Protein–RNA interactions for Protein: P10855

Ccl3, C-C motif chemokine 3, mousemouse

Predictions only

Length 92 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Ccl3P10855 Gng12-206ENSMUST00000114227 1125 ntAPPRIS P1 TSL 1 (best) BASIC20.25■□□□□ 0.83
Ccl3P10855 Vax1-201ENSMUST00000172821 1044 ntAPPRIS P1 TSL 1 (best) BASIC20.25■□□□□ 0.83
Ccl3P10855 Gm28417-202ENSMUST00000185881 538 ntTSL 3 BASIC20.25■□□□□ 0.83
Ccl3P10855 Mpv17l2-201ENSMUST00000038626 980 ntAPPRIS P1 TSL 1 (best) BASIC20.25■□□□□ 0.83
Ccl3P10855 Mpnd-208ENSMUST00000159996 1444 ntAPPRIS ALT2 TSL 5 BASIC20.25■□□□□ 0.83
Ccl3P10855 Tmem11-201ENSMUST00000062677 1457 ntAPPRIS P1 TSL 1 (best) BASIC20.24■□□□□ 0.83
Ccl3P10855 Casd1-204ENSMUST00000181734 1063 ntTSL 5 BASIC20.24■□□□□ 0.83
Ccl3P10855 Thra-202ENSMUST00000103139 2246 ntAPPRIS P1 TSL 1 (best) BASIC20.24■□□□□ 0.83
Ccl3P10855 Pde8b-204ENSMUST00000159608 2370 ntTSL 5 BASIC20.24■□□□□ 0.83
Ccl3P10855 Dyrk1a-202ENSMUST00000119878 5759 ntAPPRIS P1 TSL 5 BASIC20.24■□□□□ 0.83
Ccl3P10855 Gm15820-201ENSMUST00000201566 728 ntBASIC20.23■□□□□ 0.83
Ccl3P10855 H2afj-202ENSMUST00000203982 577 ntAPPRIS ALT1 TSL 3 BASIC20.23■□□□□ 0.83
Ccl3P10855 AC093043.1-201ENSMUST00000226700 898 ntBASIC20.23■□□□□ 0.83
Ccl3P10855 Syce2-202ENSMUST00000136026 1686 ntAPPRIS P3 TSL 1 (best) BASIC20.22■□□□□ 0.83
Ccl3P10855 Gm15039-201ENSMUST00000118914 875 ntBASIC20.22■□□□□ 0.83
Ccl3P10855 Gm45444-201ENSMUST00000211394 898 ntBASIC20.22■□□□□ 0.83
Ccl3P10855 Sarnp-203ENSMUST00000219512 953 ntTSL 3 BASIC20.22■□□□□ 0.83
Ccl3P10855 Hoxd9-201ENSMUST00000059272 2136 ntAPPRIS P1 TSL 1 (best) BASIC20.22■□□□□ 0.83
Ccl3P10855 Fgf16-201ENSMUST00000033581 1645 ntAPPRIS P1 TSL 1 (best) BASIC20.22■□□□□ 0.83
Ccl3P10855 Unc119-201ENSMUST00000002127 1329 ntAPPRIS P1 TSL 1 (best) BASIC20.22■□□□□ 0.83
Ccl3P10855 Rbm45-201ENSMUST00000046389 1898 ntAPPRIS P1 TSL 1 (best) BASIC20.22■□□□□ 0.83
Ccl3P10855 Scn1b-201ENSMUST00000098548 1573 ntAPPRIS P1 TSL 1 (best) BASIC20.21■□□□□ 0.83
Ccl3P10855 Dusp2-201ENSMUST00000028846 1617 ntAPPRIS P1 TSL 1 (best) BASIC20.21■□□□□ 0.83
Ccl3P10855 A930002H24Rik-201ENSMUST00000050753 492 ntAPPRIS P1 BASIC20.21■□□□□ 0.83
