Protein–RNA interactions for Protein: P18111

Cdx1, Homeobox protein CDX-1, mousemouse

Predictions only

Length 268 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Cdx1P18111 Hp1bp3-205ENSMUST00000105827 5155 ntAPPRIS ALT2 TSL 5 BASIC17.95■□□□□ 0.46
Cdx1P18111 Bckdhb-206ENSMUST00000190637 1477 ntAPPRIS ALT2 TSL 1 (best) BASIC17.95■□□□□ 0.46
Cdx1P18111 Ablim1-208ENSMUST00000111544 2231 ntTSL 5 BASIC17.94■□□□□ 0.46
Cdx1P18111 Odc1-201ENSMUST00000171737 2208 ntAPPRIS P1 TSL 1 (best) BASIC17.94■□□□□ 0.46
Cdx1P18111 Mtf2-202ENSMUST00000112626 1968 ntTSL 5 BASIC17.94■□□□□ 0.46
Cdx1P18111 Dnajb2-202ENSMUST00000082158 1253 ntAPPRIS P1 TSL 5 BASIC17.94■□□□□ 0.46
Cdx1P18111 Ttc7b-201ENSMUST00000062957 3446 ntAPPRIS P1 TSL 1 (best) BASIC17.94■□□□□ 0.46
Cdx1P18111 Slc16a11-211ENSMUST00000171032 1754 ntAPPRIS P1 TSL 5 BASIC17.94■□□□□ 0.46
Cdx1P18111 Scarb1-202ENSMUST00000111390 2367 ntTSL 1 (best) BASIC17.94■□□□□ 0.46
Cdx1P18111 Stard10-202ENSMUST00000163799 1723 ntTSL 1 (best) BASIC17.93■□□□□ 0.46
Cdx1P18111 Lrrc14-201ENSMUST00000036423 2093 ntAPPRIS P1 TSL 1 (best) BASIC17.93■□□□□ 0.46
Cdx1P18111 Ezh2-201ENSMUST00000081721 2787 ntAPPRIS P2 TSL 1 (best) BASIC17.93■□□□□ 0.46
Cdx1P18111 Atpaf1-203ENSMUST00000176047 2330 ntAPPRIS P1 TSL 1 (best) BASIC17.92■□□□□ 0.46
Cdx1P18111 Fbxl3-204ENSMUST00000132004 2534 ntTSL 1 (best) BASIC17.92■□□□□ 0.46
Cdx1P18111 5730480H06Rik-201ENSMUST00000030968 1616 ntAPPRIS P1 TSL 1 (best) BASIC17.92■□□□□ 0.46
Cdx1P18111 Ppp4r2-201ENSMUST00000063854 4874 ntAPPRIS P1 TSL 1 (best) BASIC17.92■□□□□ 0.46
Cdx1P18111 Guk1-204ENSMUST00000170202 1078 ntAPPRIS P1 TSL 1 (best) BASIC17.92■□□□□ 0.46
Cdx1P18111 Man1a-203ENSMUST00000105470 2847 ntAPPRIS P1 TSL 5 BASIC17.92■□□□□ 0.46
Cdx1P18111 Dtnb-210ENSMUST00000173199 2820 ntAPPRIS ALT2 TSL 5 BASIC17.92■□□□□ 0.46
Cdx1P18111 Tsg101-201ENSMUST00000014546 1949 ntAPPRIS P1 TSL 1 (best) BASIC17.92■□□□□ 0.46
Cdx1P18111 Sugct-202ENSMUST00000220514 1351 ntTSL 1 (best) BASIC17.91■□□□□ 0.46
Cdx1P18111 Fance-203ENSMUST00000114803 1980 ntTSL 1 (best) BASIC17.91■□□□□ 0.46
Cdx1P18111 Mapkapk2-201ENSMUST00000016672 2854 ntAPPRIS P1 TSL 1 (best) BASIC17.91■□□□□ 0.46
Cdx1P18111 Dgat2-201ENSMUST00000033001 2262 ntAPPRIS P1 TSL 1 (best) BASIC17.91■□□□□ 0.46
