Protein–RNA interactions for Protein: Q91XZ7

Pcdhb3, Protocadherin beta 3, mousemouse

Predictions only

Length 784 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Pcdhb3Q91XZ7 Foxg1-201ENSMUST00000021333 2941 ntAPPRIS P1 TSL 1 (best) BASIC22.36■■□□□ 1.17
Pcdhb3Q91XZ7 Babam2-209ENSMUST00000201352 1888 ntAPPRIS P1 TSL 1 (best) BASIC22.35■■□□□ 1.17
Pcdhb3Q91XZ7 Mpzl1-202ENSMUST00000111435 2285 ntAPPRIS P1 TSL 1 (best) BASIC22.35■■□□□ 1.17
Pcdhb3Q91XZ7 Cops6-202ENSMUST00000110951 1098 ntAPPRIS ALT2 TSL 1 (best) BASIC22.35■■□□□ 1.17
Pcdhb3Q91XZ7 Dpysl3-201ENSMUST00000025379 2106 ntAPPRIS P1 TSL 1 (best) BASIC22.35■■□□□ 1.17
Pcdhb3Q91XZ7 Dtnb-210ENSMUST00000173199 2820 ntAPPRIS ALT2 TSL 5 BASIC22.35■■□□□ 1.17
Pcdhb3Q91XZ7 Gm26766-202ENSMUST00000227544 2347 ntBASIC22.35■■□□□ 1.17
Pcdhb3Q91XZ7 Dusp26-205ENSMUST00000170204 1627 ntAPPRIS P1 TSL 5 BASIC22.35■■□□□ 1.17
Pcdhb3Q91XZ7 Nelfe-201ENSMUST00000097343 1607 ntAPPRIS P1 TSL 5 BASIC22.35■■□□□ 1.17
Pcdhb3Q91XZ7 Ttc9-201ENSMUST00000036116 2042 ntAPPRIS P1 TSL 1 (best) BASIC22.35■■□□□ 1.17
Pcdhb3Q91XZ7 Fam3c-201ENSMUST00000081288 1487 ntTSL 1 (best) BASIC22.34■■□□□ 1.17
Pcdhb3Q91XZ7 Fam149b-203ENSMUST00000090499 2370 ntAPPRIS P4 TSL 1 (best) BASIC22.34■■□□□ 1.17
Pcdhb3Q91XZ7 A330041J22Rik-201ENSMUST00000150367 1825 ntTSL 1 (best) BASIC22.34■■□□□ 1.17
Pcdhb3Q91XZ7 Osbpl1a-209ENSMUST00000122175 1203 ntTSL 1 (best) BASIC22.34■■□□□ 1.17
Pcdhb3Q91XZ7 Lbx1-201ENSMUST00000099401 2484 ntAPPRIS P1 TSL 1 (best) BASIC22.34■■□□□ 1.17
Pcdhb3Q91XZ7 Ccdc112-201ENSMUST00000072835 2801 ntAPPRIS P1 TSL 5 BASIC22.34■■□□□ 1.17
Pcdhb3Q91XZ7 Usp39-201ENSMUST00000070345 2244 ntAPPRIS P1 TSL 1 (best) BASIC22.33■■□□□ 1.17
Pcdhb3Q91XZ7 Gm2018-201ENSMUST00000140754 478 ntTSL 2 BASIC22.33■■□□□ 1.17
Pcdhb3Q91XZ7 Gm31266-201ENSMUST00000192060 656 ntTSL 5 BASIC22.33■■□□□ 1.17
Pcdhb3Q91XZ7 P2rx2-205ENSMUST00000200037 1569 ntAPPRIS ALT2 TSL 1 (best) BASIC22.33■■□□□ 1.16
Pcdhb3Q91XZ7 Kcnk1-201ENSMUST00000046765 2235 ntAPPRIS P1 TSL 1 (best) BASIC22.33■■□□□ 1.16
Pcdhb3Q91XZ7 Smurf1-203ENSMUST00000110677 5420 ntTSL 5 BASIC22.32■■□□□ 1.16
Pcdhb3Q91XZ7 Kcnq5-205ENSMUST00000173058 2472 ntTSL 5 BASIC22.32■■□□□ 1.16
Pcdhb3Q91XZ7 Ube2i-206ENSMUST00000172618 1559 ntAPPRIS P1 TSL 1 (best) BASIC22.31■■□□□ 1.16
