Protein–RNA interactions for Protein: Q5U430

Ubr3, E3 ubiquitin-protein ligase UBR3, mousemouse

Predictions only

Length 1,889 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Ubr3Q5U430 Gm4419-202ENSMUST00000226239 1431 ntBASIC28.52■■■□□ 2.16
Ubr3Q5U430 Gm9959-201ENSMUST00000068277 390 ntBASIC28.52■■■□□ 2.16
Ubr3Q5U430 Jmy-202ENSMUST00000220513 1843 ntTSL 1 (best) BASIC28.51■■■□□ 2.16
Ubr3Q5U430 Gm28417-202ENSMUST00000185881 538 ntTSL 3 BASIC28.51■■■□□ 2.15
Ubr3Q5U430 Rab40c-201ENSMUST00000026826 2466 ntAPPRIS P1 TSL 1 (best) BASIC28.51■■■□□ 2.15
Ubr3Q5U430 Tmem150a-202ENSMUST00000132243 1478 ntTSL 5 BASIC28.5■■■□□ 2.15
Ubr3Q5U430 Smox-205ENSMUST00000110182 985 ntTSL 1 (best) BASIC28.5■■■□□ 2.15
Ubr3Q5U430 Vax1-201ENSMUST00000172821 1044 ntAPPRIS P1 TSL 1 (best) BASIC28.49■■■□□ 2.15
Ubr3Q5U430 Bcl7b-201ENSMUST00000031692 1758 ntAPPRIS P2 TSL 1 (best) BASIC28.49■■■□□ 2.15
Ubr3Q5U430 Eif5a-213ENSMUST00000164359 1281 ntAPPRIS P1 TSL 5 BASIC28.49■■■□□ 2.15
Ubr3Q5U430 Barx1-201ENSMUST00000021813 1399 ntAPPRIS P1 TSL 1 (best) BASIC28.48■■■□□ 2.15
Ubr3Q5U430 Tmem11-201ENSMUST00000062677 1457 ntAPPRIS P1 TSL 1 (best) BASIC28.47■■■□□ 2.15
Ubr3Q5U430 H2afy-202ENSMUST00000045788 1933 ntTSL 1 (best) BASIC28.47■■■□□ 2.15
Ubr3Q5U430 Mpnd-209ENSMUST00000162883 1400 ntTSL 5 BASIC28.47■■■□□ 2.15
Ubr3Q5U430 Irx4-201ENSMUST00000022095 2589 ntAPPRIS P1 TSL 1 (best) BASIC28.47■■■□□ 2.15
Ubr3Q5U430 Gipc1-201ENSMUST00000019577 1522 ntAPPRIS P1 TSL 1 (best) BASIC28.47■■■□□ 2.15
Ubr3Q5U430 Zbtb12-201ENSMUST00000052778 1858 ntAPPRIS P1 TSL 1 (best) BASIC28.46■■■□□ 2.15
Ubr3Q5U430 Ppia-202ENSMUST00000132846 1170 ntAPPRIS P1 TSL 1 (best) BASIC28.46■■■□□ 2.15
Ubr3Q5U430 Fam92a-202ENSMUST00000108285 1639 ntAPPRIS P3 TSL 5 BASIC28.45■■■□□ 2.14
Ubr3Q5U430 Ech1-201ENSMUST00000066264 1267 ntAPPRIS P1 TSL 1 (best) BASIC28.44■■■□□ 2.14
Ubr3Q5U430 Cdc42ep5-201ENSMUST00000076831 1025 ntAPPRIS P1 TSL 1 (best) BASIC28.44■■■□□ 2.14
Ubr3Q5U430 Fn1-208ENSMUST00000186940 1350 ntTSL 1 (best) BASIC28.44■■■□□ 2.14
Ubr3Q5U430 Wdr34-201ENSMUST00000113711 1814 ntAPPRIS P1 TSL 1 (best) BASIC28.44■■■□□ 2.14