Cdx1P18111 Zgpat-202ENSMUST00000108807 2072 ntAPPRIS P1 TSL 1 (best) BASIC17.91■□□□□ 0.46
Cdx1P18111 Foxg1-201ENSMUST00000021333 2941 ntAPPRIS P1 TSL 1 (best) BASIC17.91■□□□□ 0.46
Cdx1P18111 Dyrk1b-202ENSMUST00000172467 2523 ntTSL 1 (best) BASIC17.91■□□□□ 0.46
Cdx1P18111 Nkain2-201ENSMUST00000092602 558 ntBASIC17.91■□□□□ 0.46
Cdx1P18111 Mrps7-201ENSMUST00000058109 1962 ntAPPRIS P1 TSL 1 (best) BASIC17.91■□□□□ 0.46
Cdx1P18111 Tsen34-204ENSMUST00000108630 1779 ntTSL 1 (best) BASIC17.91■□□□□ 0.46
Cdx1P18111 Thra-201ENSMUST00000064187 2452 ntTSL 1 (best) BASIC17.91■□□□□ 0.46
Cdx1P18111 Banp-202ENSMUST00000093078 2289 ntTSL 1 (best) BASIC17.91■□□□□ 0.46
Cdx1P18111 Ubtf-213ENSMUST00000178839 4580 ntAPPRIS ALT2 TSL 1 (best) BASIC17.91■□□□□ 0.46
Cdx1P18111 Ppp1r12c-201ENSMUST00000013886 2983 ntAPPRIS P1 TSL 1 (best) BASIC17.9■□□□□ 0.46
Cdx1P18111 Pdia5-201ENSMUST00000023550 1808 ntAPPRIS P1 TSL 1 (best) BASIC17.9■□□□□ 0.46
Cdx1P18111 Hibadh-201ENSMUST00000031788 1825 ntAPPRIS P1 TSL 1 (best) BASIC17.9■□□□□ 0.46
Cdx1P18111 Rbm17-201ENSMUST00000040314 1599 ntAPPRIS P1 TSL 1 (best) BASIC17.9■□□□□ 0.46
Cdx1P18111 Susd6-203ENSMUST00000220238 2127 ntAPPRIS ALT2 TSL 1 (best) BASIC17.9■□□□□ 0.46
Cdx1P18111 Pim3-201ENSMUST00000042818 2419 ntAPPRIS P1 TSL 1 (best) BASIC17.9■□□□□ 0.46
Cdx1P18111 Amigo1-203ENSMUST00000106659 1360 ntTSL 1 (best) BASIC17.9■□□□□ 0.46
Cdx1P18111 Gm30346-201ENSMUST00000218641 1699 ntBASIC17.9■□□□□ 0.46
Cdx1P18111 Mfn1-201ENSMUST00000091257 4562 ntAPPRIS P1 TSL 1 (best) BASIC17.89■□□□□ 0.45
Cdx1P18111 Maz-203ENSMUST00000205568 2650 ntAPPRIS P1 TSL 5 BASIC17.89■□□□□ 0.45
Cdx1P18111 Ccna1-202ENSMUST00000197238 1719 ntAPPRIS P1 TSL 5 BASIC17.89■□□□□ 0.45
Cdx1P18111 Aif1l-201ENSMUST00000001920 3117 ntAPPRIS P1 TSL 1 (best) BASIC17.89■□□□□ 0.45
Cdx1P18111 Set-201ENSMUST00000067996 2834 ntAPPRIS ALT2 TSL 1 (best) BASIC17.89■□□□□ 0.45
Cdx1P18111 Eml4-202ENSMUST00000096766 5445 ntAPPRIS ALT2 TSL 1 (best) BASIC17.88■□□□□ 0.45
Cdx1P18111 Wt1-209ENSMUST00000213301 1554 ntAPPRIS P2 TSL 1 (best) BASIC17.88■□□□□ 0.45
Cdx1P18111 Fezf2-201ENSMUST00000022262 2188 ntAPPRIS P1 TSL 1 (best) BASIC17.88■□□□□ 0.45