Pcdhb3Q91XZ7 Phf23-201ENSMUST00000018716 2006 ntAPPRIS P3 TSL 1 (best) BASIC22.31■■□□□ 1.16
Pcdhb3Q91XZ7 Pdss1-201ENSMUST00000053729 1642 ntAPPRIS P1 TSL 1 (best) BASIC22.31■■□□□ 1.16
Pcdhb3Q91XZ7 Gm5784-202ENSMUST00000220896 2016 ntTSL 1 (best) BASIC22.3■■□□□ 1.16
Pcdhb3Q91XZ7 Cadps-201ENSMUST00000067491 5421 ntAPPRIS P4 TSL 1 (best) BASIC22.3■■□□□ 1.16
Pcdhb3Q91XZ7 Gna13-202ENSMUST00000106702 914 ntTSL 1 (best) BASIC22.3■■□□□ 1.16
Pcdhb3Q91XZ7 Efcc1-201ENSMUST00000032132 2729 ntAPPRIS ALT2 TSL 5 BASIC22.3■■□□□ 1.16
Pcdhb3Q91XZ7 Wnt5b-203ENSMUST00000119369 2339 ntTSL 1 (best) BASIC22.3■■□□□ 1.16
Pcdhb3Q91XZ7 Usp12-201ENSMUST00000085614 4327 ntAPPRIS P1 TSL 1 (best) BASIC22.3■■□□□ 1.16
Pcdhb3Q91XZ7 Hlx-201ENSMUST00000048572 2278 ntAPPRIS P1 TSL 1 (best) BASIC22.29■■□□□ 1.16
Pcdhb3Q91XZ7 Hibadh-201ENSMUST00000031788 1825 ntAPPRIS P1 TSL 1 (best) BASIC22.29■■□□□ 1.16
Pcdhb3Q91XZ7 Gskip-202ENSMUST00000222284 1064 ntTSL 1 (best) BASIC22.29■■□□□ 1.16
Pcdhb3Q91XZ7 Gpr137c-205ENSMUST00000227009 771 ntAPPRIS ALT2 BASIC22.29■■□□□ 1.16
Pcdhb3Q91XZ7 Dnajb2-202ENSMUST00000082158 1253 ntAPPRIS P1 TSL 5 BASIC22.29■■□□□ 1.16
Pcdhb3Q91XZ7 Crls1-201ENSMUST00000028835 1924 ntAPPRIS P1 TSL 1 (best) BASIC22.29■■□□□ 1.16
Pcdhb3Q91XZ7 Slc35f5-201ENSMUST00000027580 2733 ntAPPRIS P1 TSL 1 (best) BASIC22.29■■□□□ 1.16
Pcdhb3Q91XZ7 Gm9887-201ENSMUST00000053451 624 ntAPPRIS P1 BASIC22.28■■□□□ 1.16
Pcdhb3Q91XZ7 Nkain2-201ENSMUST00000092602 558 ntBASIC22.28■■□□□ 1.16
Pcdhb3Q91XZ7 Ppp1r14c-201ENSMUST00000043374 2617 ntAPPRIS P1 TSL 1 (best) BASIC22.28■■□□□ 1.16
Pcdhb3Q91XZ7 Ppp4c-211ENSMUST00000206570 1400 ntAPPRIS P1 TSL 1 (best) BASIC22.28■■□□□ 1.16
Pcdhb3Q91XZ7 Zfp639-202ENSMUST00000191783 1988 ntAPPRIS P1 TSL 1 (best) BASIC22.28■■□□□ 1.16
Pcdhb3Q91XZ7 Capza2-201ENSMUST00000015877 2537 ntAPPRIS P1 TSL 1 (best) BASIC22.28■■□□□ 1.16
Pcdhb3Q91XZ7 Prph-202ENSMUST00000047104 1865 ntAPPRIS P3 TSL 1 (best) BASIC22.28■■□□□ 1.16
Pcdhb3Q91XZ7 Rhbdl1-201ENSMUST00000026831 1711 ntAPPRIS P1 TSL 1 (best) BASIC22.27■■□□□ 1.16
Pcdhb3Q91XZ7 Sft2d3-201ENSMUST00000054984 2810 ntAPPRIS P1 BASIC22.27■■□□□ 1.16
Pcdhb3Q91XZ7 Amigo1-201ENSMUST00000050909 5030 ntAPPRIS P1 TSL 1 (best) BASIC22.27■■□□□ 1.16