Ubr3Q5U430 Micu3-201ENSMUST00000068999 2219 ntAPPRIS P1 TSL 5 BASIC28.44■■■□□ 2.14
Ubr3Q5U430 Polr1d-201ENSMUST00000050970 1196 ntAPPRIS P1 TSL 1 (best) BASIC28.43■■■□□ 2.14
Ubr3Q5U430 C1qtnf5-204ENSMUST00000114821 1365 ntAPPRIS P1 TSL 2 BASIC28.43■■■□□ 2.14
Ubr3Q5U430 Fam96b-203ENSMUST00000164884 918 ntAPPRIS P1 TSL 1 (best) BASIC28.42■■■□□ 2.14
Ubr3Q5U430 1700065D16Rik-202ENSMUST00000188975 506 ntTSL 3 BASIC28.42■■■□□ 2.14
Ubr3Q5U430 Pkig-202ENSMUST00000099105 640 ntAPPRIS P1 TSL 2 BASIC28.42■■■□□ 2.14
Ubr3Q5U430 Runx2-211ENSMUST00000162629 1607 ntAPPRIS ALT2 TSL 5 BASIC28.41■■■□□ 2.14
Ubr3Q5U430 Hist2h3c1-201ENSMUST00000176059 1820 ntAPPRIS P1 BASIC28.41■■■□□ 2.14
Ubr3Q5U430 Hist2h3c1-202ENSMUST00000177796 1825 ntBASIC28.41■■■□□ 2.14
Ubr3Q5U430 Ablim1-208ENSMUST00000111544 2231 ntTSL 5 BASIC28.41■■■□□ 2.14
Ubr3Q5U430 4833418N17Rik-201ENSMUST00000064826 615 ntBASIC28.4■■■□□ 2.14
Ubr3Q5U430 Tmem55b-209ENSMUST00000162957 1465 ntTSL 1 (best) BASIC28.4■■■□□ 2.14
Ubr3Q5U430 Hoxb3os-202ENSMUST00000147410 1945 ntTSL 5 BASIC28.4■■■□□ 2.14
Ubr3Q5U430 Susd3-203ENSMUST00000119721 1249 ntAPPRIS ALT2 TSL 1 (best) BASIC28.4■■■□□ 2.14
Ubr3Q5U430 Tfpt-204ENSMUST00000155592 1091 ntAPPRIS P3 TSL 1 (best) BASIC28.4■■■□□ 2.14
Ubr3Q5U430 4930524J08Rik-201ENSMUST00000046721 603 ntAPPRIS P1 BASIC28.4■■■□□ 2.14
Ubr3Q5U430 Jmjd6-201ENSMUST00000047616 1668 ntAPPRIS P1 TSL 1 (best) BASIC28.39■■■□□ 2.14
Ubr3Q5U430 Mpp6-203ENSMUST00000166318 2222 ntTSL 1 (best) BASIC28.39■■■□□ 2.14
Ubr3Q5U430 Hagh-201ENSMUST00000024974 1101 ntAPPRIS ALT1 TSL 5 BASIC28.39■■■□□ 2.14
Ubr3Q5U430 Gm45095-201ENSMUST00000206736 254 ntTSL 5 BASIC28.38■■■□□ 2.13
Ubr3Q5U430 Gm18755-201ENSMUST00000218030 1099 ntBASIC28.38■■■□□ 2.13
Ubr3Q5U430 Scn1b-201ENSMUST00000098548 1573 ntAPPRIS P1 TSL 1 (best) BASIC28.38■■■□□ 2.13
Ubr3Q5U430 Etfa-201ENSMUST00000034866 1392 ntAPPRIS P1 TSL 1 (best) BASIC28.38■■■□□ 2.13
Ubr3Q5U430 Sox17-202ENSMUST00000116652 1512 ntAPPRIS P1 TSL 1 (best) BASIC28.38■■■□□ 2.13
Ubr3Q5U430 Gm42501-201ENSMUST00000200220 1026 ntBASIC28.38■■■□□ 2.13
Ubr3Q5U430 Pgp-201ENSMUST00000053024 1027 ntAPPRIS P1 TSL 1 (best) BASIC28.38■■■□□ 2.13
