Protein–RNA interactions for Protein: Q7Z6J0

SH3RF1, E3 ubiquitin-protein ligase SH3RF1, humanhuman

Predictions only

Length 888 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SH3RF1Q7Z6J0 ASAP2-202ENST00000315273 5582 ntAPPRIS ALT2 TSL 1 (best) BASIC20.72■□□□□ 0.91
SH3RF1Q7Z6J0 NR4A2-204ENST00000409572 2878 ntAPPRIS P1 TSL 5 BASIC20.71■□□□□ 0.91
SH3RF1Q7Z6J0 TM2D2-201ENST00000397070 1631 ntTSL 1 (best) BASIC20.71■□□□□ 0.91
SH3RF1Q7Z6J0 SLC25A43-201ENST00000217909 2783 ntAPPRIS P1 TSL 1 (best) BASIC20.71■□□□□ 0.91
SH3RF1Q7Z6J0 NDUFB9-201ENST00000276689 711 ntAPPRIS P1 TSL 1 (best) BASIC20.71■□□□□ 0.91
SH3RF1Q7Z6J0 TRA2B-202ENST00000342294 288 ntTSL 1 (best) BASIC20.71■□□□□ 0.91
SH3RF1Q7Z6J0 CELA2A-201ENST00000359621 919 ntAPPRIS P1 TSL 1 (best) BASIC20.71■□□□□ 0.91
SH3RF1Q7Z6J0 SBDSP1-202ENST00000423945 618 ntTSL 3 BASIC20.71■□□□□ 0.91
SH3RF1Q7Z6J0 ABR-204ENST00000543210 1049 ntTSL 2 BASIC20.71■□□□□ 0.91
SH3RF1Q7Z6J0 LITAF-220ENST00000620789 692 ntTSL 5 BASIC20.71■□□□□ 0.91
SH3RF1Q7Z6J0 ELMOD1-202ENST00000443271 1990 ntAPPRIS P1 TSL 2 BASIC20.71■□□□□ 0.91
SH3RF1Q7Z6J0 CD19-202ENST00000538922 1957 ntAPPRIS ALT2 TSL 5 BASIC20.71■□□□□ 0.91
SH3RF1Q7Z6J0 SARAF-214ENST00000545648 1976 ntTSL 1 (best) BASIC20.71■□□□□ 0.91
SH3RF1Q7Z6J0 KCNK12-201ENST00000327876 6227 ntAPPRIS P1 TSL 1 (best) BASIC20.71■□□□□ 0.91
SH3RF1Q7Z6J0 GNA12-201ENST00000275364 4378 ntAPPRIS P1 TSL 1 (best) BASIC20.71■□□□□ 0.91
SH3RF1Q7Z6J0 A4GALT-201ENST00000249005 2020 ntAPPRIS P1 TSL 1 (best) BASIC20.71■□□□□ 0.91
SH3RF1Q7Z6J0 OPA3-202ENST00000323060 2250 ntAPPRIS ALT2 TSL 1 (best) BASIC20.71■□□□□ 0.91
SH3RF1Q7Z6J0 PXK-206ENST00000463280 2825 ntTSL 2 BASIC20.71■□□□□ 0.91
SH3RF1Q7Z6J0 HCG18-235ENST00000426882 4862 ntTSL 1 (best) BASIC20.71■□□□□ 0.91
SH3RF1Q7Z6J0 FLYWCH1P1-201ENST00000460917 1874 ntBASIC20.71■□□□□ 0.91
SH3RF1Q7Z6J0 BANP-223ENST00000538234 2372 ntAPPRIS P1 TSL 1 (best) BASIC20.71■□□□□ 0.91
SH3RF1Q7Z6J0 CENPT-215ENST00000564817 1638 ntAPPRIS ALT2 TSL 5 BASIC20.71■□□□□ 0.91