Pcdhb3Q91XZ7 Sys1-201ENSMUST00000072452 1606 ntAPPRIS P1 TSL 1 (best) BASIC22.27■■□□□ 1.16
Pcdhb3Q91XZ7 Bckdhb-201ENSMUST00000034801 1472 ntAPPRIS P3 TSL 1 (best) BASIC22.27■■□□□ 1.16
Pcdhb3Q91XZ7 AC164550.2-201ENSMUST00000219127 2086 ntTSL 5 BASIC22.26■■□□□ 1.15
Pcdhb3Q91XZ7 Gm5987-201ENSMUST00000196433 1151 ntBASIC22.26■■□□□ 1.15
Pcdhb3Q91XZ7 Endog-201ENSMUST00000015481 1063 ntAPPRIS P1 TSL 1 (best) BASIC22.25■■□□□ 1.15
Pcdhb3Q91XZ7 Kras-207ENSMUST00000203147 817 ntTSL 5 BASIC22.25■■□□□ 1.15
Pcdhb3Q91XZ7 AC163623.1-201ENSMUST00000213738 727 ntAPPRIS P1 TSL 3 BASIC22.25■■□□□ 1.15
Pcdhb3Q91XZ7 Gm42699-201ENSMUST00000198104 1657 ntBASIC22.25■■□□□ 1.15
Pcdhb3Q91XZ7 Zfp3-201ENSMUST00000060444 2061 ntAPPRIS P1 TSL 1 (best) BASIC22.25■■□□□ 1.15
Pcdhb3Q91XZ7 Peli3-201ENSMUST00000025834 1971 ntAPPRIS P1 TSL 1 (best) BASIC22.25■■□□□ 1.15
Pcdhb3Q91XZ7 Brsk1-201ENSMUST00000048248 2996 ntAPPRIS P1 TSL 1 (best) BASIC22.24■■□□□ 1.15
Pcdhb3Q91XZ7 Gm20402-201ENSMUST00000174738 687 ntTSL 3 BASIC22.24■■□□□ 1.15
Pcdhb3Q91XZ7 Tirap-205ENSMUST00000176685 1783 ntAPPRIS P1 TSL 1 (best) BASIC22.24■■□□□ 1.15
Pcdhb3Q91XZ7 Stradb-202ENSMUST00000114296 1348 ntTSL 1 (best) BASIC22.24■■□□□ 1.15
Pcdhb3Q91XZ7 Basp1-201ENSMUST00000058845 1855 ntAPPRIS P1 TSL 1 (best) BASIC22.24■■□□□ 1.15
Pcdhb3Q91XZ7 Fam149b-202ENSMUST00000051915 1981 ntAPPRIS ALT2 TSL 5 BASIC22.23■■□□□ 1.15
Pcdhb3Q91XZ7 D730045B01Rik-202ENSMUST00000186838 1543 ntTSL 1 (best) BASIC22.23■■□□□ 1.15
Pcdhb3Q91XZ7 Mageb3-201ENSMUST00000104936 2341 ntAPPRIS P1 BASIC22.23■■□□□ 1.15
Pcdhb3Q91XZ7 Srcap-210ENSMUST00000188124 2048 ntTSL 1 (best) BASIC22.23■■□□□ 1.15
Pcdhb3Q91XZ7 Pate2-201ENSMUST00000098906 1690 ntAPPRIS ALT2 TSL 2 BASIC22.22■■□□□ 1.15
Pcdhb3Q91XZ7 St7-209ENSMUST00000115420 2094 ntTSL 5 BASIC22.22■■□□□ 1.15
Pcdhb3Q91XZ7 Dennd5a-202ENSMUST00000106722 4862 ntTSL 1 (best) BASIC22.22■■□□□ 1.15
Pcdhb3Q91XZ7 Scarb1-202ENSMUST00000111390 2367 ntTSL 1 (best) BASIC22.21■■□□□ 1.15
Pcdhb3Q91XZ7 Trpc1-201ENSMUST00000053785 2912 ntAPPRIS ALT2 TSL 1 (best) BASIC22.21■■□□□ 1.15
Pcdhb3Q91XZ7 Barhl1-203ENSMUST00000113849 2102 ntAPPRIS P1 TSL 1 (best) BASIC22.21■■□□□ 1.15
Pcdhb3Q91XZ7 Dhrs13-201ENSMUST00000021187 1779 ntAPPRIS P1 TSL 1 (best) BASIC22.21■■□□□ 1.15
