Protein–RNA interactions for Protein: A0A0B4J1J9

Trav11, T cell receptor alpha variable 11 (Fragment), mousemouse

Predictions only

Length 114 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Trav11A0A0B4J1J9 2310061I04Rik-202ENSMUST00000146451 2081 ntTSL 1 (best) BASIC15.41■□□□□ 0.06
Trav11A0A0B4J1J9 Nsun2-208ENSMUST00000176485 2408 ntAPPRIS ALT2 TSL 5 BASIC15.41■□□□□ 0.06
Trav11A0A0B4J1J9 AW121686-201ENSMUST00000181049 2200 ntTSL 1 (best) BASIC15.41■□□□□ 0.06
Trav11A0A0B4J1J9 Fbxl14-201ENSMUST00000032094 2963 ntAPPRIS P1 BASIC15.41■□□□□ 0.06
Trav11A0A0B4J1J9 Upf3a-201ENSMUST00000043767 2057 ntAPPRIS P1 TSL 1 (best) BASIC15.4■□□□□ 0.06
Trav11A0A0B4J1J9 Slc17a7-201ENSMUST00000085374 2915 ntAPPRIS P1 TSL 1 (best) BASIC15.4■□□□□ 0.06
Trav11A0A0B4J1J9 2410022M11Rik-201ENSMUST00000186474 1911 ntBASIC15.4■□□□□ 0.06
Trav11A0A0B4J1J9 Ltbp3-201ENSMUST00000081496 5190 ntAPPRIS P1 TSL 5 BASIC15.4■□□□□ 0.06
Trav11A0A0B4J1J9 Fbxl17-201ENSMUST00000024761 4925 ntAPPRIS P1 TSL 1 (best) BASIC15.4■□□□□ 0.06
Trav11A0A0B4J1J9 Barhl1-202ENSMUST00000113847 2160 ntAPPRIS P1 TSL 1 (best) BASIC15.39■□□□□ 0.05
Trav11A0A0B4J1J9 Dcaf15-201ENSMUST00000041367 2312 ntTSL 1 (best) BASIC15.39■□□□□ 0.05
Trav11A0A0B4J1J9 Dbndd2-202ENSMUST00000069385 1658 ntAPPRIS P1 TSL 1 (best) BASIC15.39■□□□□ 0.05
Trav11A0A0B4J1J9 Epb41l4b-201ENSMUST00000030142 3247 ntAPPRIS P2 TSL 1 (best) BASIC15.39■□□□□ 0.05
Trav11A0A0B4J1J9 Atn1-201ENSMUST00000088357 4433 ntAPPRIS P1 TSL 1 (best) BASIC15.39■□□□□ 0.05
Trav11A0A0B4J1J9 Arglu1-201ENSMUST00000048545 3197 ntAPPRIS P1 TSL 2 BASIC15.39■□□□□ 0.05
Trav11A0A0B4J1J9 Ube2e3-201ENSMUST00000028398 2249 ntAPPRIS P1 TSL 1 (best) BASIC15.39■□□□□ 0.05
Trav11A0A0B4J1J9 Capza2-201ENSMUST00000015877 2537 ntAPPRIS P1 TSL 1 (best) BASIC15.39■□□□□ 0.05
Trav11A0A0B4J1J9 Insm2-201ENSMUST00000051857 2660 ntAPPRIS P1 BASIC15.39■□□□□ 0.05
Trav11A0A0B4J1J9 Serpinb6a-206ENSMUST00000167163 1654 ntAPPRIS P1 TSL 5 BASIC15.38■□□□□ 0.05
Trav11A0A0B4J1J9 Ccdc122-201ENSMUST00000048208 1721 ntAPPRIS P3 TSL 1 (best) BASIC15.38■□□□□ 0.05
Trav11A0A0B4J1J9 Terf2-204ENSMUST00000133925 2666 ntAPPRIS P3 TSL 1 (best) BASIC15.38■□□□□ 0.05
Trav11A0A0B4J1J9 Nrsn1-201ENSMUST00000057866 2222 ntAPPRIS P1 TSL 1 (best) BASIC15.38■□□□□ 0.05
Trav11A0A0B4J1J9 1810026B05Rik-202ENSMUST00000184554 782 ntTSL 3 BASIC15.38■□□□□ 0.05