SH3RF1Q7Z6J0 AC233702.3-201ENST00000578656 1387 ntBASIC20.71■□□□□ 0.91
SH3RF1Q7Z6J0 DLGAP4-201ENST00000339266 5016 ntAPPRIS ALT2 TSL 5 BASIC20.7■□□□□ 0.91
SH3RF1Q7Z6J0 PLK3-201ENST00000372201 2492 ntAPPRIS P1 TSL 1 (best) BASIC20.7■□□□□ 0.9
SH3RF1Q7Z6J0 SEPT8-216ENST00000620483 4335 ntTSL 5 BASIC20.7■□□□□ 0.9
SH3RF1Q7Z6J0 AMDHD2-203ENST00000413459 2049 ntTSL 2 BASIC20.7■□□□□ 0.9
SH3RF1Q7Z6J0 MST1R-214ENST00000613534 2025 ntTSL 1 (best) BASIC20.7■□□□□ 0.9
SH3RF1Q7Z6J0 TADA3-202ENST00000343450 2554 ntTSL 1 (best) BASIC20.7■□□□□ 0.9
SH3RF1Q7Z6J0 TMPRSS9-205ENST00000613480 2568 ntTSL 1 (best) BASIC20.7■□□□□ 0.9
SH3RF1Q7Z6J0 AC005865.2-201ENST00000505276 2303 ntTSL 2 BASIC20.7■□□□□ 0.9
SH3RF1Q7Z6J0 NMRK1-203ENST00000376811 2050 ntTSL 2 BASIC20.7■□□□□ 0.9
SH3RF1Q7Z6J0 FAM53A-205ENST00000472884 2086 ntAPPRIS P1 TSL 1 (best) BASIC20.7■□□□□ 0.9
SH3RF1Q7Z6J0 AC127496.1-202ENST00000573602 2091 ntTSL 2 BASIC20.7■□□□□ 0.9
SH3RF1Q7Z6J0 HEXIM2-201ENST00000307275 1528 ntAPPRIS P1 TSL 2 BASIC20.7■□□□□ 0.9
SH3RF1Q7Z6J0 EGFL7-204ENST00000406555 1529 ntAPPRIS P1 TSL 1 (best) BASIC20.7■□□□□ 0.9
SH3RF1Q7Z6J0 EPB41L4B-201ENST00000374557 4006 ntAPPRIS ALT2 TSL 1 (best) BASIC20.7■□□□□ 0.9
SH3RF1Q7Z6J0 RALGPS1-208ENST00000424082 2362 ntTSL 2 BASIC20.7■□□□□ 0.9
SH3RF1Q7Z6J0 IGF2-202ENST00000381392 1005 ntAPPRIS ALT1 TSL 1 (best) BASIC20.7■□□□□ 0.9
SH3RF1Q7Z6J0 VKORC1-205ENST00000394975 1012 ntAPPRIS P1 TSL 1 (best) BASIC20.7■□□□□ 0.9
SH3RF1Q7Z6J0 MCFD2-208ENST00000409973 821 ntAPPRIS P1 TSL 2 BASIC20.7■□□□□ 0.9
SH3RF1Q7Z6J0 PMS2P1-201ENST00000431037 1228 ntBASIC20.7■□□□□ 0.9
SH3RF1Q7Z6J0 AL445472.1-201ENST00000452532 1007 ntTSL 2 BASIC20.7■□□□□ 0.9
SH3RF1Q7Z6J0 AC010226.1-202ENST00000508517 539 ntTSL 2 BASIC20.7■□□□□ 0.9
SH3RF1Q7Z6J0 RNA5SP419-201ENST00000515908 135 ntBASIC20.7■□□□□ 0.9
SH3RF1Q7Z6J0 SLC25A1P1-201ENST00000528351 927 ntBASIC20.7■□□□□ 0.9
SH3RF1Q7Z6J0 MRPL52-215ENST00000556840 398 ntTSL 2 BASIC20.7■□□□□ 0.9
SH3RF1Q7Z6J0 AC005332.3-201ENST00000589904 676 ntBASIC20.7■□□□□ 0.9
