Protein–RNA interactions for Protein: O54879

Hmgb3, High mobility group protein B3, mousemouse

Known RBP Predictions only

Length 200 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Hmgb3O54879 Cpsf4-205ENSMUST00000160629 1713 ntAPPRIS ALT1 TSL 1 (best) BASIC18.67■□□□□ 0.58
Hmgb3O54879 Jag1-201ENSMUST00000028735 5612 ntAPPRIS P1 TSL 1 (best) BASIC18.67■□□□□ 0.58
Hmgb3O54879 Klc1-201ENSMUST00000084941 2504 ntAPPRIS P3 TSL 1 (best) BASIC18.67■□□□□ 0.58
Hmgb3O54879 Arhgap23-202ENSMUST00000107601 5450 ntTSL 5 BASIC18.67■□□□□ 0.58
Hmgb3O54879 Fgf20-201ENSMUST00000034014 1476 ntAPPRIS P1 TSL 1 (best) BASIC18.66■□□□□ 0.58
Hmgb3O54879 Hoxb9-201ENSMUST00000000010 2574 ntAPPRIS P1 TSL 1 (best) BASIC18.66■□□□□ 0.58
Hmgb3O54879 Srp9-202ENSMUST00000111018 823 ntTSL 1 (best) BASIC18.66■□□□□ 0.58
Hmgb3O54879 Stim2-201ENSMUST00000117661 4934 ntAPPRIS P2 TSL 1 (best) BASIC18.66■□□□□ 0.58
Hmgb3O54879 Nfix-204ENSMUST00000109764 5476 ntTSL 1 (best) BASIC18.65■□□□□ 0.58
Hmgb3O54879 Gm266-201ENSMUST00000010673 1215 ntAPPRIS P1 BASIC18.65■□□□□ 0.58
Hmgb3O54879 Ccdc9-201ENSMUST00000041010 2379 ntAPPRIS P3 TSL 1 (best) BASIC18.65■□□□□ 0.58
Hmgb3O54879 Ccdc142-201ENSMUST00000101254 2317 ntAPPRIS P1 TSL 5 BASIC18.65■□□□□ 0.58
Hmgb3O54879 Apcdd1-201ENSMUST00000096554 2799 ntAPPRIS P1 TSL 1 (best) BASIC18.64■□□□□ 0.58
Hmgb3O54879 Ptpn4-203ENSMUST00000163435 2365 ntTSL 1 (best) BASIC18.64■□□□□ 0.58
Hmgb3O54879 Lmo4-201ENSMUST00000120539 1669 ntAPPRIS P1 TSL 1 (best) BASIC18.64■□□□□ 0.57
Hmgb3O54879 Insm2-201ENSMUST00000051857 2660 ntAPPRIS P1 BASIC18.64■□□□□ 0.57
Hmgb3O54879 2310014F06Rik-201ENSMUST00000146145 1567 ntTSL 1 (best) BASIC18.64■□□□□ 0.57
Hmgb3O54879 Gnl1-201ENSMUST00000087200 2848 ntAPPRIS P1 TSL 1 (best) BASIC18.63■□□□□ 0.57
Hmgb3O54879 Mid2-201ENSMUST00000112988 2525 ntTSL 5 BASIC18.63■□□□□ 0.57
Hmgb3O54879 Pex10-201ENSMUST00000103180 1688 ntAPPRIS P1 TSL 1 (best) BASIC18.63■□□□□ 0.57
Hmgb3O54879 Ihh-201ENSMUST00000164097 2468 ntAPPRIS P1 TSL 1 (best) BASIC18.62■□□□□ 0.57
Hmgb3O54879 Slc16a11-211ENSMUST00000171032 1754 ntAPPRIS P1 TSL 5 BASIC18.62■□□□□ 0.57
Hmgb3O54879 Nxph3-201ENSMUST00000058866 2099 ntAPPRIS P1 TSL 1 (best) BASIC18.62■□□□□ 0.57
Hmgb3O54879 Arhgef25-205ENSMUST00000218654 2475 ntTSL 5 BASIC18.62■□□□□ 0.57