Ccl3P10855 Ccna1-202ENSMUST00000197238 1719 ntAPPRIS P1 TSL 5 BASIC20.21■□□□□ 0.83
Ccl3P10855 Cckbr-202ENSMUST00000181339 1326 ntTSL 1 (best) BASIC20.21■□□□□ 0.83
Ccl3P10855 Gm20208-202ENSMUST00000219905 1528 ntTSL 1 (best) BASIC20.2■□□□□ 0.82
Ccl3P10855 Kcnj6-201ENSMUST00000095873 1773 ntTSL 1 (best) BASIC20.19■□□□□ 0.82
Ccl3P10855 Tmem189-201ENSMUST00000006587 2329 ntAPPRIS P1 TSL 1 (best) BASIC20.19■□□□□ 0.82
Ccl3P10855 Sox17-202ENSMUST00000116652 1512 ntAPPRIS P1 TSL 1 (best) BASIC20.19■□□□□ 0.82
Ccl3P10855 Mt2-201ENSMUST00000034214 511 ntAPPRIS P1 TSL 1 (best) BASIC20.19■□□□□ 0.82
Ccl3P10855 Tmem70-203ENSMUST00000177501 1636 ntAPPRIS P3 TSL 1 (best) BASIC20.19■□□□□ 0.82
Ccl3P10855 Glrx3-201ENSMUST00000064404 1685 ntAPPRIS P2 TSL 1 (best) BASIC20.19■□□□□ 0.82
Ccl3P10855 Gsc2-201ENSMUST00000012279 1172 ntAPPRIS P1 TSL 1 (best) BASIC20.18■□□□□ 0.82
Ccl3P10855 Arhgap39-204ENSMUST00000176219 542 ntTSL 5 BASIC20.18■□□□□ 0.82
Ccl3P10855 Bri3-201ENSMUST00000056578 955 ntAPPRIS P1 TSL 1 (best) BASIC20.18■□□□□ 0.82
Ccl3P10855 Fam168b-204ENSMUST00000170092 941 ntTSL 5 BASIC20.17■□□□□ 0.82
Ccl3P10855 Srcap-202ENSMUST00000098025 1257 ntTSL 5 BASIC20.17■□□□□ 0.82
Ccl3P10855 Tmem106c-201ENSMUST00000064200 1635 ntAPPRIS P1 TSL 1 (best) BASIC20.16■□□□□ 0.82
Ccl3P10855 Tmpo-203ENSMUST00000092219 1854 ntTSL 1 (best) BASIC20.16■□□□□ 0.82
Ccl3P10855 Socs2-202ENSMUST00000119917 948 ntAPPRIS P1 TSL 1 (best) BASIC20.16■□□□□ 0.82
Ccl3P10855 0610009L18Rik-201ENSMUST00000143813 619 ntTSL 2 BASIC20.16■□□□□ 0.82
Ccl3P10855 Gm28040-202ENSMUST00000184603 890 ntAPPRIS P1 TSL 2 BASIC20.16■□□□□ 0.82
Ccl3P10855 Rps24-207ENSMUST00000224568 714 ntBASIC20.16■□□□□ 0.82
Ccl3P10855 St7-208ENSMUST00000115419 2194 ntTSL 1 (best) BASIC20.16■□□□□ 0.82
Ccl3P10855 Exosc8-201ENSMUST00000029316 1300 ntAPPRIS P1 TSL 1 (best) BASIC20.16■□□□□ 0.82
Ccl3P10855 Fn1-208ENSMUST00000186940 1350 ntTSL 1 (best) BASIC20.16■□□□□ 0.82
Ccl3P10855 Gm20684-201ENSMUST00000176744 380 ntTSL 3 BASIC20.15■□□□□ 0.82
Ccl3P10855 Gm45095-201ENSMUST00000206736 254 ntTSL 5 BASIC20.15■□□□□ 0.82
Ccl3P10855 Ndfip1-201ENSMUST00000025293 930 ntAPPRIS P1 TSL 1 (best) BASIC20.15■□□□□ 0.82
