.08
ZC3H4Q9UPT8 SIVA1-202ENST00000347067 550 ntTSL 1 (best) BASIC21.8■■□□□ 1.08
ZC3H4Q9UPT8 AL139400.1-201ENST00000366220 510 ntBASIC21.8■■□□□ 1.08
ZC3H4Q9UPT8 OPN1LW-201ENST00000369951 1261 ntAPPRIS P1 TSL 1 (best) BASIC21.8■■□□□ 1.08
ZC3H4Q9UPT8 BID-204ENST00000399767 2129 ntTSL 2 BASIC21.8■■□□□ 1.08
ZC3H4Q9UPT8 FAM221A-202ENST00000409192 888 ntTSL 1 (best) BASIC21.8■■□□□ 1.08
ZC3H4Q9UPT8 NKIRAS1-204ENST00000416026 795 ntAPPRIS P2 TSL 3 BASIC21.8■■□□□ 1.08
ZC3H4Q9UPT8 LINC01336-202ENST00000506086 479 ntTSL 5 BASIC21.8■■□□□ 1.08
ZC3H4Q9UPT8 MRVI1-AS1-203ENST00000529979 784 ntTSL 3 BASIC21.8■■□□□ 1.08
ZC3H4Q9UPT8 TRMT112-202ENST00000535126 704 ntTSL 2 BASIC21.8■■□□□ 1.08
ZC3H4Q9UPT8 AL359317.2-203ENST00000557409 538 ntTSL 4 BASIC21.8■■□□□ 1.08
ZC3H4Q9UPT8 ZFPM1-203ENST00000562437 502 ntTSL 2 BASIC21.8■■□□□ 1.08
ZC3H4Q9UPT8 DCTPP1-204ENST00000568434 853 ntTSL 2 BASIC21.8■■□□□ 1.08
ZC3H4Q9UPT8 AC004771.3-201ENST00000574260 551 ntTSL 4 BASIC21.8■■□□□ 1.08
ZC3H4Q9UPT8 RAB3D-202ENST00000589655 924 ntAPPRIS P1 TSL 2 BASIC21.8■■□□□ 1.08
ZC3H4Q9UPT8 AC093512.1-201ENST00000617969 520 ntBASIC21.8■■□□□ 1.08
ZC3H4Q9UPT8 AL589182.2-201ENST00000619332 1049 ntBASIC21.8■■□□□ 1.08
ZC3H4Q9UPT8 UBE2I-207ENST00000406620 1842 ntAPPRIS P1 TSL 2 BASIC21.79■■□□□ 1.08
ZC3H4Q9UPT8 GALNT10-202ENST00000377661 3778 ntTSL 5 BASIC21.79■■□□□ 1.08
ZC3H4Q9UPT8 NFIL3-201ENST00000297689 2085 ntAPPRIS P1 TSL 1 (best) BASIC21.79■■□□□ 1.08
ZC3H4Q9UPT8 DTX2-212ENST00000446820 1770 ntAPPRIS ALT2 TSL 1 (best) BASIC21.79■■□□□ 1.08
ZC3H4Q9UPT8 MRFAP1-201ENST00000320912 2049 ntAPPRIS P1 TSL 2 BASIC21.79■■□□□ 1.08
ZC3H4Q9UPT8 SEMA6B-202ENST00000586965 2034 ntAPPRIS ALT2 TSL 1 (best) BASIC21.79■■□□□ 1.08
ZC3H4Q9UPT8 DOK7-206ENST00000515886 2263 ntTSL 2 BASIC21.79■■□□□ 1.08
ZC3H4Q9UPT8 COPS8-202ENST00000392008 1654 ntTSL 2 BASIC21.79■■□□□ 1.08
ZC3H4Q9UPT8 OGFOD2-211ENST00000538628 1696 ntTSL 1 (best) BASIC21.79■■□□□ 1.08
ZC3H4Q9UPT8 NR1H2-210ENST00000598168 1915 ntAPPRIS ALT2 TSL 5 BASIC21.79■■□□□ 1.08
ZC3H4Q9UPT8 CNR1-203ENST00000369501 6031 ntAPPRIS P1 TSL 1 (best) BASIC21.79■■□□□ 1.08
ZC3H4Q9UPT8 MARK2-208ENST00000508192 2924 ntAPPRIS P3 TSL 5 BASIC21.79■■□□□ 1.08
ZC3H4Q9UPT8 BDKRB2-201ENST00000539359 1600 ntTSL 2 BASIC21.79■■□□□ 1.08
ZC3H4Q9UPT8 CAPZB-202ENST00000264203 2068 ntTSL 2 BASIC21.79■■□□□ 1.08
ZC3H4Q9UPT8 NGEF-202ENST00000373552 2286 ntAPPRIS P1 TSL 2 BASIC21.79■■□□□ 1.08
ZC3H4Q9UPT8 TRPV6-209ENST00000638686 2298 ntAPPRIS P2 TSL 1 (best) BASIC21.79■■□□□ 1.08
ZC3H4Q9UPT8 LEXM-201ENST00000358193 1777 ntAPPRIS P3 TSL 1 (best) BASIC21.79■■□□□ 1.08