Hmgb3O54879 Shank1-203ENSMUST00000107938 9826 ntAPPRIS P2 TSL 5 BASIC18.62■□□□□ 0.57
Hmgb3O54879 Tmem260-209ENSMUST00000226422 6333 ntAPPRIS ALT2 BASIC18.61■□□□□ 0.57
Hmgb3O54879 Sel1l3-201ENSMUST00000031090 4512 ntAPPRIS P1 TSL 1 (best) BASIC18.61■□□□□ 0.57
Hmgb3O54879 Hgh1-201ENSMUST00000023213 1959 ntAPPRIS P1 TSL 1 (best) BASIC18.61■□□□□ 0.57
Hmgb3O54879 Gm26508-201ENSMUST00000181285 1516 ntTSL 5 BASIC18.61■□□□□ 0.57
Hmgb3O54879 Zmynd12-201ENSMUST00000094819 1464 ntAPPRIS P1 TSL 1 (best) BASIC18.61■□□□□ 0.57
Hmgb3O54879 Gm24804-201ENSMUST00000174982 85 ntBASIC18.61■□□□□ 0.57
Hmgb3O54879 Gm26617-201ENSMUST00000180381 4429 ntTSL 3 BASIC18.61■□□□□ 0.57
Hmgb3O54879 Frmd5-201ENSMUST00000110592 2222 ntAPPRIS P1 TSL 5 BASIC18.61■□□□□ 0.57
Hmgb3O54879 Arrb1-210ENSMUST00000179755 7135 ntTSL 5 BASIC18.61■□□□□ 0.57
Hmgb3O54879 Arrb1-202ENSMUST00000098266 7132 ntAPPRIS P1 TSL 1 (best) BASIC18.61■□□□□ 0.57
Hmgb3O54879 Ptx3-201ENSMUST00000029421 1898 ntAPPRIS P1 TSL 1 (best) BASIC18.6■□□□□ 0.57
Hmgb3O54879 Gls-202ENSMUST00000114510 5596 ntAPPRIS ALT2 TSL 1 (best) BASIC18.6■□□□□ 0.57
Hmgb3O54879 Inafm2-201ENSMUST00000149978 3053 ntAPPRIS P1 BASIC18.6■□□□□ 0.57
Hmgb3O54879 Nrxn1-213ENSMUST00000172466 2477 ntTSL 5 BASIC18.6■□□□□ 0.57
Hmgb3O54879 Med25-205ENSMUST00000207278 2287 ntTSL 1 (best) BASIC18.6■□□□□ 0.57
Hmgb3O54879 Mafg-201ENSMUST00000058162 4923 ntAPPRIS P1 TSL 1 (best) BASIC18.6■□□□□ 0.57
Hmgb3O54879 Ttc9-201ENSMUST00000036116 2042 ntAPPRIS P1 TSL 1 (best) BASIC18.6■□□□□ 0.57
Hmgb3O54879 Esrra-201ENSMUST00000025906 2242 ntAPPRIS P1 TSL 1 (best) BASIC18.59■□□□□ 0.57
Hmgb3O54879 Ube2e3-201ENSMUST00000028398 2249 ntAPPRIS P1 TSL 1 (best) BASIC18.59■□□□□ 0.57
Hmgb3O54879 Zc3hav1l-201ENSMUST00000058524 6536 ntAPPRIS P1 TSL 1 (best) BASIC18.58■□□□□ 0.57
Hmgb3O54879 Sema6d-203ENSMUST00000077847 6444 ntTSL 5 BASIC18.58■□□□□ 0.57
Hmgb3O54879 Ing1-201ENSMUST00000054399 2814 ntAPPRIS P1 TSL 1 (best) BASIC18.58■□□□□ 0.57
Hmgb3O54879 Dact1-202ENSMUST00000150639 2448 ntAPPRIS P1 TSL 3 BASIC18.58■□□□□ 0.57
Hmgb3O54879 Spsb3-202ENSMUST00000068508 2004 ntTSL 1 (best) BASIC18.58■□□□□ 0.56
Hmgb3O54879 Mkrn1-203ENSMUST00000114822 751 ntTSL 1 (best) BASIC18.58■□□□□ 0.56