SH3RF1Q7Z6J0 NDUFA6-204ENST00000617763 1183 ntTSL 1 (best) BASIC20.7■□□□□ 0.9
SH3RF1Q7Z6J0 TFEB-206ENST00000403298 2162 ntAPPRIS P1 TSL 5 BASIC20.7■□□□□ 0.9
SH3RF1Q7Z6J0 PITHD1-201ENST00000246151 1603 ntAPPRIS P1 TSL 1 (best) BASIC20.7■□□□□ 0.9
SH3RF1Q7Z6J0 MRPL4-203ENST00000393733 1620 ntTSL 5 BASIC20.7■□□□□ 0.9
SH3RF1Q7Z6J0 PEPD-203ENST00000436370 1638 ntTSL 2 BASIC20.7■□□□□ 0.9
SH3RF1Q7Z6J0 SIGIRR-220ENST00000531205 1649 ntTSL 2 BASIC20.7■□□□□ 0.9
SH3RF1Q7Z6J0 RPS6KA2-201ENST00000265678 5824 ntAPPRIS P1 TSL 1 (best) BASIC20.7■□□□□ 0.9
SH3RF1Q7Z6J0 RBFADN-201ENST00000562391 1350 ntTSL 1 (best) BASIC20.7■□□□□ 0.9
SH3RF1Q7Z6J0 P2RY6-207ENST00000538328 1425 ntAPPRIS P1 TSL 3 BASIC20.7■□□□□ 0.9
SH3RF1Q7Z6J0 KCNC4-203ENST00000413138 3018 ntAPPRIS ALT2 TSL 5 BASIC20.7■□□□□ 0.9
SH3RF1Q7Z6J0 MCOLN1-201ENST00000264079 2082 ntAPPRIS P1 TSL 1 (best) BASIC20.69■□□□□ 0.9
SH3RF1Q7Z6J0 ADRA1A-205ENST00000380582 2089 ntTSL 1 (best) BASIC20.69■□□□□ 0.9
SH3RF1Q7Z6J0 TPD52L1-202ENST00000368388 2147 ntTSL 1 (best) BASIC20.69■□□□□ 0.9
SH3RF1Q7Z6J0 APBB1IP-201ENST00000356785 1513 ntTSL 1 (best) BASIC20.69■□□□□ 0.9
SH3RF1Q7Z6J0 BEGAIN-211ENST00000637646 2911 ntTSL 5 BASIC20.69■□□□□ 0.9
SH3RF1Q7Z6J0 AHCYL1-203ENST00000393614 4313 ntTSL 2 BASIC20.69■□□□□ 0.9
SH3RF1Q7Z6J0 VPS37B-201ENST00000267202 3028 ntAPPRIS P1 TSL 1 (best) BASIC20.69■□□□□ 0.9
SH3RF1Q7Z6J0 HTATSF1-204ENST00000535601 3019 ntAPPRIS P1 TSL 1 (best) BASIC20.69■□□□□ 0.9
SH3RF1Q7Z6J0 TBPL1-203ENST00000367871 808 ntTSL 2 BASIC20.69■□□□□ 0.9
SH3RF1Q7Z6J0 LINC01534-202ENST00000433232 554 ntTSL 3 BASIC20.69■□□□□ 0.9
SH3RF1Q7Z6J0 FIGNL1-207ENST00000435566 593 ntTSL 4 BASIC20.69■□□□□ 0.9
SH3RF1Q7Z6J0 PRSS21-202ENST00000450020 1106 ntTSL 1 (best) BASIC20.69■□□□□ 0.9
SH3RF1Q7Z6J0 AC139887.2-202ENST00000507446 534 ntTSL 4 BASIC20.69■□□□□ 0.9
SH3RF1Q7Z6J0 ZBED5-AS1-202ENST00000529014 771 ntTSL 5 BASIC20.69■□□□□ 0.9
SH3RF1Q7Z6J0 SAXO2-206ENST00000566205 340 ntAPPRIS ALT2 TSL 2 BASIC20.69■□□□□ 0.9
SH3RF1Q7Z6J0 ZNF688-207ENST00000567855 540 ntTSL 2 BASIC20.69■□□□□ 0.9