Trav11A0A0B4J1J9 Gmeb1-202ENSMUST00000105964 1925 ntAPPRIS P1 TSL 1 (best) BASIC15.38■□□□□ 0.05
Trav11A0A0B4J1J9 A230005M16Rik-201ENSMUST00000137661 1605 ntTSL 1 (best) BASIC15.38■□□□□ 0.05
Trav11A0A0B4J1J9 Whrn-202ENSMUST00000063672 2804 ntTSL 1 (best) BASIC15.38■□□□□ 0.05
Trav11A0A0B4J1J9 Papd7-202ENSMUST00000198607 4750 ntAPPRIS ALT2 TSL 1 (best) BASIC15.37■□□□□ 0.05
Trav11A0A0B4J1J9 Abhd17c-201ENSMUST00000117085 2238 ntAPPRIS P1 TSL 1 (best) BASIC15.37■□□□□ 0.05
Trav11A0A0B4J1J9 Med25-205ENSMUST00000207278 2287 ntTSL 1 (best) BASIC15.37■□□□□ 0.05
Trav11A0A0B4J1J9 Tmem55b-201ENSMUST00000049312 1594 ntAPPRIS ALT1 TSL 1 (best) BASIC15.37■□□□□ 0.05
Trav11A0A0B4J1J9 Homer3-203ENSMUST00000110124 2445 ntAPPRIS ALT1 TSL 5 BASIC15.37■□□□□ 0.05
Trav11A0A0B4J1J9 Brf1-201ENSMUST00000011302 2615 ntAPPRIS P1 TSL 5 BASIC15.37■□□□□ 0.05
Trav11A0A0B4J1J9 Klc1-201ENSMUST00000084941 2504 ntAPPRIS P3 TSL 1 (best) BASIC15.37■□□□□ 0.05
Trav11A0A0B4J1J9 Stambp-207ENSMUST00000206592 2152 ntAPPRIS P1 TSL 1 (best) BASIC15.36■□□□□ 0.05
Trav11A0A0B4J1J9 Lrrc14-201ENSMUST00000036423 2093 ntAPPRIS P1 TSL 1 (best) BASIC15.36■□□□□ 0.05
Trav11A0A0B4J1J9 Sorcs2-202ENSMUST00000070720 2089 ntTSL 1 (best) BASIC15.36■□□□□ 0.05
Trav11A0A0B4J1J9 Glrx3-201ENSMUST00000064404 1685 ntAPPRIS P2 TSL 1 (best) BASIC15.36■□□□□ 0.05
Trav11A0A0B4J1J9 Cenpb-201ENSMUST00000089510 4886 ntAPPRIS P1 BASIC15.36■□□□□ 0.05
Trav11A0A0B4J1J9 AC117232.3-201ENSMUST00000217817 338 ntTSL 2 BASIC15.36■□□□□ 0.05
Trav11A0A0B4J1J9 Rfxap-201ENSMUST00000044373 2162 ntAPPRIS ALT2 TSL 1 (best) BASIC15.36■□□□□ 0.05
Trav11A0A0B4J1J9 Purg-202ENSMUST00000078058 1795 ntTSL 1 (best) BASIC15.36■□□□□ 0.05
Trav11A0A0B4J1J9 Phactr2-202ENSMUST00000105543 2735 ntAPPRIS P2 TSL 1 (best) BASIC15.36■□□□□ 0.05
Trav11A0A0B4J1J9 Msl1-203ENSMUST00000107485 2091 ntTSL 1 (best) BASIC15.36■□□□□ 0.05
Trav11A0A0B4J1J9 Ing1-201ENSMUST00000054399 2814 ntAPPRIS P1 TSL 1 (best) BASIC15.35■□□□□ 0.05
Trav11A0A0B4J1J9 Gnl1-201ENSMUST00000087200 2848 ntAPPRIS P1 TSL 1 (best) BASIC15.35■□□□□ 0.05
Trav11A0A0B4J1J9 Bean1-205ENSMUST00000212979 2131 ntAPPRIS P4 TSL 5 BASIC15.35■□□□□ 0.05
Trav11A0A0B4J1J9 Nudt9-201ENSMUST00000031250 1488 ntAPPRIS P1 TSL 1 (best) BASIC15.35■□□□□ 0.05
Trav11A0A0B4J1J9 Mid2-201ENSMUST00000112988 2525 ntTSL 5 BASIC15.35■□□□□ 0.05
Trav11A0A0B4J1J9 Lrrc59-201ENSMUST00000021239 2837 ntAPPRIS P1 TSL 1 (best) BASIC15.35■□□□□ 0.05
