Protein–RNA interactions for Protein: Q8NF91

SYNE1, Nesprin-1, humanhuman

Known RBP Predictions only

Length 8,797 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE1Q8NF91 CDC42EP3-201ENST00000295324 5700 ntAPPRIS P1 TSL 1 (best) BASIC5.6□□□□□ -1.51
SYNE1Q8NF91 CCDC117-205ENST00000448492 3937 ntTSL 2 BASIC5.6□□□□□ -1.51
SYNE1Q8NF91 GUCA1A-201ENST00000053469 1874 ntAPPRIS P1 TSL 1 (best) BASIC5.6□□□□□ -1.51
SYNE1Q8NF91 TTTY14-203ENST00000447937 920 ntTSL 3 BASIC5.6□□□□□ -1.51
SYNE1Q8NF91 C1orf109-203ENST00000464085 919 ntAPPRIS P1 TSL 2 BASIC5.6□□□□□ -1.51
SYNE1Q8NF91 L34079.3-201ENST00000600242 546 ntTSL 4 BASIC5.6□□□□□ -1.51
SYNE1Q8NF91 CCNC-219ENST00000627680 896 ntTSL 5 BASIC5.6□□□□□ -1.51
SYNE1Q8NF91 KCNC2-204ENST00000540018 2168 ntAPPRIS ALT2 TSL 2 BASIC5.6□□□□□ -1.51
SYNE1Q8NF91 GAS2L1-210ENST00000621062 2483 ntAPPRIS P1 TSL 1 (best) BASIC5.6□□□□□ -1.51
SYNE1Q8NF91 LRRC61-201ENST00000323078 1684 ntAPPRIS P1 TSL 1 (best) BASIC5.6□□□□□ -1.51
SYNE1Q8NF91 RHBDF1-201ENST00000262316 2992 ntAPPRIS P1 TSL 1 (best) BASIC5.6□□□□□ -1.51
SYNE1Q8NF91 ADAD1-202ENST00000388724 1912 ntTSL 1 (best) BASIC5.6□□□□□ -1.51
SYNE1Q8NF91 ADAP1-217ENST00000611167 2118 ntTSL 5 BASIC5.6□□□□□ -1.51
SYNE1Q8NF91 SPAG16-204ENST00000413312 2258 ntTSL 5 BASIC5.6□□□□□ -1.51
SYNE1Q8NF91 SFI1-209ENST00000443011 3579 ntTSL 5 BASIC5.6□□□□□ -1.51
SYNE1Q8NF91 AC015961.2-201ENST00000589281 701 ntTSL 3 BASIC5.6□□□□□ -1.51
SYNE1Q8NF91 AC024563.2-201ENST00000603282 481 ntBASIC5.6□□□□□ -1.51
SYNE1Q8NF91 ARID3C-201ENST00000378909 1411 ntAPPRIS P1 TSL 2 BASIC5.6□□□□□ -1.51
SYNE1Q8NF91 MYOZ3-203ENST00000517768 1451 ntAPPRIS P1 TSL 1 (best) BASIC5.6□□□□□ -1.51
SYNE1Q8NF91 TMEM91-210ENST00000542945 1610 ntTSL 2 BASIC5.6□□□□□ -1.51
SYNE1Q8NF91 IRAK3-202ENST00000457197 1853 ntTSL 2 BASIC5.6□□□□□ -1.51
SYNE1Q8NF91 STARD3-201ENST00000336308 2132 ntAPPRIS P1 TSL 1 (best) BASIC5.6□□□□□ -1.51
SYNE1Q8NF91 P2RY6-212ENST00000618468 2431 ntAPPRIS P1 TSL 3 BASIC5.6□□□□□ -1.51
SYNE1Q8NF91 ZSCAN18-201ENST00000240727 2779 ntAPPRIS P3 TSL 1 (best) BASIC5.6□□□□□ -1.51
