Protein–RNA interactions for Protein: P97436

Nkx3-1, Homeobox protein Nkx-3.1, mousemouse

Predictions only

Length 237 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Nkx3-1P97436 Rgs7-206ENSMUST00000194555 2431 ntAPPRIS ALT2 TSL 1 (best) BASIC19.53■□□□□ 0.72
Nkx3-1P97436 Neurog2-201ENSMUST00000029587 2227 ntAPPRIS P1 TSL 1 (best) BASIC19.53■□□□□ 0.72
Nkx3-1P97436 Thra-202ENSMUST00000103139 2246 ntAPPRIS P1 TSL 1 (best) BASIC19.52■□□□□ 0.72
Nkx3-1P97436 Gm29735-201ENSMUST00000209599 660 ntAPPRIS P1 BASIC19.52■□□□□ 0.72
Nkx3-1P97436 Pde8b-204ENSMUST00000159608 2370 ntTSL 5 BASIC19.52■□□□□ 0.72
Nkx3-1P97436 Usp2-206ENSMUST00000176416 1486 ntAPPRIS ALT2 TSL 1 (best) BASIC19.52■□□□□ 0.72
Nkx3-1P97436 Bag1-203ENSMUST00000191273 1348 ntAPPRIS ALT2 TSL 1 (best) BASIC19.51■□□□□ 0.71
Nkx3-1P97436 Cyp2r1-202ENSMUST00000119712 917 ntTSL 5 BASIC19.51■□□□□ 0.71
Nkx3-1P97436 Hist2h3c1-201ENSMUST00000176059 1820 ntAPPRIS P1 BASIC19.51■□□□□ 0.71
Nkx3-1P97436 Hist2h3c1-202ENSMUST00000177796 1825 ntBASIC19.51■□□□□ 0.71
Nkx3-1P97436 Snx21-203ENSMUST00000152471 1243 ntTSL 1 (best) BASIC19.5■□□□□ 0.71
Nkx3-1P97436 Gm7544-201ENSMUST00000222426 828 ntAPPRIS P1 BASIC19.5■□□□□ 0.71
Nkx3-1P97436 Lsm4-201ENSMUST00000034311 925 ntAPPRIS P1 TSL 1 (best) BASIC19.5■□□□□ 0.71
Nkx3-1P97436 Gm15546-201ENSMUST00000122095 826 ntBASIC19.49■□□□□ 0.71
Nkx3-1P97436 Foxk2-201ENSMUST00000106113 5029 ntAPPRIS P1 TSL 1 (best) BASIC19.49■□□□□ 0.71
Nkx3-1P97436 Pdpk1-203ENSMUST00000115407 1730 ntTSL 5 BASIC19.48■□□□□ 0.71
Nkx3-1P97436 Dexi-201ENSMUST00000038281 1389 ntAPPRIS P1 TSL 1 (best) BASIC19.48■□□□□ 0.71
Nkx3-1P97436 Gm2415-202ENSMUST00000134688 401 ntTSL 2 BASIC19.48■□□□□ 0.71
Nkx3-1P97436 Gm12905-201ENSMUST00000153814 658 ntTSL 2 BASIC19.48■□□□□ 0.71
Nkx3-1P97436 Foxe3-201ENSMUST00000050940 867 ntAPPRIS P1 BASIC19.48■□□□□ 0.71
Nkx3-1P97436 St7-208ENSMUST00000115419 2194 ntTSL 1 (best) BASIC19.48■□□□□ 0.71
Nkx3-1P97436 Pdgfa-204ENSMUST00000110897 1287 ntAPPRIS P1 TSL 5 BASIC19.47■□□□□ 0.71
Nkx3-1P97436 AC166358.2-201ENSMUST00000223403 734 ntTSL 5 BASIC19.47■□□□□ 0.71
Nkx3-1P97436 Ntn5-203ENSMUST00000183120 1491 ntTSL 1 (best) BASIC19.47■□□□□ 0.71