Ccl3P10855 Emid1-201ENSMUST00000062821 1947 ntAPPRIS P2 TSL 1 (best) BASIC20.15■□□□□ 0.82
Ccl3P10855 Ppia-202ENSMUST00000132846 1170 ntAPPRIS P1 TSL 1 (best) BASIC20.14■□□□□ 0.81
Ccl3P10855 Gm16599-201ENSMUST00000148082 1182 ntTSL 1 (best) BASIC20.14■□□□□ 0.81
Ccl3P10855 Hrasls-204ENSMUST00000162747 854 ntAPPRIS P1 TSL 1 (best) BASIC20.14■□□□□ 0.81
Ccl3P10855 Zfp131-206ENSMUST00000223813 2561 ntAPPRIS P3 BASIC20.14■□□□□ 0.81
Ccl3P10855 Gxylt1-202ENSMUST00000057896 1891 ntAPPRIS ALT2 TSL 5 BASIC20.13■□□□□ 0.81
Ccl3P10855 A430027H14Rik-201ENSMUST00000191809 1467 ntBASIC20.13■□□□□ 0.81
Ccl3P10855 Clpp-201ENSMUST00000002735 1207 ntAPPRIS P1 TSL 1 (best) BASIC20.13■□□□□ 0.81
Ccl3P10855 Btg3-201ENSMUST00000023570 1414 ntAPPRIS P1 TSL 1 (best) BASIC20.12■□□□□ 0.81
Ccl3P10855 Pcf11-204ENSMUST00000208058 461 ntTSL 5 BASIC20.12■□□□□ 0.81
Ccl3P10855 Rpl34-201ENSMUST00000062601 624 ntAPPRIS P1 TSL 1 (best) BASIC20.12■□□□□ 0.81
Ccl3P10855 Asf1a-201ENSMUST00000020004 2201 ntAPPRIS P1 TSL 1 (best) BASIC20.12■□□□□ 0.81
Ccl3P10855 Upf3a-201ENSMUST00000043767 2057 ntAPPRIS P1 TSL 1 (best) BASIC20.12■□□□□ 0.81
Ccl3P10855 Gng12-204ENSMUST00000114225 1876 ntAPPRIS P1 TSL 1 (best) BASIC20.11■□□□□ 0.81
Ccl3P10855 March2-203ENSMUST00000172767 1381 ntAPPRIS P1 TSL 1 (best) BASIC20.11■□□□□ 0.81
Ccl3P10855 Susd3-203ENSMUST00000119721 1249 ntAPPRIS ALT2 TSL 1 (best) BASIC20.11■□□□□ 0.81
Ccl3P10855 Zfp346-203ENSMUST00000159278 1253 ntAPPRIS ALT2 TSL 5 BASIC20.11■□□□□ 0.81
Ccl3P10855 Tmem235-201ENSMUST00000093905 1820 ntAPPRIS P1 TSL 5 BASIC20.11■□□□□ 0.81
Ccl3P10855 Tmem238-201ENSMUST00000168578 1375 ntAPPRIS P1 TSL 1 (best) BASIC20.1■□□□□ 0.81
Ccl3P10855 Vmac-201ENSMUST00000067931 2174 ntAPPRIS P3 TSL 1 (best) BASIC20.1■□□□□ 0.81
Ccl3P10855 1700065D16Rik-202ENSMUST00000188975 506 ntTSL 3 BASIC20.1■□□□□ 0.81
Ccl3P10855 St7-205ENSMUST00000081635 2115 ntTSL 1 (best) BASIC20.1■□□□□ 0.81
Ccl3P10855 Klhl25-205ENSMUST00000206019 2299 ntAPPRIS P1 TSL 1 (best) BASIC20.1■□□□□ 0.81
Ccl3P10855 Pmpca-202ENSMUST00000114093 1638 ntTSL 1 (best) BASIC20.09■□□□□ 0.81
Ccl3P10855 Eif5a-213ENSMUST00000164359 1281 ntAPPRIS P1 TSL 5 BASIC20.09■□□□□ 0.81