SH3RF1Q7Z6J0 AC007220.1-201ENST00000572466 1055 ntTSL 3 BASIC20.69■□□□□ 0.9
SH3RF1Q7Z6J0 IGHV3-41-201ENST00000613121 348 ntBASIC20.69■□□□□ 0.9
SH3RF1Q7Z6J0 IL9RP2-201ENST00000423948 1312 ntBASIC20.69■□□□□ 0.9
SH3RF1Q7Z6J0 SEPT2-208ENST00000407971 3267 ntTSL 5 BASIC20.69■□□□□ 0.9
SH3RF1Q7Z6J0 SPPL2C-201ENST00000329196 2238 ntAPPRIS P1 BASIC20.69■□□□□ 0.9
SH3RF1Q7Z6J0 CDK10-208ENST00000505473 1424 ntTSL 1 (best) BASIC20.69■□□□□ 0.9
SH3RF1Q7Z6J0 SLC44A3-201ENST00000271227 2388 ntAPPRIS P1 TSL 1 (best) BASIC20.68■□□□□ 0.9
SH3RF1Q7Z6J0 GAS7-210ENST00000579158 1528 ntTSL 1 (best) BASIC20.68■□□□□ 0.9
SH3RF1Q7Z6J0 C19orf57-208ENST00000591586 1559 ntAPPRIS ALT2 TSL 5 BASIC20.68■□□□□ 0.9
SH3RF1Q7Z6J0 MAEA-201ENST00000264750 2058 ntTSL 2 BASIC20.68■□□□□ 0.9
SH3RF1Q7Z6J0 DCLK1-203ENST00000379892 2101 ntTSL 5 BASIC20.68■□□□□ 0.9
SH3RF1Q7Z6J0 TTLL9-205ENST00000375938 2623 ntAPPRIS P2 TSL 2 BASIC20.68■□□□□ 0.9
SH3RF1Q7Z6J0 CD19-206ENST00000567541 1707 ntAPPRIS ALT2 TSL 1 (best) BASIC20.68■□□□□ 0.9
SH3RF1Q7Z6J0 PAQR4-202ENST00000318782 2793 ntAPPRIS P1 TSL 1 (best) BASIC20.68■□□□□ 0.9
SH3RF1Q7Z6J0 OLFM1-207ENST00000371801 568 ntTSL 2 BASIC20.68■□□□□ 0.9
SH3RF1Q7Z6J0 AC064807.1-202ENST00000423716 936 ntTSL 2 BASIC20.68■□□□□ 0.9
SH3RF1Q7Z6J0 AC034213.1-201ENST00000507681 806 ntTSL 3 BASIC20.68■□□□□ 0.9
SH3RF1Q7Z6J0 AF238378.1-201ENST00000526806 358 ntBASIC20.68■□□□□ 0.9
SH3RF1Q7Z6J0 C19orf25-204ENST00000586564 1265 ntAPPRIS P1 TSL 3 BASIC20.68■□□□□ 0.9
SH3RF1Q7Z6J0 TP73-AS1-207ENST00000624167 988 ntBASIC20.68■□□□□ 0.9
SH3RF1Q7Z6J0 MCRIP2-211ENST00000629534 341 ntTSL 2 BASIC20.68■□□□□ 0.9
SH3RF1Q7Z6J0 RPL3-201ENST00000216146 1442 ntAPPRIS P1 TSL 1 (best) BASIC20.68■□□□□ 0.9
SH3RF1Q7Z6J0 ACTN4-202ENST00000390009 2102 ntTSL 1 (best) BASIC20.68■□□□□ 0.9
SH3RF1Q7Z6J0 MRAS-204ENST00000464896 1534 ntTSL 2 BASIC20.68■□□□□ 0.9
SH3RF1Q7Z6J0 SCOC-208ENST00000510586 2193 ntAPPRIS ALT1 TSL 5 BASIC20.68■□□□□ 0.9
SH3RF1Q7Z6J0 LETM1P2-201ENST00000597330 2178 ntBASIC20.68■□□□□ 0.9
Retrieved 100 of 98,524 protein–RNA pairs in 20.8 ms