Ubr3Q5U430 Bex1-201ENSMUST00000058125 866 ntAPPRIS P1 TSL 1 (best) BASIC28.38■■■□□ 2.13
Ubr3Q5U430 Tlx2-201ENSMUST00000089641 1236 ntAPPRIS P1 TSL 1 (best) BASIC28.38■■■□□ 2.13
Ubr3Q5U430 Fgf16-201ENSMUST00000033581 1645 ntAPPRIS P1 TSL 1 (best) BASIC28.37■■■□□ 2.13
Ubr3Q5U430 Gm13429-202ENSMUST00000128242 692 ntTSL 3 BASIC28.36■■■□□ 2.13
Ubr3Q5U430 Dynlt1f-201ENSMUST00000179554 807 ntAPPRIS P1 TSL 1 (best) BASIC28.36■■■□□ 2.13
Ubr3Q5U430 Sds-204ENSMUST00000201684 1288 ntAPPRIS P1 TSL 5 BASIC28.36■■■□□ 2.13
Ubr3Q5U430 Ndfip1-201ENSMUST00000025293 930 ntAPPRIS P1 TSL 1 (best) BASIC28.36■■■□□ 2.13
Ubr3Q5U430 AC153504.1-201ENSMUST00000218379 2290 ntBASIC28.36■■■□□ 2.13
Ubr3Q5U430 Pdf-201ENSMUST00000055316 1306 ntAPPRIS P1 TSL 1 (best) BASIC28.36■■■□□ 2.13
Ubr3Q5U430 Metrnl-201ENSMUST00000036742 1401 ntAPPRIS P2 TSL 1 (best) BASIC28.36■■■□□ 2.13
Ubr3Q5U430 Pdcd4-203ENSMUST00000165617 1806 ntAPPRIS P1 TSL 1 (best) BASIC28.36■■■□□ 2.13
Ubr3Q5U430 Gm35161-201ENSMUST00000221765 941 ntTSL 5 BASIC28.35■■■□□ 2.13
Ubr3Q5U430 Nenf-201ENSMUST00000046770 742 ntAPPRIS P1 TSL 1 (best) BASIC28.35■■■□□ 2.13
Ubr3Q5U430 Acad9-205ENSMUST00000196648 552 ntTSL 3 BASIC28.34■■■□□ 2.13
Ubr3Q5U430 B230377A18Rik-202ENSMUST00000192921 1364 ntBASIC28.34■■■□□ 2.13
Ubr3Q5U430 Zfp787-201ENSMUST00000094870 1897 ntAPPRIS P1 TSL 1 (best) BASIC28.34■■■□□ 2.13
Ubr3Q5U430 AC122379.1-201ENSMUST00000220658 355 ntTSL 3 BASIC28.34■■■□□ 2.13
Ubr3Q5U430 Vcpkmt-201ENSMUST00000058639 1027 ntAPPRIS P1 TSL 1 (best) BASIC28.34■■■□□ 2.13
Ubr3Q5U430 Ubl7-208ENSMUST00000216841 1426 ntAPPRIS P1 TSL 5 BASIC28.33■■■□□ 2.13
Ubr3Q5U430 Smco4-203ENSMUST00000215907 994 ntAPPRIS P1 TSL 1 (best) BASIC28.32■■■□□ 2.12
Ubr3Q5U430 Tmem106c-201ENSMUST00000064200 1635 ntAPPRIS P1 TSL 1 (best) BASIC28.32■■■□□ 2.12
Ubr3Q5U430 Sac3d1-201ENSMUST00000113533 1374 ntAPPRIS P1 TSL 1 (best) BASIC28.32■■■□□ 2.12
Ubr3Q5U430 Stk19-201ENSMUST00000077477 1120 ntAPPRIS P1 TSL 1 (best) BASIC28.31■■■□□ 2.12
Ubr3Q5U430 Gadd45g-201ENSMUST00000021903 1071 ntAPPRIS P1 TSL 1 (best) BASIC28.3■■■□□ 2.12
Ubr3Q5U430 Pfdn4-204ENSMUST00000109148 736 ntTSL 3 BASIC28.29■■■□□ 2.12