Trav11A0A0B4J1J9 Hibadh-201ENSMUST00000031788 1825 ntAPPRIS P1 TSL 1 (best) BASIC15.35■□□□□ 0.05
Trav11A0A0B4J1J9 Cnnm1-201ENSMUST00000165311 5037 ntAPPRIS P2 TSL 1 (best) BASIC15.35■□□□□ 0.05
Trav11A0A0B4J1J9 Gng12-204ENSMUST00000114225 1876 ntAPPRIS P1 TSL 1 (best) BASIC15.35■□□□□ 0.05
Trav11A0A0B4J1J9 Hcn4-201ENSMUST00000034889 6118 ntAPPRIS P1 TSL 1 (best) BASIC15.35■□□□□ 0.05
Trav11A0A0B4J1J9 Nup153-201ENSMUST00000021803 6109 ntAPPRIS P1 TSL 1 (best) BASIC15.34■□□□□ 0.05
Trav11A0A0B4J1J9 Luc7l3-203ENSMUST00000107821 2050 ntAPPRIS P1 TSL 5 BASIC15.34■□□□□ 0.05
Trav11A0A0B4J1J9 Grb2-201ENSMUST00000021090 2709 ntAPPRIS P1 TSL 1 (best) BASIC15.34■□□□□ 0.05
Trav11A0A0B4J1J9 Rundc3a-203ENSMUST00000107103 1822 ntTSL 5 BASIC15.34■□□□□ 0.05
Trav11A0A0B4J1J9 Nrxn1-213ENSMUST00000172466 2477 ntTSL 5 BASIC15.34■□□□□ 0.05
Trav11A0A0B4J1J9 Tdp2-203ENSMUST00000223804 1136 ntBASIC15.34■□□□□ 0.05
Trav11A0A0B4J1J9 1110008F13Rik-201ENSMUST00000029165 1045 ntAPPRIS P1 TSL 1 (best) BASIC15.34■□□□□ 0.05
Trav11A0A0B4J1J9 Cbx4-201ENSMUST00000026665 5179 ntAPPRIS P1 TSL 1 (best) BASIC15.34■□□□□ 0.05
Trav11A0A0B4J1J9 Npas1-201ENSMUST00000002053 2091 ntAPPRIS P1 TSL 5 BASIC15.34■□□□□ 0.05
Trav11A0A0B4J1J9 Crip2-201ENSMUST00000084882 1439 ntAPPRIS P1 TSL 1 (best) BASIC15.34■□□□□ 0.05
Trav11A0A0B4J1J9 Atp2b2-208ENSMUST00000205052 5658 ntTSL 1 (best) BASIC15.33■□□□□ 0.05
Trav11A0A0B4J1J9 Gipc1-201ENSMUST00000019577 1522 ntAPPRIS P1 TSL 1 (best) BASIC15.33■□□□□ 0.05
Trav11A0A0B4J1J9 Btbd2-202ENSMUST00000126980 2449 ntAPPRIS ALT2 TSL 5 BASIC15.33■□□□□ 0.04
Trav11A0A0B4J1J9 Gm14121-201ENSMUST00000121441 1380 ntBASIC15.33■□□□□ 0.04
Trav11A0A0B4J1J9 Cbln2-203ENSMUST00000122464 1907 ntAPPRIS P1 TSL 1 (best) BASIC15.33■□□□□ 0.04
Trav11A0A0B4J1J9 Terf2-202ENSMUST00000068421 2667 ntAPPRIS ALT2 TSL 5 BASIC15.32■□□□□ 0.04
Trav11A0A0B4J1J9 Usp21-203ENSMUST00000111306 2185 ntAPPRIS ALT1 TSL 1 (best) BASIC15.32■□□□□ 0.04
Trav11A0A0B4J1J9 Kmt5a-201ENSMUST00000059580 2739 ntAPPRIS P1 TSL 1 (best) BASIC15.32■□□□□ 0.04
Trav11A0A0B4J1J9 Ccdc50-202ENSMUST00000096127 1096 ntTSL 1 (best) BASIC15.32■□□□□ 0.04
Trav11A0A0B4J1J9 E330009J07Rik-201ENSMUST00000039008 1949 ntTSL 1 (best) BASIC15.32■□□□□ 0.04
Trav11A0A0B4J1J9 Sel1l3-201ENSMUST00000031090 4512 ntAPPRIS P1 TSL 1 (best) BASIC15.32■□□□□ 0.04
Trav11A0A0B4J1J9 Gm26617-201ENSMUST00000180381 4429 ntTSL 3 BASIC15.32■□□□□ 0.04
