Protein–RNA interactions for Protein: Q96AY4

TTC28, Tetratricopeptide repeat protein 28, humanhuman

Predictions only

Length 2,481 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TTC28Q96AY4 DDX55-205ENST00000538744 1735 ntTSL 5 BASIC18.25■□□□□ 0.51
TTC28Q96AY4 SWSAP1-201ENST00000312423 1684 ntAPPRIS P1 TSL 1 (best) BASIC18.25■□□□□ 0.51
TTC28Q96AY4 TEAD2-203ENST00000539846 1444 ntTSL 2 BASIC18.25■□□□□ 0.51
TTC28Q96AY4 FO538757.1-201ENST00000623083 1397 ntBASIC18.25■□□□□ 0.51
TTC28Q96AY4 EXOSC5-201ENST00000221233 1118 ntAPPRIS P1 TSL 1 (best) BASIC18.25■□□□□ 0.51
TTC28Q96AY4 AC125807.1-201ENST00000483097 614 ntBASIC18.25■□□□□ 0.51
TTC28Q96AY4 MTFR1L-218ENST00000526894 733 ntTSL 4 BASIC18.25■□□□□ 0.51
TTC28Q96AY4 GPER1-207ENST00000619052 571 ntTSL 2 BASIC18.25■□□□□ 0.51
TTC28Q96AY4 AL805961.1-202ENST00000641562 540 ntBASIC18.25■□□□□ 0.51
TTC28Q96AY4 LINC00602-201ENST00000629776 2065 ntBASIC18.25■□□□□ 0.51
TTC28Q96AY4 RAB5C-202ENST00000393860 1912 ntAPPRIS P1 TSL 1 (best) BASIC18.25■□□□□ 0.51
TTC28Q96AY4 C16orf59-204ENST00000563531 1864 ntAPPRIS ALT2 TSL 5 BASIC18.25■□□□□ 0.51
TTC28Q96AY4 ILDR2-206ENST00000528703 2446 ntAPPRIS ALT2 TSL 5 BASIC18.25■□□□□ 0.51
TTC28Q96AY4 PRKAR1B-211ENST00000537384 2533 ntAPPRIS P1 TSL 5 BASIC18.25■□□□□ 0.51
TTC28Q96AY4 SPAG11A-201ENST00000326558 612 ntTSL 1 (best) BASIC18.25■□□□□ 0.51
TTC28Q96AY4 TNFRSF14-202ENST00000409119 896 ntAPPRIS ALT2 TSL 3 BASIC18.25■□□□□ 0.51
TTC28Q96AY4 SPTLC1P1-201ENST00000447199 261 ntBASIC18.25■□□□□ 0.51
TTC28Q96AY4 AC124944.1-201ENST00000448113 625 ntTSL 2 BASIC18.25■□□□□ 0.51
TTC28Q96AY4 FAM162A-202ENST00000469967 1015 ntTSL 2 BASIC18.25■□□□□ 0.51
TTC28Q96AY4 BAD-207ENST00000544785 525 ntTSL 3 BASIC18.25■□□□□ 0.51
TTC28Q96AY4 MIR4538-201ENST00000581377 78 ntBASIC18.25■□□□□ 0.51
TTC28Q96AY4 OAZ1-202ENST00000582888 969 ntAPPRIS ALT1 TSL 5 BASIC18.25■□□□□ 0.51
TTC28Q96AY4 MIR6787-201ENST00000616675 61 ntBASIC18.25■□□□□ 0.51
TTC28Q96AY4 LINC00623-204ENST00000617702 746 ntTSL 5 BASIC18.25■□□□□ 0.51
TTC28Q96AY4 SERPINH1-215ENST00000533603 2299 ntAPPRIS P1 TSL 2 BASIC18.25■□□□□ 0.51
TTC28Q96AY4 CCDC78-201ENST00000293889 1611 ntAPPRIS P2 TSL 1 (best) BASIC18.25■□□□□ 0.51
TTC28Q96AY4 NDUFV1-201ENST00000322776 1596 ntAPPRIS P3 TSL 1 (best) BASIC18.24■□□□□ 0.51
TTC28Q96AY4 APBB3-204ENST00000358580 2020 ntTSL 5 BASIC18.24■□□□□ 0.51
TTC28Q96AY4 NDUFA10-203ENST00000404554 1557 ntTSL 5 BASIC18.24■□□□□ 0.51
TTC28Q96AY4 GMPPA-204ENST00000373908 1501 ntAPPRIS P1 TSL 5 BASIC18.24■□□□□ 0.51
TTC28Q96AY4 BEST2-201ENST00000042931 1908 ntAPPRIS P1 TSL 1 (best) BASIC18.24■□□□□ 0.51
TTC28Q96AY4 UBE2S-201ENST00000264552 2548 ntAPPRIS P1 TSL 1 (best) BASIC18.24■□□□□ 0.51