Ubr3Q5U430 Ramp1-202ENSMUST00000165855 852 ntTSL 2 BASIC28.29■■■□□ 2.12
Ubr3Q5U430 Hmg20b-203ENSMUST00000105324 1540 ntAPPRIS P1 TSL 1 (best) BASIC28.29■■■□□ 2.12
Ubr3Q5U430 Cldnd1-204ENSMUST00000162057 1540 ntAPPRIS P1 TSL 5 BASIC28.29■■■□□ 2.12
Ubr3Q5U430 Ildr2-205ENSMUST00000193860 2320 ntTSL 1 (best) BASIC28.29■■■□□ 2.12
Ubr3Q5U430 Pdpk1-203ENSMUST00000115407 1730 ntTSL 5 BASIC28.28■■■□□ 2.12
Ubr3Q5U430 A430027H14Rik-201ENSMUST00000191809 1467 ntBASIC28.28■■■□□ 2.12
Ubr3Q5U430 Gm10837-201ENSMUST00000100294 1536 ntAPPRIS P1 BASIC28.28■■■□□ 2.12
Ubr3Q5U430 Pi16-201ENSMUST00000114699 1243 ntAPPRIS ALT2 TSL 1 (best) BASIC28.27■■■□□ 2.12
Ubr3Q5U430 Psip1-203ENSMUST00000107215 1898 ntTSL 1 (best) BASIC28.27■■■□□ 2.12
Ubr3Q5U430 Rbm45-201ENSMUST00000046389 1898 ntAPPRIS P1 TSL 1 (best) BASIC28.26■■■□□ 2.11
Ubr3Q5U430 Ccdc85c-201ENSMUST00000136175 1302 ntAPPRIS ALT2 TSL 5 BASIC28.26■■■□□ 2.11
Ubr3Q5U430 AC117769.4-201ENSMUST00000225679 685 ntBASIC28.26■■■□□ 2.11
Ubr3Q5U430 Ssbp4-205ENSMUST00000210369 1828 ntTSL 2 BASIC28.26■■■□□ 2.11
Ubr3Q5U430 Pdss1-207ENSMUST00000152170 1538 ntTSL 1 (best) BASIC28.26■■■□□ 2.11
Ubr3Q5U430 Mir155hg-202ENSMUST00000185662 1362 ntTSL 5 BASIC28.25■■■□□ 2.11
Ubr3Q5U430 Clk2-203ENSMUST00000121931 2112 ntAPPRIS ALT1 TSL 5 BASIC28.23■■■□□ 2.11
Ubr3Q5U430 Kcnk2-205ENSMUST00000192723 1642 ntAPPRIS ALT1 TSL 1 (best) BASIC28.23■■■□□ 2.11
Ubr3Q5U430 Gm20208-202ENSMUST00000219905 1528 ntTSL 1 (best) BASIC28.23■■■□□ 2.11
Ubr3Q5U430 Dynlrb1-204ENSMUST00000150602 788 ntTSL 2 BASIC28.23■■■□□ 2.11
Ubr3Q5U430 Ltb-203ENSMUST00000173600 905 ntAPPRIS ALT2 TSL 5 BASIC28.23■■■□□ 2.11
Ubr3Q5U430 Ccdc84-212ENSMUST00000217351 888 ntTSL 3 BASIC28.23■■■□□ 2.11
Ubr3Q5U430 Gm10232-201ENSMUST00000089221 720 ntBASIC28.23■■■□□ 2.11
Ubr3Q5U430 B3gat1-201ENSMUST00000115269 1665 ntTSL 1 (best) BASIC28.23■■■□□ 2.11
Ubr3Q5U430 Spata6-213ENSMUST00000153746 1444 ntTSL 1 (best) BASIC28.22■■■□□ 2.11
Ubr3Q5U430 AC117245.1-201ENSMUST00000215481 566 ntTSL 3 BASIC28.22■■■□□ 2.11
Ubr3Q5U430 Pmpca-202ENSMUST00000114093 1638 ntTSL 1 (best) BASIC28.22■■■□□ 2.11
Retrieved 100 of 76,532 protein–RNA pairs in 62.9 ms