ZC3H4Q9UPT8 RAB34-204ENST00000395245 1766 ntAPPRIS P1 TSL 1 (best) BASIC21.79■■□□□ 1.08
ZC3H4Q9UPT8 CACNA1B-201ENST00000277549 7158 ntAPPRIS ALT2 TSL 1 (best) BASIC21.79■■□□□ 1.08
ZC3H4Q9UPT8 CACNA1B-202ENST00000277551 7158 ntAPPRIS ALT2 TSL 5 BASIC21.79■■□□□ 1.08
ZC3H4Q9UPT8 ALG3-201ENST00000397676 1528 ntAPPRIS P1 TSL 1 (best) BASIC21.79■■□□□ 1.08
ZC3H4Q9UPT8 STOM-202ENST00000347359 870 ntTSL 2 BASIC21.79■■□□□ 1.08
ZC3H4Q9UPT8 COLEC11-202ENST00000349077 1259 ntAPPRIS P1 TSL 1 (best) BASIC21.79■■□□□ 1.08
ZC3H4Q9UPT8 ARRB2-203ENST00000381488 1236 ntTSL 2 BASIC21.79■■□□□ 1.08
ZC3H4Q9UPT8 SNHG11-204ENST00000420006 720 ntTSL 3 BASIC21.79■■□□□ 1.08
ZC3H4Q9UPT8 AC006042.2-201ENST00000428660 568 ntTSL 4 BASIC21.79■■□□□ 1.08
ZC3H4Q9UPT8 SNHG11-206ENST00000432153 1181 ntTSL 3 BASIC21.79■■□□□ 1.08
ZC3H4Q9UPT8 LINC01481-203ENST00000549651 883 ntTSL 2 BASIC21.79■■□□□ 1.08
ZC3H4Q9UPT8 AL031432.2-201ENST00000566714 459 ntBASIC21.79■■□□□ 1.08
ZC3H4Q9UPT8 AL928711.1-201ENST00000570165 459 ntBASIC21.79■■□□□ 1.08
ZC3H4Q9UPT8 AC011498.3-201ENST00000590159 569 ntTSL 4 BASIC21.79■■□□□ 1.08
ZC3H4Q9UPT8 GPSM3-206ENST00000375040 1476 ntAPPRIS P1 TSL 1 (best) BASIC21.78■■□□□ 1.08
ZC3H4Q9UPT8 STX11-201ENST00000367568 1926 ntAPPRIS P1 TSL 1 (best) BASIC21.78■■□□□ 1.08
ZC3H4Q9UPT8 SUMO3-204ENST00000411651 1921 ntTSL 2 BASIC21.78■■□□□ 1.08
ZC3H4Q9UPT8 HEIH-201ENST00000623091 1652 ntBASIC21.78■■□□□ 1.08
ZC3H4Q9UPT8 TRIM58-201ENST00000366481 3225 ntAPPRIS P1 TSL 1 (best) BASIC21.78■■□□□ 1.08
ZC3H4Q9UPT8 CDO1-201ENST00000250535 1860 ntAPPRIS P1 TSL 1 (best) BASIC21.78■■□□□ 1.08
ZC3H4Q9UPT8 LGR4-202ENST00000389858 5163 ntTSL 1 (best) BASIC21.78■■□□□ 1.08
ZC3H4Q9UPT8 FAM110A-201ENST00000246100 1619 ntAPPRIS P1 TSL 1 (best) BASIC21.78■■□□□ 1.08
ZC3H4Q9UPT8 CRMP1-201ENST00000324989 3146 ntTSL 1 (best) BASIC21.78■■□□□ 1.08
ZC3H4Q9UPT8 GRB14-201ENST00000263915 2382 ntAPPRIS P1 TSL 1 (best) BASIC21.78■■□□□ 1.08
ZC3H4Q9UPT8 GCOM1-201ENST00000380568 1516 ntAPPRIS ALT2 TSL 2 BASIC21.78■■□□□ 1.08
ZC3H4Q9UPT8 HMOX2-208ENST00000570646 2147 ntAPPRIS P1 TSL 1 (best) BASIC21.78■■□□□ 1.08
ZC3H4Q9UPT8 HIST1H3D-201ENST00000356476 411 ntAPPRIS P1 BASIC21.78■■□□□ 1.08
ZC3H4Q9UPT8 GPX7-201ENST00000361314 1228 ntAPPRIS P1 TSL 1 (best) BASIC21.78■■□□□ 1.08
ZC3H4Q9UPT8 RFXANK-203ENST00000407360 1212 ntAPPRIS P1 TSL 1 (best) BASIC21.78■■□□□ 1.08
ZC3H4Q9UPT8 AP000695.1-201ENST00000429588 893 ntTSL 3 BASIC21.78■■□□□ 1.08
ZC3H4Q9UPT8 MAL2-202ENST00000531508 892 ntTSL 3 BASIC21.78■■□□□ 1.08
ZC3H4Q9UPT8 WDR25-203ENST00000542471 1214 ntTSL 1 (best) BASIC21.78■■□□□ 1.08