TTC28Q96AY4 BICD1-205ENST00000550207 1328 ntTSL 3 BASIC18.24■□□□□ 0.51
TTC28Q96AY4 ASTL-201ENST00000342380 1296 ntAPPRIS P1 TSL 1 (best) BASIC18.24■□□□□ 0.51
TTC28Q96AY4 SLC18B1-202ENST00000367918 472 ntTSL 5 BASIC18.24■□□□□ 0.51
TTC28Q96AY4 TNNC2-201ENST00000372555 710 ntAPPRIS P1 TSL 1 (best) BASIC18.24■□□□□ 0.51
TTC28Q96AY4 TNNC2-202ENST00000372557 780 ntTSL 3 BASIC18.24■□□□□ 0.51
TTC28Q96AY4 AC013270.1-201ENST00000425578 440 ntTSL 2 BASIC18.24■□□□□ 0.51
TTC28Q96AY4 PTPA-220ENST00000436883 532 ntTSL 4 BASIC18.24■□□□□ 0.51
TTC28Q96AY4 KRT17P7-201ENST00000451704 1104 ntBASIC18.24■□□□□ 0.51
TTC28Q96AY4 TMSB15B-204ENST00000540220 665 ntAPPRIS P1 TSL 1 (best) BASIC18.24■□□□□ 0.51
TTC28Q96AY4 TMSB15B-205ENST00000563257 590 ntTSL 4 BASIC18.24■□□□□ 0.51
TTC28Q96AY4 TBC1D16-205ENST00000572862 1141 ntTSL 1 (best) BASIC18.24■□□□□ 0.51
TTC28Q96AY4 SLC25A39-207ENST00000586016 1156 ntTSL 5 BASIC18.24■□□□□ 0.51
TTC28Q96AY4 AC019129.2-201ENST00000609837 1235 ntBASIC18.24■□□□□ 0.51
TTC28Q96AY4 ME2-216ENST00000639850 2331 ntTSL 5 BASIC18.24■□□□□ 0.51
TTC28Q96AY4 MMP28-201ENST00000605424 1928 ntAPPRIS P3 TSL 1 (best) BASIC18.24■□□□□ 0.51
TTC28Q96AY4 FAM129C-212ENST00000601861 2180 ntAPPRIS ALT2 TSL 2 BASIC18.24■□□□□ 0.51
TTC28Q96AY4 ACOT7-202ENST00000377842 1813 ntAPPRIS ALT2 TSL 1 (best) BASIC18.24■□□□□ 0.51
TTC28Q96AY4 NCF1C-201ENST00000438382 1427 ntBASIC18.24■□□□□ 0.51
TTC28Q96AY4 GDF5OS-201ENST00000374375 1734 ntAPPRIS P1 TSL 2 BASIC18.24■□□□□ 0.51
TTC28Q96AY4 LPCAT4-201ENST00000314891 2262 ntAPPRIS P1 TSL 1 (best) BASIC18.24■□□□□ 0.51
TTC28Q96AY4 DAZAP1-211ENST00000592522 2157 ntAPPRIS ALT1 TSL 5 BASIC18.24■□□□□ 0.51
TTC28Q96AY4 SPDYE21P-201ENST00000413323 827 ntBASIC18.24■□□□□ 0.51
TTC28Q96AY4 LINC00404-201ENST00000418660 428 ntTSL 2 BASIC18.24■□□□□ 0.51
TTC28Q96AY4 TMEM220-AS1-206ENST00000583343 876 ntTSL 3 BASIC18.24■□□□□ 0.51
TTC28Q96AY4 OCEL1-213ENST00000601529 942 ntTSL 3 BASIC18.24■□□□□ 0.51
TTC28Q96AY4 HNRNPDL-206ENST00000602300 1291 ntAPPRIS ALT2 TSL 1 (best) BASIC18.24■□□□□ 0.51
TTC28Q96AY4 AC239798.4-201ENST00000609879 700 ntTSL 2 BASIC18.24■□□□□ 0.51
TTC28Q96AY4 MED16-214ENST00000617672 554 ntTSL 5 BASIC18.24■□□□□ 0.51
TTC28Q96AY4 PPT2-244ENST00000324816 2053 ntAPPRIS ALT2 TSL 1 (best) BASIC18.24■□□□□ 0.51
TTC28Q96AY4 PKD1L2-209ENST00000531391 1488 ntTSL 1 (best) BASIC18.24■□□□□ 0.51
TTC28Q96AY4 DHRS3-204ENST00000616661 1722 ntAPPRIS P1 TSL 1 (best) BASIC18.23■□□□□ 0.51
TTC28Q96AY4 HIKESHI-207ENST00000533986 1694 ntTSL 1 (best) BASIC18.23■□□□□ 0.51
TTC28Q96AY4 REXO1-201ENST00000170168 4591 ntAPPRIS P1 TSL 1 (best) BASIC18.23■□□□□ 0.51
TTC28Q96AY4 TBC1D1-203ENST00000402522 1567 ntTSL 2 BASIC18.23■□□□□ 0.51