Ccl3P10855 1700097N02Rik-201ENSMUST00000188852 845 ntTSL 3 BASIC20.09■□□□□ 0.81
Ccl3P10855 Vegfb-201ENSMUST00000025914 1281 ntAPPRIS P3 TSL 1 (best) BASIC20.09■□□□□ 0.81
Ccl3P10855 Vcpkmt-201ENSMUST00000058639 1027 ntAPPRIS P1 TSL 1 (best) BASIC20.09■□□□□ 0.81
Ccl3P10855 Tmem55b-209ENSMUST00000162957 1465 ntTSL 1 (best) BASIC20.09■□□□□ 0.81
Ccl3P10855 Nucks1-203ENSMUST00000189946 2375 ntAPPRIS ALT2 TSL 1 (best) BASIC20.09■□□□□ 0.81
Ccl3P10855 Cldnd1-204ENSMUST00000162057 1540 ntAPPRIS P1 TSL 5 BASIC20.08■□□□□ 0.81
Ccl3P10855 Suds3-201ENSMUST00000086471 2425 ntAPPRIS P3 TSL 1 (best) BASIC20.08■□□□□ 0.8
Ccl3P10855 Preb-209ENSMUST00000202567 1869 ntTSL 1 (best) BASIC20.07■□□□□ 0.8
Ccl3P10855 C1qtnf5-203ENSMUST00000114818 1337 ntAPPRIS P1 TSL 5 BASIC20.07■□□□□ 0.8
Ccl3P10855 Jmjd6-201ENSMUST00000047616 1668 ntAPPRIS P1 TSL 1 (best) BASIC20.07■□□□□ 0.8
Ccl3P10855 Pcsk1n-201ENSMUST00000041096 2193 ntAPPRIS P1 TSL 1 (best) BASIC20.07■□□□□ 0.8
Ccl3P10855 Siah1a-201ENSMUST00000045296 1968 ntAPPRIS P1 TSL 1 (best) BASIC20.07■□□□□ 0.8
Ccl3P10855 Rps19-202ENSMUST00000108429 633 ntAPPRIS P1 TSL 2 BASIC20.07■□□□□ 0.8
Ccl3P10855 Papola-211ENSMUST00000166735 1033 ntTSL 1 (best) BASIC20.07■□□□□ 0.8
Ccl3P10855 Gm45102-201ENSMUST00000207427 857 ntBASIC20.07■□□□□ 0.8
Ccl3P10855 Camk2n2-201ENSMUST00000052939 1291 ntAPPRIS P1 TSL 1 (best) BASIC20.07■□□□□ 0.8
Ccl3P10855 Mpnd-209ENSMUST00000162883 1400 ntTSL 5 BASIC20.07■□□□□ 0.8
Ccl3P10855 Metrnl-201ENSMUST00000036742 1401 ntAPPRIS P2 TSL 1 (best) BASIC20.07■□□□□ 0.8
Ccl3P10855 Msto1-202ENSMUST00000126245 1875 ntAPPRIS P1 TSL 1 (best) BASIC20.07■□□□□ 0.8
Ccl3P10855 Srcap-211ENSMUST00000189136 1960 ntTSL 1 (best) BASIC20.06■□□□□ 0.8
Ccl3P10855 Fam149b-203ENSMUST00000090499 2370 ntAPPRIS P4 TSL 1 (best) BASIC20.06■□□□□ 0.8
Ccl3P10855 Usf2-203ENSMUST00000162228 960 ntTSL 5 BASIC20.06■□□□□ 0.8
Ccl3P10855 Adat3-204ENSMUST00000038411 1411 ntAPPRIS P1 TSL 2 BASIC20.06■□□□□ 0.8
Ccl3P10855 Hrh3-205ENSMUST00000165762 1368 ntAPPRIS ALT2 TSL 5 BASIC20.06■□□□□ 0.8
Ccl3P10855 Ffar4-201ENSMUST00000067098 1393 ntAPPRIS P1 TSL 1 (best) BASIC20.06■□□□□ 0.8
Retrieved 100 of 76,532 protein–RNA pairs in 11.8 ms