SYNE1Q8NF91 NSUN2-201ENST00000264670 3303 ntAPPRIS P3 TSL 1 (best) BASIC5.59□□□□□ -1.51
SYNE1Q8NF91 SCARF1-202ENST00000348987 2619 ntTSL 1 (best) BASIC5.59□□□□□ -1.51
SYNE1Q8NF91 DOK1-201ENST00000233668 2555 ntAPPRIS P1 TSL 1 (best) BASIC5.59□□□□□ -1.51
SYNE1Q8NF91 TOM1L1-202ENST00000445275 2228 ntTSL 2 BASIC5.59□□□□□ -1.51
SYNE1Q8NF91 MAFG-AS1-201ENST00000582106 1895 ntTSL 1 (best) BASIC5.59□□□□□ -1.51
SYNE1Q8NF91 ACBD5-201ENST00000375888 1747 ntAPPRIS ALT2 TSL 5 BASIC5.59□□□□□ -1.51
SYNE1Q8NF91 ARF6-201ENST00000298316 3865 ntAPPRIS P1 TSL 1 (best) BASIC5.59□□□□□ -1.51
SYNE1Q8NF91 AC069368.1-202ENST00000437723 750 ntAPPRIS P1 TSL 5 BASIC5.59□□□□□ -1.51
SYNE1Q8NF91 VEGFA-222ENST00000520948 1199 ntTSL 1 (best) BASIC5.59□□□□□ -1.51
SYNE1Q8NF91 AL121912.1-201ENST00000603683 238 ntBASIC5.59□□□□□ -1.51
SYNE1Q8NF91 AL592071.1-201ENST00000611956 408 ntBASIC5.59□□□□□ -1.51
SYNE1Q8NF91 NDUFA6-204ENST00000617763 1183 ntTSL 1 (best) BASIC5.59□□□□□ -1.51
SYNE1Q8NF91 CD24-206ENST00000620405 586 ntAPPRIS ALT2 TSL 2 BASIC5.59□□□□□ -1.51
SYNE1Q8NF91 GALNT10-201ENST00000297107 5961 ntAPPRIS P1 TSL 1 (best) BASIC5.59□□□□□ -1.51
SYNE1Q8NF91 BBS5-201ENST00000295240 3475 ntAPPRIS P1 TSL 1 (best) BASIC5.59□□□□□ -1.51
SYNE1Q8NF91 B3GALT5-206ENST00000615480 2617 ntAPPRIS P1 TSL 2 BASIC5.59□□□□□ -1.51
SYNE1Q8NF91 ZNF211-204ENST00000347302 2472 ntAPPRIS ALT2 TSL 1 (best) BASIC5.59□□□□□ -1.51
SYNE1Q8NF91 STMN3-201ENST00000370053 2255 ntAPPRIS P1 TSL 1 (best) BASIC5.59□□□□□ -1.51
SYNE1Q8NF91 CASC2-205ENST00000454781 2216 ntTSL 1 (best) BASIC5.59□□□□□ -1.51
SYNE1Q8NF91 ADAP1-218ENST00000617043 1946 ntTSL 2 BASIC5.59□□□□□ -1.51
SYNE1Q8NF91 KIF1BP-201ENST00000361983 2544 ntAPPRIS P1 TSL 1 (best) BASIC5.59□□□□□ -1.51
SYNE1Q8NF91 CFC1-203ENST00000621673 1444 ntTSL 2 BASIC5.59□□□□□ -1.51
SYNE1Q8NF91 SERPINH1-215ENST00000533603 2299 ntAPPRIS P1 TSL 2 BASIC5.59□□□□□ -1.51
SYNE1Q8NF91 NFIB-201ENST00000380921 1274 ntTSL 1 (best) BASIC5.59□□□□□ -1.51
SYNE1Q8NF91 POM121L3P-201ENST00000419331 1163 ntBASIC5.59□□□□□ -1.51