Cdx1P18111 Usp39-201ENSMUST00000070345 2244 ntAPPRIS P1 TSL 1 (best) BASIC17.88■□□□□ 0.45
Cdx1P18111 Cntln-204ENSMUST00000169371 5365 ntAPPRIS ALT2 TSL 5 BASIC17.88■□□□□ 0.45
Cdx1P18111 Lgi2-201ENSMUST00000039750 6456 ntAPPRIS P3 TSL 1 (best) BASIC17.88■□□□□ 0.45
Cdx1P18111 Rpsa-204ENSMUST00000217317 1599 ntAPPRIS P1 TSL 1 (best) BASIC17.87■□□□□ 0.45
Cdx1P18111 Socs2-213ENSMUST00000170690 2195 ntAPPRIS P1 TSL 3 BASIC17.87■□□□□ 0.45
Cdx1P18111 Phox2b-201ENSMUST00000012664 3013 ntAPPRIS P1 TSL 1 (best) BASIC17.87■□□□□ 0.45
Cdx1P18111 Gm11529-201ENSMUST00000153012 639 ntTSL 1 (best) BASIC17.87■□□□□ 0.45
Cdx1P18111 Gm20402-201ENSMUST00000174738 687 ntTSL 3 BASIC17.87■□□□□ 0.45
Cdx1P18111 Pm20d2-201ENSMUST00000098181 1445 ntAPPRIS P1 TSL 5 BASIC17.87■□□□□ 0.45
Cdx1P18111 Lbx1-201ENSMUST00000099401 2484 ntAPPRIS P1 TSL 1 (best) BASIC17.87■□□□□ 0.45
Cdx1P18111 Vdac1-202ENSMUST00000102758 2022 ntAPPRIS P1 TSL 1 (best) BASIC17.86■□□□□ 0.45
Cdx1P18111 Osbp-201ENSMUST00000025590 4578 ntAPPRIS P1 TSL 5 BASIC17.86■□□□□ 0.45
Cdx1P18111 Ewsr1-205ENSMUST00000102930 2174 ntAPPRIS ALT2 TSL 5 BASIC17.86■□□□□ 0.45
Cdx1P18111 Rxrb-201ENSMUST00000044858 2623 ntAPPRIS P4 TSL 1 (best) BASIC17.85■□□□□ 0.45
Cdx1P18111 Fam193b-201ENSMUST00000021957 4341 ntAPPRIS P1 TSL 1 (best) BASIC17.85■□□□□ 0.45
Cdx1P18111 Rfx5-205ENSMUST00000107260 2355 ntAPPRIS P1 TSL 5 BASIC17.85■□□□□ 0.45
Cdx1P18111 Tspan33-202ENSMUST00000115250 1977 ntAPPRIS ALT1 TSL 1 (best) BASIC17.85■□□□□ 0.45
Cdx1P18111 A530058N18Rik-203ENSMUST00000135729 1405 ntTSL 1 (best) BASIC17.85■□□□□ 0.45
Cdx1P18111 Ppp4c-211ENSMUST00000206570 1400 ntAPPRIS P1 TSL 1 (best) BASIC17.85■□□□□ 0.45
Cdx1P18111 AC163623.1-201ENSMUST00000213738 727 ntAPPRIS P1 TSL 3 BASIC17.85■□□□□ 0.45
Cdx1P18111 Bckdhb-201ENSMUST00000034801 1472 ntAPPRIS P3 TSL 1 (best) BASIC17.85■□□□□ 0.45
Cdx1P18111 Cebpa-202ENSMUST00000205391 2161 ntTSL 5 BASIC17.84■□□□□ 0.45
Cdx1P18111 Mapk1-203ENSMUST00000115731 1747 ntAPPRIS P1 TSL 1 (best) BASIC17.84■□□□□ 0.45
Cdx1P18111 Atn1-201ENSMUST00000088357 4433 ntAPPRIS P1 TSL 1 (best) BASIC17.84■□□□□ 0.45
Cdx1P18111 Glrx2-205ENSMUST00000145571 758 ntTSL 2 BASIC17.84■□□□□ 0.45
Cdx1P18111 1700084E18Rik-202ENSMUST00000205624 729 ntBASIC17.84■□□□□ 0.45