Nkx3-1P97436 Kcnk2-205ENSMUST00000192723 1642 ntAPPRIS ALT1 TSL 1 (best) BASIC19.47■□□□□ 0.71
Nkx3-1P97436 AC117769.4-201ENSMUST00000225679 685 ntBASIC19.46■□□□□ 0.71
Nkx3-1P97436 Coprs-201ENSMUST00000033839 793 ntAPPRIS P1 TSL 1 (best) BASIC19.46■□□□□ 0.71
Nkx3-1P97436 Emid1-201ENSMUST00000062821 1947 ntAPPRIS P2 TSL 1 (best) BASIC19.46■□□□□ 0.71
Nkx3-1P97436 Eif5a-208ENSMUST00000108611 1353 ntAPPRIS P1 TSL 1 (best) BASIC19.45■□□□□ 0.7
Nkx3-1P97436 Tmem70-203ENSMUST00000177501 1636 ntAPPRIS P3 TSL 1 (best) BASIC19.45■□□□□ 0.7
Nkx3-1P97436 Gm43592-201ENSMUST00000196922 1165 ntBASIC19.45■□□□□ 0.7
Nkx3-1P97436 Gm6217-201ENSMUST00000222182 829 ntAPPRIS P1 BASIC19.45■□□□□ 0.7
Nkx3-1P97436 Dhrs11-201ENSMUST00000047560 1254 ntAPPRIS P1 TSL 1 (best) BASIC19.45■□□□□ 0.7
Nkx3-1P97436 Hras-202ENSMUST00000097957 1199 ntAPPRIS P1 TSL 2 BASIC19.45■□□□□ 0.7
Nkx3-1P97436 Hoxd9-201ENSMUST00000059272 2136 ntAPPRIS P1 TSL 1 (best) BASIC19.45■□□□□ 0.7
Nkx3-1P97436 B230377A18Rik-202ENSMUST00000192921 1364 ntBASIC19.44■□□□□ 0.7
Nkx3-1P97436 Runx2-211ENSMUST00000162629 1607 ntAPPRIS ALT2 TSL 5 BASIC19.44■□□□□ 0.7
Nkx3-1P97436 Rbm45-201ENSMUST00000046389 1898 ntAPPRIS P1 TSL 1 (best) BASIC19.44■□□□□ 0.7
Nkx3-1P97436 Gxylt1-202ENSMUST00000057896 1891 ntAPPRIS ALT2 TSL 5 BASIC19.44■□□□□ 0.7
Nkx3-1P97436 Tmem11-201ENSMUST00000062677 1457 ntAPPRIS P1 TSL 1 (best) BASIC19.44■□□□□ 0.7
Nkx3-1P97436 Tmpo-203ENSMUST00000092219 1854 ntTSL 1 (best) BASIC19.43■□□□□ 0.7
Nkx3-1P97436 Spryd7-202ENSMUST00000100496 1459 ntTSL 1 (best) BASIC19.43■□□□□ 0.7
Nkx3-1P97436 Gm22567-201ENSMUST00000175542 342 ntBASIC19.43■□□□□ 0.7
Nkx3-1P97436 Trappc6b-207ENSMUST00000218686 785 ntTSL 3 BASIC19.43■□□□□ 0.7
Nkx3-1P97436 Glrx3-201ENSMUST00000064404 1685 ntAPPRIS P2 TSL 1 (best) BASIC19.43■□□□□ 0.7
Nkx3-1P97436 Ccna1-202ENSMUST00000197238 1719 ntAPPRIS P1 TSL 5 BASIC19.42■□□□□ 0.7
Nkx3-1P97436 Dynll1-202ENSMUST00000112090 729 ntAPPRIS P1 TSL 2 BASIC19.42■□□□□ 0.7
Nkx3-1P97436 Gm5522-201ENSMUST00000189483 1242 ntBASIC19.42■□□□□ 0.7
Nkx3-1P97436 Gm20208-202ENSMUST00000219905 1528 ntTSL 1 (best) BASIC19.41■□□□□ 0.7
Nkx3-1P97436 Scn1b-201ENSMUST00000098548 1573 ntAPPRIS P1 TSL 1 (best) BASIC19.41■□□□□ 0.7