SYNE1Q8NF91 LINC01534-202ENST00000433232 554 ntTSL 3 BASIC5.59□□□□□ -1.51
SYNE1Q8NF91 ARSK-202ENST00000504763 1088 ntTSL 1 (best) BASIC5.59□□□□□ -1.51
SYNE1Q8NF91 CALM1-205ENST00000553542 877 ntTSL 5 BASIC5.59□□□□□ -1.51
SYNE1Q8NF91 LINC02317-201ENST00000555413 426 ntTSL 3 BASIC5.59□□□□□ -1.51
SYNE1Q8NF91 AC104532.1-201ENST00000588891 580 ntAPPRIS P1 TSL 4 BASIC5.59□□□□□ -1.51
SYNE1Q8NF91 TXNL4A-211ENST00000592837 611 ntTSL 2 BASIC5.59□□□□□ -1.51
SYNE1Q8NF91 CYP2E1-205ENST00000463117 1912 ntAPPRIS P1 TSL 5 BASIC5.59□□□□□ -1.51
SYNE1Q8NF91 SUMF2-201ENST00000275607 1894 ntTSL 1 (best) BASIC5.59□□□□□ -1.51
SYNE1Q8NF91 ISYNA1-206ENST00000578963 1691 ntTSL 1 (best) BASIC5.59□□□□□ -1.51
SYNE1Q8NF91 DLK2-203ENST00000372488 1590 ntAPPRIS P3 TSL 1 (best) BASIC5.59□□□□□ -1.51
SYNE1Q8NF91 L3HYPDH-201ENST00000247194 1527 ntAPPRIS P1 TSL 1 (best) BASIC5.59□□□□□ -1.51
SYNE1Q8NF91 MRFAP1-201ENST00000320912 2049 ntAPPRIS P1 TSL 2 BASIC5.59□□□□□ -1.51
SYNE1Q8NF91 AP2M1-201ENST00000292807 1931 ntAPPRIS P4 TSL 5 BASIC5.59□□□□□ -1.51
SYNE1Q8NF91 UBC-206ENST00000538617 1303 ntTSL 5 BASIC5.59□□□□□ -1.51
SYNE1Q8NF91 C18orf25-204ENST00000615553 2329 ntTSL 5 BASIC5.59□□□□□ -1.51
SYNE1Q8NF91 RWDD3-202ENST00000370202 1235 ntAPPRIS P1 TSL 3 BASIC5.59□□□□□ -1.51
SYNE1Q8NF91 UFSP1-201ENST00000388761 996 ntAPPRIS P1 BASIC5.59□□□□□ -1.51
SYNE1Q8NF91 AL137026.1-202ENST00000452578 1089 ntTSL 2 BASIC5.59□□□□□ -1.51
SYNE1Q8NF91 FICD-205ENST00000552758 603 ntTSL 2 BASIC5.59□□□□□ -1.51
SYNE1Q8NF91 ANAPC11-204ENST00000571024 668 ntAPPRIS P1 TSL 1 (best) BASIC5.59□□□□□ -1.51
SYNE1Q8NF91 ANAPC11-218ENST00000582222 523 ntTSL 2 BASIC5.59□□□□□ -1.51
SYNE1Q8NF91 AC092329.2-201ENST00000598402 547 ntBASIC5.59□□□□□ -1.51
SYNE1Q8NF91 SCRN2-202ENST00000407215 1779 ntTSL 1 (best) BASIC5.59□□□□□ -1.51
SYNE1Q8NF91 DDX59-201ENST00000331314 2289 ntAPPRIS P1 TSL 1 (best) BASIC5.59□□□□□ -1.51
SYNE1Q8NF91 CFAP77-203ENST00000393216 1638 ntAPPRIS ALT2 TSL 1 (best) BASIC5.59□□□□□ -1.51
SYNE1Q8NF91 AL365232.1-201ENST00000423730 1636 ntAPPRIS P1 TSL 5 BASIC5.59□□□□□ -1.51