Cdx1P18111 Acss2-203ENSMUST00000103142 2145 ntTSL 5 BASIC17.84■□□□□ 0.45
Cdx1P18111 Fbxw4-201ENSMUST00000046869 2068 ntAPPRIS P1 TSL 1 (best) BASIC17.84■□□□□ 0.45
Cdx1P18111 Spsb3-205ENSMUST00000120943 1949 ntAPPRIS ALT2 TSL 1 (best) BASIC17.84■□□□□ 0.45
Cdx1P18111 Rhbdl1-201ENSMUST00000026831 1711 ntAPPRIS P1 TSL 1 (best) BASIC17.84■□□□□ 0.45
Cdx1P18111 Arl5a-201ENSMUST00000036541 5239 ntAPPRIS P1 TSL 1 (best) BASIC17.83■□□□□ 0.44
Cdx1P18111 Slc15a4-201ENSMUST00000031367 2732 ntAPPRIS P1 TSL 1 (best) BASIC17.83■□□□□ 0.44
Cdx1P18111 Mras-201ENSMUST00000035045 4701 ntAPPRIS P1 TSL 1 (best) BASIC17.83■□□□□ 0.44
Cdx1P18111 Ppp1r14c-201ENSMUST00000043374 2617 ntAPPRIS P1 TSL 1 (best) BASIC17.83■□□□□ 0.44
Cdx1P18111 Bend6-201ENSMUST00000062289 2487 ntAPPRIS P1 TSL 1 (best) BASIC17.82■□□□□ 0.44
Cdx1P18111 Phlda3-201ENSMUST00000038945 1435 ntAPPRIS P1 TSL 1 (best) BASIC17.82■□□□□ 0.44
Cdx1P18111 Pth1r-201ENSMUST00000006005 2307 ntAPPRIS P1 TSL 1 (best) BASIC17.82■□□□□ 0.44
Cdx1P18111 Frmd5-201ENSMUST00000110592 2222 ntAPPRIS P1 TSL 5 BASIC17.82■□□□□ 0.44
Cdx1P18111 Endog-201ENSMUST00000015481 1063 ntAPPRIS P1 TSL 1 (best) BASIC17.82■□□□□ 0.44
Cdx1P18111 Zcchc2-202ENSMUST00000119166 6368 ntAPPRIS ALT2 TSL 1 (best) BASIC17.82■□□□□ 0.44
Cdx1P18111 Nab2-202ENSMUST00000099157 2311 ntTSL 1 (best) BASIC17.82■□□□□ 0.44
Cdx1P18111 Fgf20-201ENSMUST00000034014 1476 ntAPPRIS P1 TSL 1 (best) BASIC17.82■□□□□ 0.44
Cdx1P18111 Prr5-201ENSMUST00000065499 1830 ntAPPRIS P3 TSL 1 (best) BASIC17.82■□□□□ 0.44
Cdx1P18111 Gfra4-203ENSMUST00000110234 600 ntTSL 1 (best) BASIC17.81■□□□□ 0.44
Cdx1P18111 Gfra4-204ENSMUST00000110235 573 ntTSL 1 (best) BASIC17.81■□□□□ 0.44
Cdx1P18111 Hspb1-202ENSMUST00000111155 930 ntTSL 1 (best) BASIC17.81■□□□□ 0.44
Cdx1P18111 Osbpl1a-209ENSMUST00000122175 1203 ntTSL 1 (best) BASIC17.81■□□□□ 0.44
Cdx1P18111 Cadps-202ENSMUST00000112657 5455 ntAPPRIS ALT2 TSL 5 BASIC17.81■□□□□ 0.44
Cdx1P18111 Zmynd12-201ENSMUST00000094819 1464 ntAPPRIS P1 TSL 1 (best) BASIC17.81■□□□□ 0.44
Cdx1P18111 Gm26766-202ENSMUST00000227544 2347 ntBASIC17.81■□□□□ 0.44
Cdx1P18111 BC005561-201ENSMUST00000096452 5409 ntAPPRIS P1 TSL 2 BASIC17.81■□□□□ 0.44
Retrieved 100 of 76,532 protein–RNA pairs in 10.3 ms