Trav11A0A0B4J1J9 Cntln-202ENSMUST00000102819 2239 ntAPPRIS P3 TSL 1 (best) BASIC15.32■□□□□ 0.04
Trav11A0A0B4J1J9 Ltk-205ENSMUST00000140224 2240 ntAPPRIS ALT2 TSL 1 (best) BASIC15.32■□□□□ 0.04
Trav11A0A0B4J1J9 Ltk-206ENSMUST00000182203 2232 ntAPPRIS ALT2 TSL 1 (best) BASIC15.32■□□□□ 0.04
Trav11A0A0B4J1J9 Serpinb6a-201ENSMUST00000017188 1504 ntTSL 1 (best) BASIC15.32■□□□□ 0.04
Trav11A0A0B4J1J9 Rnf39-201ENSMUST00000040498 1579 ntAPPRIS P1 TSL 1 (best) BASIC15.32■□□□□ 0.04
Trav11A0A0B4J1J9 P4ha3-201ENSMUST00000057023 2361 ntAPPRIS P1 TSL 1 (best) BASIC15.32■□□□□ 0.04
Trav11A0A0B4J1J9 Trim33-202ENSMUST00000106860 5025 ntAPPRIS ALT2 TSL 1 (best) BASIC15.32■□□□□ 0.04
Trav11A0A0B4J1J9 Tmem9b-201ENSMUST00000033333 1703 ntAPPRIS P2 TSL 1 (best) BASIC15.31■□□□□ 0.04
Trav11A0A0B4J1J9 Phf23-201ENSMUST00000018716 2006 ntAPPRIS P3 TSL 1 (best) BASIC15.31■□□□□ 0.04
Trav11A0A0B4J1J9 Dut-202ENSMUST00000082122 1020 ntTSL 1 (best) BASIC15.31■□□□□ 0.04
Trav11A0A0B4J1J9 Jmjd6-201ENSMUST00000047616 1668 ntAPPRIS P1 TSL 1 (best) BASIC15.31■□□□□ 0.04
Trav11A0A0B4J1J9 Emc10-202ENSMUST00000118808 1872 ntAPPRIS P2 TSL 1 (best) BASIC15.31■□□□□ 0.04
Trav11A0A0B4J1J9 Arrdc2-201ENSMUST00000002989 2355 ntAPPRIS P1 TSL 1 (best) BASIC15.31■□□□□ 0.04
Trav11A0A0B4J1J9 Slc16a11-205ENSMUST00000126388 1938 ntAPPRIS P1 TSL 5 BASIC15.3■□□□□ 0.04
Trav11A0A0B4J1J9 B3gat1-203ENSMUST00000159799 2021 ntTSL 1 (best) BASIC15.3■□□□□ 0.04
Trav11A0A0B4J1J9 3110021N24Rik-201ENSMUST00000178992 1812 ntAPPRIS P1 TSL 5 BASIC15.3■□□□□ 0.04
Trav11A0A0B4J1J9 Ubl3-204ENSMUST00000201595 2064 ntAPPRIS P1 TSL 2 BASIC15.3■□□□□ 0.04
Trav11A0A0B4J1J9 Gm45855-201ENSMUST00000212546 880 ntBASIC15.3■□□□□ 0.04
Trav11A0A0B4J1J9 Vmac-201ENSMUST00000067931 2174 ntAPPRIS P3 TSL 1 (best) BASIC15.3■□□□□ 0.04
Trav11A0A0B4J1J9 Flot2-201ENSMUST00000072289 2621 ntAPPRIS P2 TSL 1 (best) BASIC15.3■□□□□ 0.04
Trav11A0A0B4J1J9 Apcdd1-201ENSMUST00000096554 2799 ntAPPRIS P1 TSL 1 (best) BASIC15.3■□□□□ 0.04
Trav11A0A0B4J1J9 Porcn-201ENSMUST00000077595 1872 ntAPPRIS P4 TSL 1 (best) BASIC15.29■□□□□ 0.04
Trav11A0A0B4J1J9 Porcn-204ENSMUST00000089403 1854 ntAPPRIS ALT1 TSL 1 (best) BASIC15.29■□□□□ 0.04
Trav11A0A0B4J1J9 Nckap5los-201ENSMUST00000159738 1712 ntTSL 2 BASIC15.29■□□□□ 0.04
Trav11A0A0B4J1J9 Jak2-202ENSMUST00000065796 5030 ntAPPRIS P1 TSL 5 BASIC15.29■□□□□ 0.04
Retrieved 100 of 76,532 protein–RNA pairs in 75.5 ms