TTC28Q96AY4 AC008677.1-201ENST00000519230 1561 ntBASIC18.23■□□□□ 0.51
TTC28Q96AY4 DUOXA1-202ENST00000430224 1317 ntTSL 1 (best) BASIC18.23■□□□□ 0.51
TTC28Q96AY4 Z98044.1-201ENST00000632503 1764 ntBASIC18.23■□□□□ 0.51
TTC28Q96AY4 LRRC37A5P-201ENST00000374304 1103 ntTSL 1 (best) BASIC18.23■□□□□ 0.51
TTC28Q96AY4 MRPS18AP1-201ENST00000414458 589 ntBASIC18.23■□□□□ 0.51
TTC28Q96AY4 NKTR-203ENST00000442970 646 ntTSL 2 BASIC18.23■□□□□ 0.51
TTC28Q96AY4 SCN4B-204ENST00000529878 566 ntTSL 4 BASIC18.23■□□□□ 0.51
TTC28Q96AY4 AC116612.1-201ENST00000557144 562 ntTSL 3 BASIC18.23■□□□□ 0.51
TTC28Q96AY4 MRPS23-202ENST00000578444 580 ntTSL 2 BASIC18.23■□□□□ 0.51
TTC28Q96AY4 AC092919.2-201ENST00000623631 1645 ntBASIC18.23■□□□□ 0.51
TTC28Q96AY4 UBAP1-204ENST00000625521 2029 ntTSL 2 BASIC18.23■□□□□ 0.51
TTC28Q96AY4 YAP1-211ENST00000629586 1365 ntTSL 5 BASIC18.23■□□□□ 0.51
TTC28Q96AY4 DDX19B-207ENST00000563206 1765 ntTSL 5 BASIC18.23■□□□□ 0.51
TTC28Q96AY4 ZNF446-208ENST00000622313 1884 ntTSL 1 (best) BASIC18.23■□□□□ 0.51
TTC28Q96AY4 CENPM-201ENST00000215980 966 ntAPPRIS P1 TSL 1 (best) BASIC18.23■□□□□ 0.51
TTC28Q96AY4 HDAC11-202ENST00000402259 1000 ntTSL 3 BASIC18.23■□□□□ 0.51
TTC28Q96AY4 SNHG11-207ENST00000434729 1058 ntTSL 4 BASIC18.23■□□□□ 0.51
TTC28Q96AY4 MRNIP-212ENST00000520698 902 ntAPPRIS ALT2 TSL 2 BASIC18.23■□□□□ 0.51
TTC28Q96AY4 AC008115.1-201ENST00000542291 150 ntTSL 1 (best) BASIC18.23■□□□□ 0.51
TTC28Q96AY4 CERNA1-201ENST00000559779 908 ntTSL 3 BASIC18.23■□□□□ 0.51
TTC28Q96AY4 TRAPPC6A-202ENST00000585934 758 ntAPPRIS P1 TSL 1 (best) BASIC18.23■□□□□ 0.51
TTC28Q96AY4 ARMC10-202ENST00000323716 2635 ntTSL 1 (best) BASIC18.23■□□□□ 0.51
TTC28Q96AY4 CSPG5-202ENST00000383738 4161 ntAPPRIS ALT2 TSL 1 (best) BASIC18.23■□□□□ 0.51
TTC28Q96AY4 NDUFAF3-202ENST00000326925 2012 ntAPPRIS P1 TSL 1 (best) BASIC18.23■□□□□ 0.51
TTC28Q96AY4 RBM14-RBM4-201ENST00000412278 1566 ntAPPRIS P1 TSL 2 BASIC18.22■□□□□ 0.51
TTC28Q96AY4 CERCAM-213ENST00000612334 1554 ntAPPRIS ALT2 TSL 5 BASIC18.22■□□□□ 0.51
TTC28Q96AY4 TMEM198-202ENST00000373883 2218 ntAPPRIS P1 TSL 1 (best) BASIC18.22■□□□□ 0.51
TTC28Q96AY4 VGF-201ENST00000249330 2575 ntAPPRIS P1 TSL 1 (best) BASIC18.22■□□□□ 0.51
TTC28Q96AY4 CHAC1-202ENST00000446533 1849 ntTSL 1 (best) BASIC18.22■□□□□ 0.51
TTC28Q96AY4 ANKRD65-201ENST00000427211 1976 ntTSL 1 (best) BASIC18.22■□□□□ 0.51
TTC28Q96AY4 PRDX5-202ENST00000347941 463 ntTSL 1 (best) BASIC18.22■□□□□ 0.51
TTC28Q96AY4 AC139149.1-202ENST00000442532 783 ntTSL 3 BASIC18.22■□□□□ 0.51
TTC28Q96AY4 TMEM14B-212ENST00000475942 992 ntTSL 2 BASIC18.22■□□□□ 0.51
TTC28Q96AY4 AC008969.1-205ENST00000553254 876 ntTSL 2 BASIC18.22■□□□□ 0.51
Retrieved 100 of 98,524 protein–RNA pairs in 23.8 ms