Nkx3-1P97436 Gpr27-201ENSMUST00000101122 2388 ntAPPRIS P1 BASIC19.41■□□□□ 0.7
Nkx3-1P97436 March5-202ENSMUST00000112391 1293 ntTSL 1 (best) BASIC19.41■□□□□ 0.7
Nkx3-1P97436 Kcnj6-201ENSMUST00000095873 1773 ntTSL 1 (best) BASIC19.41■□□□□ 0.7
Nkx3-1P97436 Heca-201ENSMUST00000037879 5098 ntAPPRIS P1 TSL 1 (best) BASIC19.4■□□□□ 0.7
Nkx3-1P97436 Preb-209ENSMUST00000202567 1869 ntTSL 1 (best) BASIC19.4■□□□□ 0.7
Nkx3-1P97436 St6galnac6-204ENSMUST00000095045 2536 ntAPPRIS ALT1 TSL 1 (best) BASIC19.4■□□□□ 0.7
Nkx3-1P97436 Nsd1-203ENSMUST00000224156 1149 ntBASIC19.4■□□□□ 0.7
Nkx3-1P97436 Pcsk1n-201ENSMUST00000041096 2193 ntAPPRIS P1 TSL 1 (best) BASIC19.4■□□□□ 0.7
Nkx3-1P97436 Jdp2-201ENSMUST00000050687 1643 ntAPPRIS P1 TSL 1 (best) BASIC19.4■□□□□ 0.7
Nkx3-1P97436 Isoc1-201ENSMUST00000025503 2563 ntAPPRIS P1 TSL 1 (best) BASIC19.39■□□□□ 0.7
Nkx3-1P97436 Sin3b-202ENSMUST00000109950 1024 ntTSL 1 (best) BASIC19.39■□□□□ 0.69
Nkx3-1P97436 Mpnd-208ENSMUST00000159996 1444 ntAPPRIS ALT2 TSL 5 BASIC19.39■□□□□ 0.69
Nkx3-1P97436 Fgf16-201ENSMUST00000033581 1645 ntAPPRIS P1 TSL 1 (best) BASIC19.39■□□□□ 0.69
Nkx3-1P97436 Tmx4-202ENSMUST00000110119 596 ntTSL 2 BASIC19.38■□□□□ 0.69
Nkx3-1P97436 Vax1-201ENSMUST00000172821 1044 ntAPPRIS P1 TSL 1 (best) BASIC19.38■□□□□ 0.69
Nkx3-1P97436 Gm28417-202ENSMUST00000185881 538 ntTSL 3 BASIC19.38■□□□□ 0.69
Nkx3-1P97436 Ube2k-206ENSMUST00000201984 1449 ntTSL 3 BASIC19.38■□□□□ 0.69
Nkx3-1P97436 Kansl2-201ENSMUST00000023727 2311 ntAPPRIS ALT2 TSL 5 BASIC19.37■□□□□ 0.69
Nkx3-1P97436 Tm6sf1-201ENSMUST00000041890 2226 ntAPPRIS P1 TSL 1 (best) BASIC19.37■□□□□ 0.69
Nkx3-1P97436 Srcap-211ENSMUST00000189136 1960 ntTSL 1 (best) BASIC19.37■□□□□ 0.69
Nkx3-1P97436 Phf2os1-201ENSMUST00000123212 498 ntTSL 3 BASIC19.37■□□□□ 0.69
Nkx3-1P97436 Fam98c-209ENSMUST00000164589 1293 ntAPPRIS P1 TSL 5 BASIC19.37■□□□□ 0.69
Nkx3-1P97436 Ak2-201ENSMUST00000030583 986 ntAPPRIS P4 TSL 1 (best) BASIC19.37■□□□□ 0.69
Nkx3-1P97436 Rnaset2b-201ENSMUST00000089119 1013 ntAPPRIS P1 TSL 1 (best) BASIC19.37■□□□□ 0.69
Nkx3-1P97436 Suds3-201ENSMUST00000086471 2425 ntAPPRIS P3 TSL 1 (best) BASIC19.37■□□□□ 0.69
Nkx3-1P97436 Maz-201ENSMUST00000032916 2347 ntTSL 1 (best) BASIC19.37■□□□□ 0.69