SYNE1Q8NF91 HAUS4-218ENST00000555986 1626 ntTSL 5 BASIC5.59□□□□□ -1.51
SYNE1Q8NF91 MAP7-207ENST00000616617 4326 ntAPPRIS ALT2 TSL 5 BASIC5.59□□□□□ -1.51
SYNE1Q8NF91 MFSD1-201ENST00000264266 1594 ntAPPRIS P1 TSL 1 (best) BASIC5.59□□□□□ -1.51
SYNE1Q8NF91 SRPK1-204ENST00000373825 4592 ntAPPRIS P1 TSL 1 (best) BASIC5.59□□□□□ -1.51
SYNE1Q8NF91 KCNC4-204ENST00000438661 2953 ntAPPRIS ALT2 TSL 1 (best) BASIC5.59□□□□□ -1.51
SYNE1Q8NF91 ITGBL1-202ENST00000376180 2494 ntAPPRIS P1 TSL 1 (best) BASIC5.59□□□□□ -1.51
SYNE1Q8NF91 IKBKG-214ENST00000618670 2069 ntTSL 1 (best) BASIC5.59□□□□□ -1.51
SYNE1Q8NF91 ITPK1-202ENST00000354313 2803 ntTSL 1 (best) BASIC5.59□□□□□ -1.51
SYNE1Q8NF91 MFGE8-203ENST00000542878 1172 ntTSL 2 BASIC5.59□□□□□ -1.51
SYNE1Q8NF91 IGHV3OR16-7-201ENST00000604106 360 ntBASIC5.59□□□□□ -1.51
SYNE1Q8NF91 SLC38A10-201ENST00000288439 2708 ntAPPRIS P3 TSL 1 (best) BASIC5.59□□□□□ -1.51
SYNE1Q8NF91 Z83836.1-201ENST00000624605 1642 ntBASIC5.59□□□□□ -1.51
SYNE1Q8NF91 PCID2-202ENST00000337344 1898 ntAPPRIS P1 TSL 2 BASIC5.59□□□□□ -1.51
SYNE1Q8NF91 CCDC63-202ENST00000545036 1887 ntAPPRIS ALT2 TSL 2 BASIC5.59□□□□□ -1.51
SYNE1Q8NF91 MYC-205ENST00000524013 2150 ntAPPRIS ALT1 TSL 1 (best) BASIC5.59□□□□□ -1.51
SYNE1Q8NF91 CCNJ-202ENST00000403870 2830 ntTSL 5 BASIC5.59□□□□□ -1.51
SYNE1Q8NF91 HACE1-202ENST00000369125 3102 ntTSL 2 BASIC5.59□□□□□ -1.51
SYNE1Q8NF91 ADORA2A-214ENST00000611543 2412 ntAPPRIS P1 TSL 5 BASIC5.59□□□□□ -1.51
SYNE1Q8NF91 ACOT4-201ENST00000326303 2362 ntAPPRIS P1 TSL 1 (best) BASIC5.59□□□□□ -1.51
SYNE1Q8NF91 ONECUT3-201ENST00000382349 8318 ntAPPRIS P1 TSL 5 BASIC5.59□□□□□ -1.51
SYNE1Q8NF91 MOGS-205ENST00000452063 2568 ntAPPRIS ALT2 TSL 1 (best) BASIC5.59□□□□□ -1.51
SYNE1Q8NF91 THOP1-202ENST00000395212 1877 ntTSL 2 BASIC5.59□□□□□ -1.51
SYNE1Q8NF91 PDIA2-202ENST00000404312 1575 ntAPPRIS ALT2 TSL 5 BASIC5.59□□□□□ -1.51
SYNE1Q8NF91 IGF2-207ENST00000434045 1583 ntTSL 1 (best) BASIC5.59□□□□□ -1.51
SYNE1Q8NF91 FA2H-201ENST00000219368 2424 ntAPPRIS P1 TSL 1 (best) BASIC5.59□□□□□ -1.51
Retrieved 100 of 98,524 protein–RNA pairs in 31.6 ms