Hmgb3O54879 Ttc7b-201ENSMUST00000062957 3446 ntAPPRIS P1 TSL 1 (best) BASIC18.58■□□□□ 0.56
Hmgb3O54879 Wnt5b-203ENSMUST00000119369 2339 ntTSL 1 (best) BASIC18.58■□□□□ 0.56
Hmgb3O54879 Gas7-203ENSMUST00000108681 1595 ntAPPRIS ALT2 TSL 5 BASIC18.58■□□□□ 0.56
Hmgb3O54879 Hmx3-201ENSMUST00000046093 1457 ntAPPRIS P1 TSL 1 (best) BASIC18.58■□□□□ 0.56
Hmgb3O54879 Upf3a-201ENSMUST00000043767 2057 ntAPPRIS P1 TSL 1 (best) BASIC18.58■□□□□ 0.56
Hmgb3O54879 Znrf1-204ENSMUST00000171182 5466 ntTSL 3 BASIC18.57■□□□□ 0.56
Hmgb3O54879 Ppp2ca-201ENSMUST00000020608 7102 ntAPPRIS P1 TSL 1 (best) BASIC18.57■□□□□ 0.56
Hmgb3O54879 Ltbp4-205ENSMUST00000121175 5118 ntAPPRIS ALT2 TSL 1 (best) BASIC18.57■□□□□ 0.56
Hmgb3O54879 Nsun2-208ENSMUST00000176485 2408 ntAPPRIS ALT2 TSL 5 BASIC18.57■□□□□ 0.56
Hmgb3O54879 Fance-203ENSMUST00000114803 1980 ntTSL 1 (best) BASIC18.57■□□□□ 0.56
Hmgb3O54879 Hdgfl3-202ENSMUST00000107305 5887 ntAPPRIS P2 TSL 1 (best) BASIC18.57■□□□□ 0.56
Hmgb3O54879 Ppp1r12c-201ENSMUST00000013886 2983 ntAPPRIS P1 TSL 1 (best) BASIC18.57■□□□□ 0.56
Hmgb3O54879 Tnks-201ENSMUST00000033929 9163 ntAPPRIS P1 TSL 1 (best) BASIC18.57■□□□□ 0.56
Hmgb3O54879 Prph-202ENSMUST00000047104 1865 ntAPPRIS P3 TSL 1 (best) BASIC18.56■□□□□ 0.56
Hmgb3O54879 Cpsf4-201ENSMUST00000070487 1606 ntTSL 1 (best) BASIC18.56■□□□□ 0.56
Hmgb3O54879 Coro1b-201ENSMUST00000008893 1888 ntAPPRIS P1 TSL 1 (best) BASIC18.56■□□□□ 0.56
Hmgb3O54879 Ube2g2-204ENSMUST00000174510 2031 ntAPPRIS P1 TSL 1 (best) BASIC18.56■□□□□ 0.56
Hmgb3O54879 Mppe1-201ENSMUST00000073054 2007 ntAPPRIS P1 TSL 1 (best) BASIC18.56■□□□□ 0.56
Hmgb3O54879 Map3k15-201ENSMUST00000033665 4348 ntAPPRIS P1 TSL 5 BASIC18.56■□□□□ 0.56
Hmgb3O54879 Yif1b-202ENSMUST00000108237 1086 ntTSL 5 BASIC18.56■□□□□ 0.56
Hmgb3O54879 Dnttip1-202ENSMUST00000109326 476 ntTSL 1 (best) BASIC18.56■□□□□ 0.56
Hmgb3O54879 Tmem143-201ENSMUST00000069772 2297 ntAPPRIS P1 TSL 1 (best) BASIC18.56■□□□□ 0.56
Hmgb3O54879 Pde7a-202ENSMUST00000099195 6298 ntAPPRIS ALT1 TSL 1 (best) BASIC18.56■□□□□ 0.56
Hmgb3O54879 Ltk-205ENSMUST00000140224 2240 ntAPPRIS ALT2 TSL 1 (best) BASIC18.55■□□□□ 0.56
Hmgb3O54879 Ltk-206ENSMUST00000182203 2232 ntAPPRIS ALT2 TSL 1 (best) BASIC18.55■□□□□ 0.56