Nkx3-1P97436 Gng12-204ENSMUST00000114225 1876 ntAPPRIS P1 TSL 1 (best) BASIC19.37■□□□□ 0.69
Nkx3-1P97436 Msto1-202ENSMUST00000126245 1875 ntAPPRIS P1 TSL 1 (best) BASIC19.37■□□□□ 0.69
Nkx3-1P97436 Dusp2-201ENSMUST00000028846 1617 ntAPPRIS P1 TSL 1 (best) BASIC19.36■□□□□ 0.69
Nkx3-1P97436 Kcna7-201ENSMUST00000107774 2182 ntAPPRIS P1 TSL 1 (best) BASIC19.36■□□□□ 0.69
Nkx3-1P97436 Upf3a-201ENSMUST00000043767 2057 ntAPPRIS P1 TSL 1 (best) BASIC19.36■□□□□ 0.69
Nkx3-1P97436 Gm13238-201ENSMUST00000117655 780 ntBASIC19.36■□□□□ 0.69
Nkx3-1P97436 AC102554.1-201ENSMUST00000216236 537 ntTSL 5 BASIC19.36■□□□□ 0.69
Nkx3-1P97436 Tmem106c-201ENSMUST00000064200 1635 ntAPPRIS P1 TSL 1 (best) BASIC19.36■□□□□ 0.69
Nkx3-1P97436 Fam149b-203ENSMUST00000090499 2370 ntAPPRIS P4 TSL 1 (best) BASIC19.35■□□□□ 0.69
Nkx3-1P97436 Asf1a-201ENSMUST00000020004 2201 ntAPPRIS P1 TSL 1 (best) BASIC19.35■□□□□ 0.69
Nkx3-1P97436 Gng12-203ENSMUST00000114224 680 ntAPPRIS P1 TSL 3 BASIC19.35■□□□□ 0.69
Nkx3-1P97436 Gng12-206ENSMUST00000114227 1125 ntAPPRIS P1 TSL 1 (best) BASIC19.35■□□□□ 0.69
Nkx3-1P97436 Tsc22d1-204ENSMUST00000110888 4999 ntTSL 1 (best) BASIC19.35■□□□□ 0.69
Nkx3-1P97436 Sox17-202ENSMUST00000116652 1512 ntAPPRIS P1 TSL 1 (best) BASIC19.35■□□□□ 0.69
Nkx3-1P97436 Vmac-201ENSMUST00000067931 2174 ntAPPRIS P3 TSL 1 (best) BASIC19.34■□□□□ 0.69
Nkx3-1P97436 Cadm1-209ENSMUST00000152459 1784 ntTSL 1 (best) BASIC19.34■□□□□ 0.69
Nkx3-1P97436 Bin1-202ENSMUST00000091967 2118 ntAPPRIS ALT2 TSL 1 (best) BASIC19.34■□□□□ 0.69
Nkx3-1P97436 Cckbr-202ENSMUST00000181339 1326 ntTSL 1 (best) BASIC19.34■□□□□ 0.69
Nkx3-1P97436 Cadps-203ENSMUST00000112658 5458 ntAPPRIS ALT2 TSL 1 (best) BASIC19.34■□□□□ 0.69
Nkx3-1P97436 Rin3-207ENSMUST00000150795 937 ntTSL 1 (best) BASIC19.34■□□□□ 0.69
Nkx3-1P97436 Gm43566-201ENSMUST00000196851 808 ntBASIC19.34■□□□□ 0.69
Nkx3-1P97436 Mpv17l2-201ENSMUST00000038626 980 ntAPPRIS P1 TSL 1 (best) BASIC19.34■□□□□ 0.69
Nkx3-1P97436 Pom121-201ENSMUST00000111171 5580 ntAPPRIS P1 TSL 1 (best) BASIC19.34■□□□□ 0.69
Nkx3-1P97436 Panx2-202ENSMUST00000161372 2314 ntTSL 1 (best) BASIC19.34■□□□□ 0.69
Retrieved 100 of 76,532 protein–RNA pairs in 25.5 ms