Pcdhb3Q91XZ7 Ccdc50-202ENSMUST00000096127 1096 ntTSL 1 (best) BASIC22.21■■□□□ 1.15
Pcdhb3Q91XZ7 Sos2-201ENSMUST00000035773 5607 ntAPPRIS P2 TSL 5 BASIC22.21■■□□□ 1.15
Pcdhb3Q91XZ7 Taf4-201ENSMUST00000041618 4416 ntAPPRIS P2 TSL 1 (best) BASIC22.21■■□□□ 1.15
Pcdhb3Q91XZ7 Ewsr1-205ENSMUST00000102930 2174 ntAPPRIS ALT2 TSL 5 BASIC22.21■■□□□ 1.15
Pcdhb3Q91XZ7 Lmo2-203ENSMUST00000111143 1654 ntTSL 1 (best) BASIC22.2■■□□□ 1.15
Pcdhb3Q91XZ7 Flot2-201ENSMUST00000072289 2621 ntAPPRIS P2 TSL 1 (best) BASIC22.2■■□□□ 1.14
Pcdhb3Q91XZ7 Gm6934-201ENSMUST00000194780 1905 ntBASIC22.2■■□□□ 1.14
Pcdhb3Q91XZ7 Guk1-204ENSMUST00000170202 1078 ntAPPRIS P1 TSL 1 (best) BASIC22.2■■□□□ 1.14
Pcdhb3Q91XZ7 Wtap-204ENSMUST00000159986 3187 ntTSL 1 (best) BASIC22.2■■□□□ 1.14
Pcdhb3Q91XZ7 Sdccag3-204ENSMUST00000114102 2193 ntAPPRIS P3 TSL 1 (best) BASIC22.19■■□□□ 1.14
Pcdhb3Q91XZ7 Glrx2-205ENSMUST00000145571 758 ntTSL 2 BASIC22.19■■□□□ 1.14
Pcdhb3Q91XZ7 Gm11529-201ENSMUST00000153012 639 ntTSL 1 (best) BASIC22.19■■□□□ 1.14
Pcdhb3Q91XZ7 P4htm-201ENSMUST00000006853 1841 ntAPPRIS P1 TSL 1 (best) BASIC22.19■■□□□ 1.14
Pcdhb3Q91XZ7 Gorasp2-205ENSMUST00000133432 1941 ntAPPRIS ALT2 TSL 1 (best) BASIC22.19■■□□□ 1.14
Pcdhb3Q91XZ7 Ccnd3-205ENSMUST00000182209 1977 ntAPPRIS P1 TSL 1 (best) BASIC22.19■■□□□ 1.14
Pcdhb3Q91XZ7 Arhgap9-204ENSMUST00000219511 2217 ntAPPRIS ALT2 TSL 1 (best) BASIC22.19■■□□□ 1.14
Pcdhb3Q91XZ7 Tcerg1l-201ENSMUST00000160436 2565 ntAPPRIS P1 TSL 5 BASIC22.19■■□□□ 1.14
Pcdhb3Q91XZ7 Set-201ENSMUST00000067996 2834 ntAPPRIS ALT2 TSL 1 (best) BASIC22.18■■□□□ 1.14
Pcdhb3Q91XZ7 Bean1-202ENSMUST00000164076 2423 ntAPPRIS ALT2 TSL 1 (best) BASIC22.18■■□□□ 1.14
Pcdhb3Q91XZ7 Dtnbp1-202ENSMUST00000110128 1305 ntAPPRIS ALT2 TSL 5 BASIC22.18■■□□□ 1.14
Pcdhb3Q91XZ7 Znrf2-201ENSMUST00000079869 5886 ntAPPRIS P1 TSL 1 (best) BASIC22.18■■□□□ 1.14
Pcdhb3Q91XZ7 Lgi2-201ENSMUST00000039750 6456 ntAPPRIS P3 TSL 1 (best) BASIC22.17■■□□□ 1.14
Pcdhb3Q91XZ7 Gm17110-201ENSMUST00000171248 735 ntTSL 3 BASIC22.17■■□□□ 1.14
Pcdhb3Q91XZ7 Anapc11-202ENSMUST00000093140 962 ntAPPRIS P1 TSL 1 (best) BASIC22.17■■□□□ 1.14
Pcdhb3Q91XZ7 Srsf12-201ENSMUST00000067864 2939 ntAPPRIS P1 TSL 1 (best) BASIC22.17■■□□□ 1.14
Retrieved 100 of 76,532 protein–RNA pairs in 53.1 ms