Hmgb3O54879 Abhd13-202ENSMUST00000139793 5191 ntAPPRIS P1 TSL 2 BASIC18.55■□□□□ 0.56
Hmgb3O54879 Pax1-201ENSMUST00000109968 2643 ntAPPRIS P1 TSL 1 (best) BASIC18.55■□□□□ 0.56
Hmgb3O54879 Lrrc59-201ENSMUST00000021239 2837 ntAPPRIS P1 TSL 1 (best) BASIC18.55■□□□□ 0.56
Hmgb3O54879 Rasa1-201ENSMUST00000109552 4563 ntAPPRIS P1 TSL 1 (best) BASIC18.55■□□□□ 0.56
Hmgb3O54879 Hmgxb3-201ENSMUST00000091884 5101 ntAPPRIS P1 TSL 1 (best) BASIC18.55■□□□□ 0.56
Hmgb3O54879 Arid1b-201ENSMUST00000092723 7150 ntAPPRIS ALT2 TSL 5 BASIC18.55■□□□□ 0.56
Hmgb3O54879 P4ha3-201ENSMUST00000057023 2361 ntAPPRIS P1 TSL 1 (best) BASIC18.55■□□□□ 0.56
Hmgb3O54879 Dtx4-201ENSMUST00000045521 5765 ntAPPRIS P1 TSL 1 (best) BASIC18.55■□□□□ 0.56
Hmgb3O54879 Ing2-201ENSMUST00000080353 2812 ntAPPRIS P1 TSL 1 (best) BASIC18.55■□□□□ 0.56
Hmgb3O54879 Neurl4-213ENSMUST00000177476 4952 ntAPPRIS ALT2 TSL 1 (best) BASIC18.54■□□□□ 0.56
Hmgb3O54879 Gm37847-201ENSMUST00000192163 1497 ntBASIC18.54■□□□□ 0.56
Hmgb3O54879 Gm31748-201ENSMUST00000194938 1497 ntBASIC18.54■□□□□ 0.56
Hmgb3O54879 Zxdc-201ENSMUST00000045740 1612 ntAPPRIS ALT2 TSL 1 (best) BASIC18.54■□□□□ 0.56
Hmgb3O54879 A330041J22Rik-201ENSMUST00000150367 1825 ntTSL 1 (best) BASIC18.53■□□□□ 0.56
Hmgb3O54879 Igfbp3-201ENSMUST00000020702 2421 ntAPPRIS P1 TSL 1 (best) BASIC18.53■□□□□ 0.56
Hmgb3O54879 Grin2c-202ENSMUST00000106554 4895 ntAPPRIS P1 TSL 5 BASIC18.53■□□□□ 0.56
Hmgb3O54879 Nrarp-201ENSMUST00000104999 2582 ntAPPRIS P1 BASIC18.53■□□□□ 0.56
Hmgb3O54879 Actr5-201ENSMUST00000045644 2402 ntAPPRIS P1 TSL 1 (best) BASIC18.53■□□□□ 0.56
Hmgb3O54879 Pdss1-201ENSMUST00000053729 1642 ntAPPRIS P1 TSL 1 (best) BASIC18.52■□□□□ 0.56
Hmgb3O54879 Gm5784-202ENSMUST00000220896 2016 ntTSL 1 (best) BASIC18.52■□□□□ 0.56
Hmgb3O54879 Btbd2-202ENSMUST00000126980 2449 ntAPPRIS ALT2 TSL 5 BASIC18.52■□□□□ 0.56
Hmgb3O54879 Traf3-203ENSMUST00000117269 6972 ntTSL 1 (best) BASIC18.52■□□□□ 0.56
Hmgb3O54879 Tmeff1-202ENSMUST00000123476 1224 ntAPPRIS P1 TSL 1 (best) BASIC18.52■□□□□ 0.56
Hmgb3O54879 Zdhhc2-202ENSMUST00000128166 1547 ntAPPRIS P1 TSL 1 (best) BASIC18.52■□□□□ 0.56
Hmgb3O54879 2410017I17Rik-201ENSMUST00000056774 1509 ntTSL 5 BASIC18.52■□□□□ 0.56
Retrieved 100 of 76,532 protein–RNA pairs in 46.7 ms