ZC3H4Q9UPT8 COX14-202ENST00000548985 677 ntAPPRIS P1 TSL 2 BASIC21.78■■□□□ 1.08
ZC3H4Q9UPT8 AHSA1-208ENST00000555517 832 ntTSL 2 BASIC21.78■■□□□ 1.08
ZC3H4Q9UPT8 PDPK2P-202ENST00000562415 1191 ntBASIC21.78■■□□□ 1.08
ZC3H4Q9UPT8 MIR4745-201ENST00000577608 62 ntBASIC21.78■■□□□ 1.08
ZC3H4Q9UPT8 LINC01586-201ENST00000506090 1840 ntTSL 2 BASIC21.77■■□□□ 1.08
ZC3H4Q9UPT8 AMHR2-202ENST00000379791 1437 ntTSL 1 (best) BASIC21.77■■□□□ 1.08
ZC3H4Q9UPT8 DMRT2-205ENST00000382255 2367 ntTSL 1 (best) BASIC21.77■■□□□ 1.08
ZC3H4Q9UPT8 TTC7A-201ENST00000319190 5157 ntAPPRIS P1 TSL 2 BASIC21.77■■□□□ 1.08
ZC3H4Q9UPT8 FP475955.4-201ENST00000623131 1990 ntBASIC21.77■■□□□ 1.08
ZC3H4Q9UPT8 ATP6V1G2-205ENST00000303892 1588 ntAPPRIS P1 TSL 1 (best) BASIC21.77■■□□□ 1.08
ZC3H4Q9UPT8 TMEM214-203ENST00000404032 2830 ntTSL 2 BASIC21.77■■□□□ 1.08
ZC3H4Q9UPT8 HDHD5-201ENST00000155674 1735 ntAPPRIS P3 TSL 1 (best) BASIC21.77■■□□□ 1.08
ZC3H4Q9UPT8 JKAMP-201ENST00000261247 1726 ntAPPRIS P1 TSL 1 (best) BASIC21.77■■□□□ 1.08
ZC3H4Q9UPT8 AC063926.2-201ENST00000623766 1308 ntBASIC21.77■■□□□ 1.08
ZC3H4Q9UPT8 AC055811.2-201ENST00000427497 1693 ntAPPRIS P1 TSL 1 (best) BASIC21.77■■□□□ 1.08
ZC3H4Q9UPT8 GLB1-202ENST00000307377 2018 ntTSL 1 (best) BASIC21.77■■□□□ 1.08
ZC3H4Q9UPT8 PAX1-201ENST00000398485 2838 ntAPPRIS P3 TSL 5 BASIC21.77■■□□□ 1.08
ZC3H4Q9UPT8 OPRK1-202ENST00000520287 1602 ntAPPRIS P1 TSL 1 (best) BASIC21.77■■□□□ 1.08
ZC3H4Q9UPT8 HMGN4-201ENST00000377575 1225 ntAPPRIS P1 TSL 1 (best) BASIC21.77■■□□□ 1.07
ZC3H4Q9UPT8 ARHGAP11B-201ENST00000428041 1017 ntAPPRIS P1 TSL 1 (best) BASIC21.77■■□□□ 1.07
ZC3H4Q9UPT8 LINC01786-201ENST00000434139 268 ntTSL 5 BASIC21.77■■□□□ 1.07
ZC3H4Q9UPT8 RAD51D-205ENST00000460118 1064 ntTSL 5 BASIC21.77■■□□□ 1.07
ZC3H4Q9UPT8 RBM7-207ENST00000544582 692 ntTSL 3 BASIC21.77■■□□□ 1.07
ZC3H4Q9UPT8 TMEM263-206ENST00000550344 925 ntAPPRIS P1 TSL 2 BASIC21.77■■□□□ 1.07
ZC3H4Q9UPT8 AC018845.2-201ENST00000568326 409 ntBASIC21.77■■□□□ 1.07
ZC3H4Q9UPT8 AL035252.4-201ENST00000624174 288 ntBASIC21.77■■□□□ 1.07
ZC3H4Q9UPT8 AC244517.11-201ENST00000624192 573 ntTSL 5 BASIC21.77■■□□□ 1.07
ZC3H4Q9UPT8 ZNF420-201ENST00000304239 1945 ntTSL 2 BASIC21.77■■□□□ 1.07
ZC3H4Q9UPT8 MOK-201ENST00000361847 1940 ntAPPRIS P3 TSL 1 (best) BASIC21.77■■□□□ 1.07
ZC3H4Q9UPT8 TCF3P1-201ENST00000423021 1937 ntBASIC21.77■■□□□ 1.07
ZC3H4Q9UPT8 MAGI2-212ENST00000626691 4599 ntTSL 5 BASIC21.76■■□□□ 1.07
ZC3H4Q9UPT8 LARP4-210ENST00000522085 1577 ntTSL 2 BASIC21.76■■□□□ 1.07
Retrieved 100 of 98,524 protein–RNA pairs in 43.7 ms